RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 LMBRD1Q9NUN5 540 aa11.56□□□□□ -0.56
CTNNA1-243ENST00000540387 AK9Q5TCS8 1911 aa11.56□□□□□ -0.56
CTNNA1-243ENST00000540387 ZBTB9Q96C00 473 aa11.56□□□□□ -0.56
CTNNA1-243ENST00000540387 MST1RQ04912 1400 aa11.56□□□□□ -0.56
CTNNA1-243ENST00000540387 TOPAZ1Q8N9V7 1692 aa11.56□□□□□ -0.56
CTNNA1-243ENST00000540387 CD2BP2O95400 341 aaKnown RBP11.55□□□□□ -0.56
CTNNA1-243ENST00000540387 MMP14P50281 582 aa11.55□□□□□ -0.56
CTNNA1-243ENST00000540387 WDR43Q15061 677 aaKnown RBP eCLIP11.55□□□□□ -0.56
CTNNA1-243ENST00000540387 DDX17Q92841 729 aaKnown RBP11.55□□□□□ -0.56
CTNNA1-243ENST00000540387 RBM27Q9P2N5 1060 aaKnown RBP11.55□□□□□ -0.56
CTNNA1-243ENST00000540387 DCCP43146 1447 aa11.55□□□□□ -0.56
CTNNA1-243ENST00000540387 LRSAM1Q6UWE0 723 aa11.55□□□□□ -0.56
CTNNA1-243ENST00000540387 SLAIN2Q9P270 581 aa11.55□□□□□ -0.56
CTNNA1-243ENST00000540387 NSD2O96028 1365 aa11.55□□□□□ -0.56
CTNNA1-243ENST00000540387 SSH2Q76I76 1423 aa11.54□□□□□ -0.56
CTNNA1-243ENST00000540387 FKBP5Q13451 457 aaPredicted RBP11.54□□□□□ -0.56
CTNNA1-243ENST00000540387 RWDD1Q9H446 243 aaPredicted RBP11.54□□□□□ -0.56
CTNNA1-243ENST00000540387 C17orf53Q8N3J3 647 aaPredicted RBP11.54□□□□□ -0.56
CTNNA1-243ENST00000540387 K7ELQ4 463 aaPredicted RBP11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 TERF2Q15554 542 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 NUTM2GQ5VZR2 741 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 RNF214Q8ND24 703 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 GAS2L2Q8NHY3 880 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 CHMP4CQ96CF2 233 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 COG3Q96JB2 828 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 CALCOCO1Q9P1Z2 691 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 XIRP1Q702N8 1843 aaKnown RBP11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 SOX12O15370 315 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 MTHFSP49914 203 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 NGEFQ8N5V2 710 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 SYCE3A1L190 88 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 RIOK3O14730 519 aaKnown RBP11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 MPNDQ8N594 471 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 ABTB2Q8N961 1025 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 SPTLC3Q9NUV7 552 aa11.53□□□□□ -0.56
CTNNA1-243ENST00000540387 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.52□□□□□ -0.57
CTNNA1-243ENST00000540387 BRINP3Q76B58 766 aa11.52□□□□□ -0.57
CTNNA1-243ENST00000540387 KRT28Q7Z3Y7 464 aa11.52□□□□□ -0.57
CTNNA1-243ENST00000540387 GPT2Q8TD30 523 aa11.52□□□□□ -0.57
CTNNA1-243ENST00000540387 KIF2CQ99661 725 aa11.52□□□□□ -0.57
CTNNA1-243ENST00000540387 TSPYL1Q9H0U9 437 aa11.52□□□□□ -0.57
CTNNA1-243ENST00000540387 CTNNA3Q9UI47 895 aa11.52□□□□□ -0.57
CTNNA1-243ENST00000540387 TTC21AQ8NDW8 1320 aa11.52□□□□□ -0.57
CTNNA1-243ENST00000540387 CTIFO43310 598 aaKnown RBP11.52□□□□□ -0.57
CTNNA1-243ENST00000540387 PSEN1P49768 467 aa11.52□□□□□ -0.57
CTNNA1-243ENST00000540387 NLRP6P59044 892 aa11.52□□□□□ -0.57
CTNNA1-243ENST00000540387 HDAC5Q9UQL6 1122 aa11.52□□□□□ -0.57
CTNNA1-243ENST00000540387 LTBP4Q8N2S1 1624 aa11.51□□□□□ -0.57
CTNNA1-243ENST00000540387 ITSN1Q15811 1721 aa11.51□□□□□ -0.57
CTNNA1-243ENST00000540387 YY1AP1Q9H869 796 aa11.51□□□□□ -0.57
CTNNA1-243ENST00000540387 AKAP12Q02952 1782 aa11.51□□□□□ -0.57
CTNNA1-243ENST00000540387 MON2Q7Z3U7 1717 aa11.51□□□□□ -0.57
CTNNA1-243ENST00000540387 DIAPH3Q9NSV4 1193 aa11.51□□□□□ -0.57
CTNNA1-243ENST00000540387 TMEM63CQ9P1W3 806 aa11.51□□□□□ -0.57
CTNNA1-243ENST00000540387 DDX41Q9UJV9 622 aaKnown RBP11.51□□□□□ -0.57
CTNNA1-243ENST00000540387 RLBP1P12271 317 aa11.5□□□□□ -0.57
CTNNA1-243ENST00000540387 ERICH4A6NGS2 130 aa11.5□□□□□ -0.57
CTNNA1-243ENST00000540387 PRPF40AO75400 957 aaKnown RBP11.5□□□□□ -0.57
CTNNA1-243ENST00000540387 LMOD2Q6P5Q4 547 aa11.5□□□□□ -0.57
CTNNA1-243ENST00000540387 CCDC146Q8IYE0 955 aa11.5□□□□□ -0.57
CTNNA1-243ENST00000540387 TTC12Q9H892 705 aaPredicted RBP11.5□□□□□ -0.57
CTNNA1-243ENST00000540387 GEMIN8Q9NWZ8 242 aaKnown RBP11.5□□□□□ -0.57
CTNNA1-243ENST00000540387 TRERF1Q96PN7 1200 aa11.49□□□□□ -0.57
CTNNA1-243ENST00000540387 POLKQ9UBT6 870 aa11.49□□□□□ -0.57
CTNNA1-243ENST00000540387 FEZ2Q9UHY8 353 aaPredicted RBP11.49□□□□□ -0.57
CTNNA1-243ENST00000540387 TNNQ9UQP3 1299 aa11.49□□□□□ -0.57
CTNNA1-243ENST00000540387 MORC2Q9Y6X9 1032 aaPredicted RBP11.49□□□□□ -0.57
CTNNA1-243ENST00000540387 RRS1Q15050 365 aaKnown RBP11.49□□□□□ -0.57
CTNNA1-243ENST00000540387 NCBP1Q09161 790 aaKnown RBP11.48□□□□□ -0.57
CTNNA1-243ENST00000540387 CHAF1AQ13111 956 aaPredicted RBP11.48□□□□□ -0.57
CTNNA1-243ENST00000540387 KCNG1Q9UIX4 513 aa11.48□□□□□ -0.57
CTNNA1-243ENST00000540387 EMILIN1Q9Y6C2 1016 aa11.48□□□□□ -0.57
CTNNA1-243ENST00000540387 NPHP3Q7Z494 1330 aa11.48□□□□□ -0.57
CTNNA1-243ENST00000540387 APAF1O14727 1248 aa11.48□□□□□ -0.57
CTNNA1-243ENST00000540387 RBM42Q9BTD8 480 aaKnown RBP11.48□□□□□ -0.57
CTNNA1-243ENST00000540387 USP31Q70CQ4 1352 aa11.47□□□□□ -0.57
CTNNA1-243ENST00000540387 CLGNO14967 610 aa11.47□□□□□ -0.57
CTNNA1-243ENST00000540387 MYCNP04198 464 aaPredicted RBP11.47□□□□□ -0.57
CTNNA1-243ENST00000540387 CYP2E1P05181 493 aaPredicted RBP11.47□□□□□ -0.57
CTNNA1-243ENST00000540387 NUCB2P80303 420 aa11.47□□□□□ -0.57
CTNNA1-243ENST00000540387 EFCC1Q9HA90 598 aa11.47□□□□□ -0.57
CTNNA1-243ENST00000540387 OVOS2A0A0J9YW53 1432 aa11.47□□□□□ -0.57
CTNNA1-243ENST00000540387 OVOS2Q6IE36 1432 aa11.47□□□□□ -0.57
CTNNA1-243ENST00000540387 NRKQ7Z2Y5 1582 aa11.47□□□□□ -0.57
CTNNA1-243ENST00000540387 KIF16BQ96L93 1317 aa11.47□□□□□ -0.57
CTNNA1-243ENST00000540387 NSFL1CQ9UNZ2 370 aaKnown RBP11.46□□□□□ -0.57
CTNNA1-243ENST00000540387 APPP05067 770 aa11.45□□□□□ -0.58
CTNNA1-243ENST00000540387 PKP1Q13835 747 aa11.45□□□□□ -0.58
CTNNA1-243ENST00000540387 TSPY26PQ9H489 355 aa11.45□□□□□ -0.58
CTNNA1-243ENST00000540387 BCCIPQ9P287 314 aaKnown RBP eCLIP11.45□□□□□ -0.58
CTNNA1-243ENST00000540387 KIF20BQ96Q89 1820 aa11.45□□□□□ -0.58
CTNNA1-243ENST00000540387 AATKQ6ZMQ8 1374 aa11.45□□□□□ -0.58
CTNNA1-243ENST00000540387 CFAP53Q96M91 514 aa11.45□□□□□ -0.58
CTNNA1-243ENST00000540387 TAOK2Q9UL54 1235 aa11.45□□□□□ -0.58
CTNNA1-243ENST00000540387 KRT222Q8N1A0 295 aa11.44□□□□□ -0.58
CTNNA1-243ENST00000540387 KIF18AQ8NI77 898 aa11.44□□□□□ -0.58
CTNNA1-243ENST00000540387 CNKSR2Q8WXI2 1034 aa11.44□□□□□ -0.58
CTNNA1-243ENST00000540387 LOC102724159A0A0B4J2E5 919 aa11.44□□□□□ -0.58
CTNNA1-243ENST00000540387 KCNA4P22459 653 aa11.44□□□□□ -0.58
CTNNA1-243ENST00000540387 TNNT3P45378 269 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms