RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 RAB3GAP1Q15042 981 aa15.5■□□□□ 0.07
SFSWAP-208ENST00000539506 NLRP6P59044 892 aa15.5■□□□□ 0.07
SFSWAP-208ENST00000539506 PODXL2Q9NZ53 605 aa15.5■□□□□ 0.07
SFSWAP-208ENST00000539506 SLC4A10Q6U841 1118 aa15.49■□□□□ 0.07
SFSWAP-208ENST00000539506 NOL8Q76FK4 1167 aaKnown RBP15.49■□□□□ 0.07
SFSWAP-208ENST00000539506 RTF1Q92541 710 aaKnown RBP15.49■□□□□ 0.07
SFSWAP-208ENST00000539506 SDSP20132 328 aa15.48■□□□□ 0.07
SFSWAP-208ENST00000539506 NWD1Q149M9 1564 aa15.48■□□□□ 0.07
SFSWAP-208ENST00000539506 K7ELQ4 463 aaPredicted RBP15.48■□□□□ 0.07
SFSWAP-208ENST00000539506 DNAJC5Q9H3Z4 198 aa15.48■□□□□ 0.07
SFSWAP-208ENST00000539506 MARF1Q9Y4F3 1742 aaKnown RBP15.48■□□□□ 0.07
SFSWAP-208ENST00000539506 HOXC9P31274 260 aa15.48■□□□□ 0.07
SFSWAP-208ENST00000539506 HAP1P54257 671 aaPredicted RBP15.48■□□□□ 0.07
SFSWAP-208ENST00000539506 NECTIN2Q92692 538 aa15.48■□□□□ 0.07
SFSWAP-208ENST00000539506 FAM13BQ9NYF5 915 aa15.47■□□□□ 0.07
SFSWAP-208ENST00000539506 R3HCC1Q9Y3T6 440 aaKnown RBP15.47■□□□□ 0.07
SFSWAP-208ENST00000539506 IL17REQ8NFR9 667 aa15.47■□□□□ 0.07
SFSWAP-208ENST00000539506 USP26Q9BXU7 913 aa15.46■□□□□ 0.07
SFSWAP-208ENST00000539506 BAG4O95429 457 aaKnown RBP15.46■□□□□ 0.07
SFSWAP-208ENST00000539506 XPCQ01831 940 aaPredicted RBP15.46■□□□□ 0.07
SFSWAP-208ENST00000539506 ZGPATQ8N5A5 531 aaKnown RBP15.46■□□□□ 0.07
SFSWAP-208ENST00000539506 RNF214Q8ND24 703 aa15.46■□□□□ 0.07
SFSWAP-208ENST00000539506 RBM33Q96EV2 1170 aaKnown RBP15.46■□□□□ 0.07
SFSWAP-208ENST00000539506 AK9Q5TCS8 1911 aa15.46■□□□□ 0.07
SFSWAP-208ENST00000539506 XRN1Q8IZH2 1706 aaKnown RBP15.45■□□□□ 0.06
SFSWAP-208ENST00000539506 PRPF40AO75400 957 aaKnown RBP15.45■□□□□ 0.06
SFSWAP-208ENST00000539506 THEMISQ8N1K5 641 aaPredicted RBP15.45■□□□□ 0.06
SFSWAP-208ENST00000539506 LTV1Q96GA3 475 aaPredicted RBP15.45■□□□□ 0.06
SFSWAP-208ENST00000539506 USHBP1Q8N6Y0 703 aa15.45■□□□□ 0.06
SFSWAP-208ENST00000539506 RRP9O43818 475 aaKnown RBP15.44■□□□□ 0.06
SFSWAP-208ENST00000539506 DTNBO60941 627 aa15.44■□□□□ 0.06
SFSWAP-208ENST00000539506 TSHZ3Q63HK5 1081 aa15.44■□□□□ 0.06
SFSWAP-208ENST00000539506 GNAT3A8MTJ3 354 aa15.43■□□□□ 0.06
SFSWAP-208ENST00000539506 MSNP26038 577 aaKnown RBP15.43■□□□□ 0.06
SFSWAP-208ENST00000539506 ANP32BQ92688 251 aaKnown RBP15.43■□□□□ 0.06
SFSWAP-208ENST00000539506 FLIIQ13045 1269 aa15.43■□□□□ 0.06
SFSWAP-208ENST00000539506 ABTB2Q8N961 1025 aa15.43■□□□□ 0.06
SFSWAP-208ENST00000539506 EXOC6BQ9Y2D4 811 aa15.43■□□□□ 0.06
SFSWAP-208ENST00000539506 LRRC37A3O60309 1634 aa15.43■□□□□ 0.06
SFSWAP-208ENST00000539506 PNMA6EA0A0J9YXQ4 647 aa15.42■□□□□ 0.06
SFSWAP-208ENST00000539506 GOLGA6L22H0YM25 854 aa15.42■□□□□ 0.06
SFSWAP-208ENST00000539506 CCT4P50991 539 aaKnown RBP15.42■□□□□ 0.06
SFSWAP-208ENST00000539506 RBSNQ9H1K0 784 aa15.42■□□□□ 0.06
SFSWAP-208ENST00000539506 PRIM1P49642 420 aaKnown RBP15.41■□□□□ 0.06
SFSWAP-208ENST00000539506 CIZ1Q9ULV3 898 aaPredicted RBP15.41■□□□□ 0.06
SFSWAP-208ENST00000539506 NSFL1CQ9UNZ2 370 aaKnown RBP15.41■□□□□ 0.06
SFSWAP-208ENST00000539506 JARID2Q92833 1246 aaPredicted RBP15.41■□□□□ 0.06
SFSWAP-208ENST00000539506 FER1L4A9Z1Z3 1794 aa15.41■□□□□ 0.06
SFSWAP-208ENST00000539506 HTATSF1O43719 755 aaKnown RBP15.41■□□□□ 0.06
SFSWAP-208ENST00000539506 PDE1AP54750 535 aa15.41■□□□□ 0.06
SFSWAP-208ENST00000539506 ANKARQ7Z5J8 1434 aa15.41■□□□□ 0.06
SFSWAP-208ENST00000539506 FKBP5Q13451 457 aaPredicted RBP15.4■□□□□ 0.06
SFSWAP-208ENST00000539506 SALL3Q9BXA9 1300 aa15.4■□□□□ 0.06
SFSWAP-208ENST00000539506 GNAI2P04899 355 aa15.39■□□□□ 0.05
SFSWAP-208ENST00000539506 STK31Q9BXU1 1019 aa15.39■□□□□ 0.05
SFSWAP-208ENST00000539506 MAP3K5Q99683 1374 aa15.39■□□□□ 0.05
SFSWAP-208ENST00000539506 SKOR2Q2VWA4 1001 aaPredicted RBP15.39■□□□□ 0.05
SFSWAP-208ENST00000539506 OSBPL3Q9H4L5 887 aa15.39■□□□□ 0.05
SFSWAP-208ENST00000539506 FAM208AQ9UK61 1670 aaKnown RBP15.39■□□□□ 0.05
SFSWAP-208ENST00000539506 ZSCAN23Q3MJ62 389 aa15.39■□□□□ 0.05
SFSWAP-208ENST00000539506 PHAXQ9H814 394 aaKnown RBP15.39■□□□□ 0.05
SFSWAP-208ENST00000539506 RABEP1Q15276 862 aa15.38■□□□□ 0.05
SFSWAP-208ENST00000539506 CCDC30Q5VVM6 783 aa15.38■□□□□ 0.05
SFSWAP-208ENST00000539506 ZSCAN30Q86W11 494 aa15.38■□□□□ 0.05
SFSWAP-208ENST00000539506 SYCE3A1L190 88 aa15.38■□□□□ 0.05
SFSWAP-208ENST00000539506 HMMRO75330 724 aa15.38■□□□□ 0.05
SFSWAP-208ENST00000539506 TAF7Q15545 349 aaPredicted RBP15.38■□□□□ 0.05
SFSWAP-208ENST00000539506 C14orf37Q86TY3 774 aa15.38■□□□□ 0.05
SFSWAP-208ENST00000539506 CCDC173Q0VFZ6 552 aa15.37■□□□□ 0.05
SFSWAP-208ENST00000539506 NBPF6Q5VWK0 638 aa15.37■□□□□ 0.05
SFSWAP-208ENST00000539506 NBPF4Q96M43 638 aa15.37■□□□□ 0.05
SFSWAP-208ENST00000539506 USP44Q9H0E7 712 aa15.37■□□□□ 0.05
SFSWAP-208ENST00000539506 LGR6Q9HBX8 967 aa15.37■□□□□ 0.05
SFSWAP-208ENST00000539506 GDPD2Q9HCC8 539 aa15.37■□□□□ 0.05
SFSWAP-208ENST00000539506 LRRFIP2Q9Y608 721 aaKnown RBP15.37■□□□□ 0.05
SFSWAP-208ENST00000539506 ATP8B2P98198 1209 aa15.36■□□□□ 0.05
SFSWAP-208ENST00000539506 TSC1Q92574 1164 aa15.36■□□□□ 0.05
SFSWAP-208ENST00000539506 KLHL40Q2TBA0 621 aa15.35■□□□□ 0.05
SFSWAP-208ENST00000539506 GPT2Q8TD30 523 aa15.35■□□□□ 0.05
SFSWAP-208ENST00000539506 PHF8Q9UPP1 1060 aa15.35■□□□□ 0.05
SFSWAP-208ENST00000539506 USP54Q70EL1 1684 aa15.35■□□□□ 0.05
SFSWAP-208ENST00000539506 KCNQ3O43525 872 aa15.35■□□□□ 0.05
SFSWAP-208ENST00000539506 LMBRD1Q9NUN5 540 aa15.35■□□□□ 0.05
SFSWAP-208ENST00000539506 FAM177BA6PVY3 158 aa15.34■□□□□ 0.05
SFSWAP-208ENST00000539506 UNC5CLQ8IV45 518 aa15.34■□□□□ 0.05
SFSWAP-208ENST00000539506 PRDM10Q9NQV6 1147 aa15.34■□□□□ 0.05
SFSWAP-208ENST00000539506 IBTKQ9P2D0 1353 aaPredicted RBP15.34■□□□□ 0.05
SFSWAP-208ENST00000539506 ERC2O15083 957 aa15.34■□□□□ 0.05
SFSWAP-208ENST00000539506 ZNF830Q96NB3 372 aaPredicted RBP15.34■□□□□ 0.05
SFSWAP-208ENST00000539506 LRRCC1Q9C099 1032 aa15.34■□□□□ 0.05
SFSWAP-208ENST00000539506 CEMIPQ8WUJ3 1361 aa15.33■□□□□ 0.05
SFSWAP-208ENST00000539506 CLEC17AQ6ZS10 378 aa15.33■□□□□ 0.05
SFSWAP-208ENST00000539506 GNAI3P08754 354 aa15.33■□□□□ 0.04
SFSWAP-208ENST00000539506 HDGFL1Q5TGJ6 251 aa15.33■□□□□ 0.04
SFSWAP-208ENST00000539506 IP6K1Q92551 441 aa15.33■□□□□ 0.04
SFSWAP-208ENST00000539506 LRRC59Q96AG4 307 aaKnown RBP15.33■□□□□ 0.04
SFSWAP-208ENST00000539506 LARP6Q9BRS8 491 aaKnown RBP15.33■□□□□ 0.04
SFSWAP-208ENST00000539506 TUBGCP6Q96RT7 1819 aa15.33■□□□□ 0.04
SFSWAP-208ENST00000539506 LTN1O94822 1766 aa15.32■□□□□ 0.04
SFSWAP-208ENST00000539506 CYP2E1P05181 493 aaPredicted RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms