RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 ATP6V1AP38606 617 aa16.57■□□□□ 0.24
COPA-205ENST00000541366 NKX1-1Q15270 411 aaPredicted RBP16.57■□□□□ 0.24
COPA-205ENST00000541366 ARHGAP27Q6ZUM4 889 aa16.56■□□□□ 0.24
COPA-205ENST00000541366 KIF13BQ9NQT8 1826 aa16.55■□□□□ 0.24
COPA-205ENST00000541366 TMOD3Q9NYL9 352 aa16.55■□□□□ 0.24
COPA-205ENST00000541366 TONSLQ96HA7 1378 aa16.54■□□□□ 0.24
COPA-205ENST00000541366 DPEP1P16444 411 aa16.54■□□□□ 0.24
COPA-205ENST00000541366 COL13A1Q5TAT6 717 aaPredicted RBP16.54■□□□□ 0.24
COPA-205ENST00000541366 KIF20BQ96Q89 1820 aa16.54■□□□□ 0.24
COPA-205ENST00000541366 PPM1GO15355 546 aaPredicted RBP16.53■□□□□ 0.24
COPA-205ENST00000541366 TGFB2P61812 414 aa16.53■□□□□ 0.24
COPA-205ENST00000541366 ATG3Q9NT62 314 aa16.53■□□□□ 0.24
COPA-205ENST00000541366 WDR90Q96KV7 1748 aa16.53■□□□□ 0.24
COPA-205ENST00000541366 CAPN15O75808 1086 aa16.52■□□□□ 0.24
COPA-205ENST00000541366 FCHSD2O94868 740 aa16.52■□□□□ 0.24
COPA-205ENST00000541366 KCNA4P22459 653 aa16.52■□□□□ 0.24
COPA-205ENST00000541366 SLC4A9Q96Q91 983 aa16.52■□□□□ 0.24
COPA-205ENST00000541366 SPG7Q9UQ90 795 aa16.52■□□□□ 0.24
COPA-205ENST00000541366 NCAPD2Q15021 1401 aa16.52■□□□□ 0.23
COPA-205ENST00000541366 C10orf71Q711Q0 1435 aa16.52■□□□□ 0.23
COPA-205ENST00000541366 TMF1P82094 1093 aa16.51■□□□□ 0.23
COPA-205ENST00000541366 TRAPPC3LQ5T215 181 aa16.51■□□□□ 0.23
COPA-205ENST00000541366 C9orf131Q5VYM1 1079 aa16.51■□□□□ 0.23
COPA-205ENST00000541366 EYA1Q99502 592 aa16.51■□□□□ 0.23
COPA-205ENST00000541366 CARD14Q9BXL6 1004 aa16.51■□□□□ 0.23
COPA-205ENST00000541366 KIF24Q5T7B8 1368 aa16.51■□□□□ 0.23
COPA-205ENST00000541366 PHKG2P15735 406 aa16.5■□□□□ 0.23
COPA-205ENST00000541366 ARHGEF1Q92888 912 aaKnown RBP16.5■□□□□ 0.23
COPA-205ENST00000541366 GYS1P13807 737 aa16.49■□□□□ 0.23
COPA-205ENST00000541366 KCNA3P22001 575 aa16.49■□□□□ 0.23
COPA-205ENST00000541366 BRCA1P38398 1863 aaKnown RBP16.49■□□□□ 0.23
COPA-205ENST00000541366 NLGN1Q8N2Q7 840 aa16.49■□□□□ 0.23
COPA-205ENST00000541366 RBM46Q8TBY0 533 aaKnown RBP16.49■□□□□ 0.23
COPA-205ENST00000541366 KLRG1Q96E93 195 aa16.49■□□□□ 0.23
COPA-205ENST00000541366 RTCBQ9Y3I0 505 aaKnown RBP16.49■□□□□ 0.23
COPA-205ENST00000541366 IFNL2Q8IZJ0 200 aa16.48■□□□□ 0.23
COPA-205ENST00000541366 RBM42Q9BTD8 480 aaKnown RBP16.48■□□□□ 0.23
COPA-205ENST00000541366 CCDC87Q9NVE4 849 aa16.48■□□□□ 0.23
COPA-205ENST00000541366 KCPQ6ZWJ8 1503 aa16.48■□□□□ 0.23
COPA-205ENST00000541366 KDRP35968 1356 aa16.48■□□□□ 0.23
COPA-205ENST00000541366 C4AP0C0L4 1744 aa16.48■□□□□ 0.23
COPA-205ENST00000541366 MYH14Q7Z406 1995 aaKnown RBP16.46■□□□□ 0.23
COPA-205ENST00000541366 C16orf71Q8IYS4 520 aaPredicted RBP16.46■□□□□ 0.23
COPA-205ENST00000541366 JMYQ8N9B5 988 aa16.46■□□□□ 0.23
COPA-205ENST00000541366 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.46■□□□□ 0.233e-14■□□□□ 10.2
COPA-205ENST00000541366 PARP3Q9Y6F1 533 aa16.46■□□□□ 0.23
COPA-205ENST00000541366 WASHC2AQ641Q2 1341 aa16.45■□□□□ 0.22
COPA-205ENST00000541366 SLC24A1O60721 1099 aa16.45■□□□□ 0.22
COPA-205ENST00000541366 RRAGCQ9HB90 399 aa16.45■□□□□ 0.22
COPA-205ENST00000541366 RFC4P35249 363 aa16.44■□□□□ 0.22
COPA-205ENST00000541366 RNF216Q9NWF9 866 aaPredicted RBP16.44■□□□□ 0.22
COPA-205ENST00000541366 RNF181Q9P0P0 153 aa16.44■□□□□ 0.22
COPA-205ENST00000541366 SRP68Q9UHB9 627 aaKnown RBP16.44■□□□□ 0.22
COPA-205ENST00000541366 ARFGEF1Q9Y6D6 1849 aa16.44■□□□□ 0.22
COPA-205ENST00000541366 COL5A3P25940 1745 aaPredicted RBP16.43■□□□□ 0.22
COPA-205ENST00000541366 ANKRD26Q9UPS8 1709 aa16.43■□□□□ 0.22
COPA-205ENST00000541366 RPS6KA4O75676 772 aa16.43■□□□□ 0.22
COPA-205ENST00000541366 HOXD11P31277 338 aaPredicted RBP16.43■□□□□ 0.22
COPA-205ENST00000541366 FSTL1Q12841 308 aa16.43■□□□□ 0.22
COPA-205ENST00000541366 RC3H1Q5TC82 1133 aaKnown RBP16.43■□□□□ 0.22
COPA-205ENST00000541366 PIM2Q9P1W9 311 aa16.43■□□□□ 0.22
COPA-205ENST00000541366 CHRNA5P30532 468 aa16.42■□□□□ 0.22
COPA-205ENST00000541366 TNS4Q8IZW8 715 aa16.42■□□□□ 0.22
COPA-205ENST00000541366 DCAF5Q96JK2 942 aa16.42■□□□□ 0.22
COPA-205ENST00000541366 POLKQ9UBT6 870 aa16.42■□□□□ 0.22
COPA-205ENST00000541366 CNTNAP4Q9C0A0 1308 aa16.42■□□□□ 0.22
COPA-205ENST00000541366 PLEKHG2Q9H7P9 1386 aa16.41■□□□□ 0.22
COPA-205ENST00000541366 DDR1Q08345 913 aa16.41■□□□□ 0.22
COPA-205ENST00000541366 EIF4A2Q14240 407 aaKnown RBP16.41■□□□□ 0.22
COPA-205ENST00000541366 FKBP8Q14318 412 aa16.41■□□□□ 0.22
COPA-205ENST00000541366 DALRD3Q5D0E6 543 aaKnown RBP16.41■□□□□ 0.22
COPA-205ENST00000541366 SBF1O95248 1867 aa16.4■□□□□ 0.22
COPA-205ENST00000541366 PTCD1O75127 700 aaKnown RBP16.4■□□□□ 0.22
COPA-205ENST00000541366 NPM3O75607 178 aaKnown RBP16.4■□□□□ 0.22
COPA-205ENST00000541366 TNNT2P45379 298 aaPredicted RBP16.4■□□□□ 0.22
COPA-205ENST00000541366 KDM2BQ8NHM5 1336 aa16.4■□□□□ 0.22
COPA-205ENST00000541366 ERVV-2B6SEH9 535 aa16.39■□□□□ 0.21
COPA-205ENST00000541366 ZNF831Q5JPB2 1677 aa16.39■□□□□ 0.21
COPA-205ENST00000541366 KDM6AO15550 1401 aaPredicted RBP16.38■□□□□ 0.21
COPA-205ENST00000541366 CRKLP46109 303 aaKnown RBP16.38■□□□□ 0.21
COPA-205ENST00000541366 RASSF7Q02833 373 aa16.38■□□□□ 0.21
COPA-205ENST00000541366 CABP4P57796 275 aa16.37■□□□□ 0.21
COPA-205ENST00000541366 PRELPP51888 382 aa16.36■□□□□ 0.21
COPA-205ENST00000541366 CDCA8Q53HL2 280 aa16.36■□□□□ 0.21
COPA-205ENST00000541366 ZNF530Q6P9A1 599 aaPredicted RBP16.36■□□□□ 0.21
COPA-205ENST00000541366 USP42Q9H9J4 1324 aaKnown RBP16.36■□□□□ 0.21
COPA-205ENST00000541366 TNRC6CQ9HCJ0 1690 aaKnown RBP16.36■□□□□ 0.21
COPA-205ENST00000541366 POLRMTO00411 1230 aaKnown RBP16.35■□□□□ 0.21
COPA-205ENST00000541366 SMC1BQ8NDV3 1235 aa16.35■□□□□ 0.21
COPA-205ENST00000541366 HSPA1AP0DMV8 641 aaKnown RBP16.34■□□□□ 0.21
COPA-205ENST00000541366 HSPA1BP0DMV9 641 aaKnown RBP16.34■□□□□ 0.21
COPA-205ENST00000541366 NFATC2IPQ8NCF5 419 aa16.34■□□□□ 0.21
COPA-205ENST00000541366 HSP90AB1P08238 724 aaKnown RBP16.33■□□□□ 0.2
COPA-205ENST00000541366 TM4SF1P30408 202 aa16.33■□□□□ 0.2
COPA-205ENST00000541366 PLEKHO1Q53GL0 409 aaPredicted RBP16.33■□□□□ 0.2
COPA-205ENST00000541366 INTS5Q6P9B9 1019 aaKnown RBP16.33■□□□□ 0.2
COPA-205ENST00000541366 TJP1Q07157 1748 aa16.33■□□□□ 0.2
COPA-205ENST00000541366 AEBP1Q8IUX7 1158 aa16.32■□□□□ 0.2
COPA-205ENST00000541366 ADAMTS7Q9UKP4 1686 aa16.32■□□□□ 0.2
COPA-205ENST00000541366 MTHFSP49914 203 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms