RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 ABL2P42684 1182 aa8.85□□□□□ -0.99
PRKDC-210ENST00000541488 MAP2K3P46734 347 aa8.85□□□□□ -0.99
PRKDC-210ENST00000541488 RNF144AP50876 292 aaPredicted RBP8.85□□□□□ -0.99
PRKDC-210ENST00000541488 FOXD4L6Q3SYB3 417 aaPredicted RBP8.85□□□□□ -0.99
PRKDC-210ENST00000541488 FOXD4L3Q6VB84 417 aaPredicted RBP8.85□□□□□ -0.99
PRKDC-210ENST00000541488 ESPNB1AK53 854 aa8.84□□□□□ -0.99
PRKDC-210ENST00000541488 LINC00114Q6XXX2 140 aa8.84□□□□□ -0.99
PRKDC-210ENST00000541488 GAS2L1Q99501 681 aaPredicted RBP8.84□□□□□ -0.99
PRKDC-210ENST00000541488 DYRK1BQ9Y463 629 aa8.84□□□□□ -0.99
PRKDC-210ENST00000541488 HOXB4P17483 251 aaPredicted RBP8.83□□□□□ -1
PRKDC-210ENST00000541488 VAC14Q08AM6 782 aa8.82□□□□□ -1
PRKDC-210ENST00000541488 MCM6Q14566 821 aa8.82□□□□□ -1
PRKDC-210ENST00000541488 EDARADDQ8WWZ3 215 aa8.82□□□□□ -1
PRKDC-210ENST00000541488 PRM3Q9NNZ6 103 aa8.82□□□□□ -1
PRKDC-210ENST00000541488 ZNF330Q9Y3S2 320 aaPredicted RBP8.82□□□□□ -1
PRKDC-210ENST00000541488 SOCS7O14512 581 aa8.81□□□□□ -1
PRKDC-210ENST00000541488 IRF5Q13568 498 aa8.81□□□□□ -1
PRKDC-210ENST00000541488 KLRG1Q96E93 195 aa8.8□□□□□ -1
PRKDC-210ENST00000541488 PCDHB11Q9Y5F2 797 aa8.8□□□□□ -1
PRKDC-210ENST00000541488 SEPT12Q8IYM1 358 aa8.79□□□□□ -1
PRKDC-210ENST00000541488 NUCKS1Q9H1E3 243 aaKnown RBP8.79□□□□□ -1
PRKDC-210ENST00000541488 GNB5O14775 395 aa8.78□□□□□ -1
PRKDC-210ENST00000541488 SCTRP47872 440 aa8.78□□□□□ -1
PRKDC-210ENST00000541488 GDF2Q9UK05 429 aaPredicted RBP8.78□□□□□ -1
PRKDC-210ENST00000541488 AMPD1P23109 780 aa8.77□□□□□ -1.01
PRKDC-210ENST00000541488 POU4F2Q12837 409 aa8.77□□□□□ -1.01
PRKDC-210ENST00000541488 POM121Q96HA1 1249 aa8.77□□□□□ -1.01
PRKDC-210ENST00000541488 ZFP64Q9NPA5 681 aa8.77□□□□□ -1.01
PRKDC-210ENST00000541488 ARTNQ5T4W7 220 aa8.76□□□□□ -1.01
PRKDC-210ENST00000541488 RNF20Q5VTR2 975 aa8.76□□□□□ -1.01
PRKDC-210ENST00000541488 GOLGA2P5Q9HBQ8 144 aa8.76□□□□□ -1.01
PRKDC-210ENST00000541488 CEP126Q9P2H0 1117 aa8.76□□□□□ -1.01
PRKDC-210ENST00000541488 PIK3R2O00459 728 aa8.75□□□□□ -1.01
PRKDC-210ENST00000541488 GPC1P35052 558 aa8.75□□□□□ -1.01
PRKDC-210ENST00000541488 EIF4G2P78344 907 aaKnown RBP eCLIP8.75□□□□□ -1.01
PRKDC-210ENST00000541488 TSGA10IPQ3SY00 556 aa8.75□□□□□ -1.01
PRKDC-210ENST00000541488 CC2D2BQ6DHV5 1058 aa8.75□□□□□ -1.01
PRKDC-210ENST00000541488 CDCA7Q9BWT1 371 aaPredicted RBP8.75□□□□□ -1.01
PRKDC-210ENST00000541488 CFHR5Q9BXR6 569 aa8.75□□□□□ -1.01
PRKDC-210ENST00000541488 COG6Q9Y2V7 657 aa8.75□□□□□ -1.01
PRKDC-210ENST00000541488 ATP5J2-PTCD1G3V325 749 aa8.74□□□□□ -1.01
PRKDC-210ENST00000541488 MEN1O00255 615 aa8.74□□□□□ -1.01
PRKDC-210ENST00000541488 THBS1P07996 1170 aa8.74□□□□□ -1.01
PRKDC-210ENST00000541488 MCCD1P59942 119 aaPredicted RBP8.74□□□□□ -1.01
PRKDC-210ENST00000541488 RSPO4Q2I0M5 234 aaPredicted RBP8.74□□□□□ -1.01
PRKDC-210ENST00000541488 GOLGA6L1Q8N7Z2 621 aa8.74□□□□□ -1.01
PRKDC-210ENST00000541488 CCDC85AQ96PX6 553 aaPredicted RBP8.74□□□□□ -1.01
PRKDC-210ENST00000541488 ESF1Q9H501 851 aaKnown RBP8.74□□□□□ -1.01
PRKDC-210ENST00000541488 NBPF10Q6P3W6 841 aaKnown RBP8.73□□□□□ -1.01
PRKDC-210ENST00000541488 NBPF15Q8N660 670 aa8.73□□□□□ -1.01
PRKDC-210ENST00000541488 RAB6BQ9NRW1 208 aa8.73□□□□□ -1.01
PRKDC-210ENST00000541488 NOP53Q9NZM5 478 aaKnown RBP8.73□□□□□ -1.01
PRKDC-210ENST00000541488 GATA4P43694 442 aa8.72□□□□□ -1.01
PRKDC-210ENST00000541488 ERVK-9P63128 1117 aa8.72□□□□□ -1.01
PRKDC-210ENST00000541488 NBPF11Q86T75 865 aa8.72□□□□□ -1.01
PRKDC-210ENST00000541488 ZNF592Q92610 1267 aa8.72□□□□□ -1.01
PRKDC-210ENST00000541488 F11P03951 625 aa8.71□□□□□ -1.02
PRKDC-210ENST00000541488 SLFNL1Q499Z3 407 aa8.71□□□□□ -1.02
PRKDC-210ENST00000541488 SLCO4C1Q6ZQN7 724 aa8.71□□□□□ -1.02
PRKDC-210ENST00000541488 A0A1W2PRU2 124 aa8.7□□□□□ -1.02
PRKDC-210ENST00000541488 DGKGP49619 791 aa8.7□□□□□ -1.02
PRKDC-210ENST00000541488 TMEM132AQ24JP5 1023 aa8.7□□□□□ -1.02
PRKDC-210ENST00000541488 OXLD1Q5BKU9 147 aa8.7□□□□□ -1.02
PRKDC-210ENST00000541488 SLC27A3Q5K4L6 730 aa8.7□□□□□ -1.02
PRKDC-210ENST00000541488 RNF135Q8IUD6 432 aa8.7□□□□□ -1.02
PRKDC-210ENST00000541488 OSBPL3Q9H4L5 887 aa8.7□□□□□ -1.02
PRKDC-210ENST00000541488 ARHGEF10LQ9HCE6 1279 aa8.7□□□□□ -1.02
PRKDC-210ENST00000541488 TIMMDC1Q9NPL8 285 aa8.7□□□□□ -1.02
PRKDC-210ENST00000541488 UBTFP17480 764 aaKnown RBP8.69□□□□□ -1.02
PRKDC-210ENST00000541488 SEMA3FQ13275 785 aa8.69□□□□□ -1.02
PRKDC-210ENST00000541488 WASHC4Q2M389 1173 aa8.69□□□□□ -1.02
PRKDC-210ENST00000541488 NKAPLQ5M9Q1 402 aa8.69□□□□□ -1.02
PRKDC-210ENST00000541488 BTBD6Q96KE9 485 aa8.69□□□□□ -1.02
PRKDC-210ENST00000541488 GGA1Q9UJY5 639 aa8.69□□□□□ -1.02
PRKDC-210ENST00000541488 DOLKQ9UPQ8 538 aa8.69□□□□□ -1.02
PRKDC-210ENST00000541488 PHF24Q9UPV7 400 aa8.69□□□□□ -1.02
PRKDC-210ENST00000541488 RAD21O60216 631 aa8.68□□□□□ -1.02
PRKDC-210ENST00000541488 STAU1O95793 577 aaKnown RBP8.68□□□□□ -1.02
PRKDC-210ENST00000541488 CYP2U1Q7Z449 544 aa8.68□□□□□ -1.02
PRKDC-210ENST00000541488 C2CD2LO14523 706 aa8.67□□□□□ -1.02
PRKDC-210ENST00000541488 MYCP01106 439 aaPredicted RBP8.67□□□□□ -1.02
PRKDC-210ENST00000541488 TRIM52Q96A61 297 aa8.67□□□□□ -1.02
PRKDC-210ENST00000541488 NLRP3Q96P20 1036 aa8.67□□□□□ -1.02
PRKDC-210ENST00000541488 GRIP2Q9C0E4 1043 aa8.67□□□□□ -1.02
PRKDC-210ENST00000541488 SPATA31C2B4DYI2 1134 aa8.66□□□□□ -1.02
PRKDC-210ENST00000541488 PIK3CDO00329 1044 aa8.66□□□□□ -1.02
PRKDC-210ENST00000541488 BMP4P12644 408 aa8.66□□□□□ -1.02
PRKDC-210ENST00000541488 PHTF2Q8N3S3 785 aa8.66□□□□□ -1.02
PRKDC-210ENST00000541488 KRTAP4-7Q9BYR0 210 aa8.66□□□□□ -1.02
PRKDC-210ENST00000541488 GPAMQ9HCL2 828 aa8.66□□□□□ -1.02
PRKDC-210ENST00000541488 POM121CA8CG34 1229 aa8.65□□□□□ -1.02
PRKDC-210ENST00000541488 DYRK3O43781 588 aa8.65□□□□□ -1.02
PRKDC-210ENST00000541488 TRAK2O60296 914 aa8.65□□□□□ -1.02
PRKDC-210ENST00000541488 EPXP11678 715 aa8.65□□□□□ -1.02
PRKDC-210ENST00000541488 FLIIQ13045 1269 aa8.65□□□□□ -1.02
PRKDC-210ENST00000541488 WDR44Q5JSH3 913 aa8.65□□□□□ -1.02
PRKDC-210ENST00000541488 CCDC125Q86Z20 511 aa8.65□□□□□ -1.02
PRKDC-210ENST00000541488 WASLO00401 505 aaPredicted RBP8.64□□□□□ -1.03
PRKDC-210ENST00000541488 UBAP2LQ14157 1087 aaKnown RBP8.64□□□□□ -1.03
PRKDC-210ENST00000541488 TAS1R3Q7RTX0 852 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms