RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 PTPN5P54829 565 aa8.89□□□□□ -0.99
CLTCL1-206ENST00000540896 NUTM2GQ5VZR2 741 aa8.89□□□□□ -0.99
CLTCL1-206ENST00000540896 TNS3Q68CZ2 1445 aa8.88□□□□□ -0.99
CLTCL1-206ENST00000540896 TRPM3Q9HCF6 1732 aaPredicted RBP8.88□□□□□ -0.99
CLTCL1-206ENST00000540896 ONECUT3O60422 494 aaPredicted RBP8.88□□□□□ -0.99
CLTCL1-206ENST00000540896 MTHFSP49914 203 aa8.88□□□□□ -0.99
CLTCL1-206ENST00000540896 THSD4Q6ZMP0 1018 aa8.88□□□□□ -0.99
CLTCL1-206ENST00000540896 SSH2Q76I76 1423 aa8.88□□□□□ -0.99
CLTCL1-206ENST00000540896 ARHGEF10O15013 1369 aa8.87□□□□□ -0.99
CLTCL1-206ENST00000540896 PNPLA6Q8IY17 1366 aa8.87□□□□□ -0.99
CLTCL1-206ENST00000540896 NUTM2BA6NNL0 878 aaPredicted RBP8.87□□□□□ -0.99
CLTCL1-206ENST00000540896 NUTM2EB1AL46 878 aaPredicted RBP8.87□□□□□ -0.99
CLTCL1-206ENST00000540896 WDR43Q15061 677 aaKnown RBP eCLIP8.87□□□□□ -0.99
CLTCL1-206ENST00000540896 NUTM2AQ8IVF1 878 aaPredicted RBP8.87□□□□□ -0.99
CLTCL1-206ENST00000540896 CABLES1Q8TDN4 633 aa8.87□□□□□ -0.99
CLTCL1-206ENST00000540896 MON2Q7Z3U7 1717 aa8.87□□□□□ -0.99
CLTCL1-206ENST00000540896 SHPRHQ149N8 1683 aa8.86□□□□□ -0.99
CLTCL1-206ENST00000540896 ALS2Q96Q42 1657 aa8.86□□□□□ -0.99
CLTCL1-206ENST00000540896 DPYSL4O14531 572 aa8.86□□□□□ -0.99
CLTCL1-206ENST00000540896 FBLN1P23142 703 aa8.86□□□□□ -0.99
CLTCL1-206ENST00000540896 IFFO2Q5TF58 517 aa8.86□□□□□ -0.99
CLTCL1-206ENST00000540896 LAPTM4BQ86VI4 370 aa8.86□□□□□ -0.99
CLTCL1-206ENST00000540896 PNISRQ8TF01 805 aaKnown RBP8.86□□□□□ -0.99
CLTCL1-206ENST00000540896 SPATA31A6Q5VVP1 1343 aa8.85□□□□□ -0.99
CLTCL1-206ENST00000540896 ZBTB7CA1YPR0 619 aa8.85□□□□□ -0.99
CLTCL1-206ENST00000540896 SPDYE16A6NNV3 312 aaPredicted RBP8.85□□□□□ -0.99
CLTCL1-206ENST00000540896 HAP1P54257 671 aaPredicted RBP8.85□□□□□ -0.99
CLTCL1-206ENST00000540896 RRS1Q15050 365 aaKnown RBP8.85□□□□□ -0.99
CLTCL1-206ENST00000540896 ANKK1Q8NFD2 765 aa8.85□□□□□ -0.99
CLTCL1-206ENST00000540896 NRKQ7Z2Y5 1582 aa8.85□□□□□ -0.99
CLTCL1-206ENST00000540896 COL22A1Q8NFW1 1626 aaPredicted RBP8.84□□□□□ -0.99
CLTCL1-206ENST00000540896 ADAMTS2O95450 1211 aa8.84□□□□□ -0.99
CLTCL1-206ENST00000540896 C6orf132Q5T0Z8 1188 aa8.84□□□□□ -0.99
CLTCL1-206ENST00000540896 KCNH5Q8NCM2 988 aa8.84□□□□□ -0.99
CLTCL1-206ENST00000540896 POLKQ9UBT6 870 aa8.84□□□□□ -0.99
CLTCL1-206ENST00000540896 NUDCQ9Y266 331 aa8.84□□□□□ -0.99
CLTCL1-206ENST00000540896 PIK3C2AO00443 1686 aa8.84□□□□□ -0.99
CLTCL1-206ENST00000540896 USP31Q70CQ4 1352 aa8.84□□□□□ -0.99
CLTCL1-206ENST00000540896 U2SURPO15042 1029 aaKnown RBP8.83□□□□□ -1
CLTCL1-206ENST00000540896 DIAPH1O60610 1272 aaKnown RBP8.83□□□□□ -1
CLTCL1-206ENST00000540896 RGS20O76081 388 aa8.83□□□□□ -1
CLTCL1-206ENST00000540896 AMPHP49418 695 aa8.83□□□□□ -1
CLTCL1-206ENST00000540896 MEX3CQ5U5Q3 659 aaKnown RBP8.83□□□□□ -1
CLTCL1-206ENST00000540896 WDR70Q9NW82 654 aa8.83□□□□□ -1
CLTCL1-206ENST00000540896 EMILIN1Q9Y6C2 1016 aa8.83□□□□□ -1
CLTCL1-206ENST00000540896 AATKQ6ZMQ8 1374 aa8.83□□□□□ -1
CLTCL1-206ENST00000540896 MED1Q15648 1581 aaPredicted RBP8.82□□□□□ -1
CLTCL1-206ENST00000540896 OVOS2A0A0J9YW53 1432 aa8.82□□□□□ -1
CLTCL1-206ENST00000540896 OVOS2Q6IE36 1432 aa8.82□□□□□ -1
CLTCL1-206ENST00000540896 GCP02774 474 aa8.82□□□□□ -1
CLTCL1-206ENST00000540896 COL9A1P20849 921 aa8.82□□□□□ -1
CLTCL1-206ENST00000540896 HNRNPUQ00839 825 aaKnown RBP eCLIP8.82□□□□□ -1
CLTCL1-206ENST00000540896 KIF20BQ96Q89 1820 aa8.82□□□□□ -1
CLTCL1-206ENST00000540896 USP19O94966 1318 aa8.81□□□□□ -1
CLTCL1-206ENST00000540896 LRP6O75581 1613 aa8.81□□□□□ -1
CLTCL1-206ENST00000540896 U2AF1L5P0DN76 240 aaPredicted RBP8.81□□□□□ -1
CLTCL1-206ENST00000540896 ZC3H6P61129 1189 aaKnown RBP8.81□□□□□ -1
CLTCL1-206ENST00000540896 U2AF1Q01081 240 aaKnown RBP eCLIP8.81□□□□□ -1
CLTCL1-206ENST00000540896 NYAP1Q6ZVC0 841 aa8.81□□□□□ -1
CLTCL1-206ENST00000540896 NGLY1Q96IV0 654 aa8.81□□□□□ -1
CLTCL1-206ENST00000540896 C8orf37Q96NL8 207 aa8.81□□□□□ -1
CLTCL1-206ENST00000540896 ADAMTS8Q9UP79 889 aa8.81□□□□□ -1
CLTCL1-206ENST00000540896 MAP3K19Q56UN5 1328 aa8.8□□□□□ -1
CLTCL1-206ENST00000540896 FAM83GA6ND36 823 aa8.8□□□□□ -1
CLTCL1-206ENST00000540896 PROX2Q3B8N5 592 aa8.8□□□□□ -1
CLTCL1-206ENST00000540896 KIAA1468Q9P260 1216 aa8.8□□□□□ -1
CLTCL1-206ENST00000540896 ABCA3Q99758 1704 aa8.8□□□□□ -1
CLTCL1-206ENST00000540896 MARF1Q9Y4F3 1742 aaKnown RBP8.8□□□□□ -1
CLTCL1-206ENST00000540896 CRYBG1Q9Y4K1 1723 aa8.8□□□□□ -1
CLTCL1-206ENST00000540896 SLIT3O75094 1523 aa8.8□□□□□ -1
CLTCL1-206ENST00000540896 KIAA0232Q92628 1395 aa8.79□□□□□ -1
CLTCL1-206ENST00000540896 SENP3-EIF4A1A0A087X0R7 540 aa8.79□□□□□ -1
CLTCL1-206ENST00000540896 CENPBP07199 599 aaPredicted RBP8.79□□□□□ -1
CLTCL1-206ENST00000540896 PDIA6Q15084 440 aa8.79□□□□□ -1
CLTCL1-206ENST00000540896 E2F4Q16254 413 aa8.79□□□□□ -1
CLTCL1-206ENST00000540896 HSP90AB2PQ58FF8 381 aa8.79□□□□□ -1
CLTCL1-206ENST00000540896 ILDR2Q71H61 639 aa8.79□□□□□ -1
CLTCL1-206ENST00000540896 LTV1Q96GA3 475 aaPredicted RBP8.79□□□□□ -1
CLTCL1-206ENST00000540896 PNNQ9H307 717 aaKnown RBP8.79□□□□□ -1
CLTCL1-206ENST00000540896 PRDM11Q9NQV5 511 aa8.79□□□□□ -1
CLTCL1-206ENST00000540896 PHRF1Q9P1Y6 1649 aaKnown RBP8.79□□□□□ -1
CLTCL1-206ENST00000540896 USP54Q70EL1 1684 aa8.78□□□□□ -1
CLTCL1-206ENST00000540896 ANKRD26Q9UPS8 1709 aa8.78□□□□□ -1
CLTCL1-206ENST00000540896 NEFMP07197 916 aa8.78□□□□□ -1
CLTCL1-206ENST00000540896 CHRNA2Q15822 529 aa8.78□□□□□ -1
CLTCL1-206ENST00000540896 CCDC146Q8IYE0 955 aa8.78□□□□□ -1
CLTCL1-206ENST00000540896 DDX12PQ92771 950 aa8.78□□□□□ -1
CLTCL1-206ENST00000540896 CPDO75976 1380 aa8.77□□□□□ -1.01
CLTCL1-206ENST00000540896 FLT4P35916 1363 aa8.77□□□□□ -1.01
CLTCL1-206ENST00000540896 TRIM6-TRIM34B2RNG4 842 aa8.77□□□□□ -1.01
CLTCL1-206ENST00000540896 HOXC9P31274 260 aa8.77□□□□□ -1.01
CLTCL1-206ENST00000540896 IL13P35225 146 aa8.77□□□□□ -1.01
CLTCL1-206ENST00000540896 EIF4A2Q14240 407 aaKnown RBP8.77□□□□□ -1.01
CLTCL1-206ENST00000540896 PACS2Q86VP3 889 aa8.77□□□□□ -1.01
CLTCL1-206ENST00000540896 ARHGEF25Q86VW2 580 aa8.77□□□□□ -1.01
CLTCL1-206ENST00000540896 IP6K1Q92551 441 aa8.77□□□□□ -1.01
CLTCL1-206ENST00000540896 SALL2Q9Y467 1007 aaPredicted RBP8.77□□□□□ -1.01
CLTCL1-206ENST00000540896 ARIH1Q9Y4X5 557 aaPredicted RBP8.77□□□□□ -1.01
CLTCL1-206ENST00000540896 AFF2P51816 1311 aa8.77□□□□□ -1.01
CLTCL1-206ENST00000540896 INSRP06213 1382 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms