RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 COL24A1Q17RW2 1714 aa15.56■□□□□ 0.08
RTN3-209ENST00000538995 ZNF831Q5JPB2 1677 aa15.55■□□□□ 0.08
RTN3-209ENST00000538995 MRC1P22897 1456 aa15.55■□□□□ 0.08
RTN3-209ENST00000538995 ADRA2BP18089 450 aa15.55■□□□□ 0.08
RTN3-209ENST00000538995 CNGB1Q14028 1251 aaPredicted RBP15.55■□□□□ 0.08
RTN3-209ENST00000538995 ARXQ96QS3 562 aa15.55■□□□□ 0.08
RTN3-209ENST00000538995 PPP2R1AP30153 589 aa15.54■□□□□ 0.08
RTN3-209ENST00000538995 ATP6V1AP38606 617 aa15.54■□□□□ 0.08
RTN3-209ENST00000538995 COL23A1Q86Y22 540 aaPredicted RBP15.54■□□□□ 0.08
RTN3-209ENST00000538995 LINC00116Q8NCU8 138 aa15.54■□□□□ 0.08
RTN3-209ENST00000538995 U2SURPO15042 1029 aaKnown RBP15.53■□□□□ 0.08
RTN3-209ENST00000538995 SSFA2P28290 1259 aa15.53■□□□□ 0.08
RTN3-209ENST00000538995 ITPK1Q13572 414 aa15.53■□□□□ 0.08
RTN3-209ENST00000538995 FHDC1Q9C0D6 1143 aaPredicted RBP15.53■□□□□ 0.08
RTN3-209ENST00000538995 DCAF8L1A6NGE4 600 aa15.52■□□□□ 0.08
RTN3-209ENST00000538995 MTHFSDQ2M296 383 aaKnown RBP15.52■□□□□ 0.08
RTN3-209ENST00000538995 SYT17Q9BSW7 474 aa15.52■□□□□ 0.08
RTN3-209ENST00000538995 SLC52A2Q9HAB3 445 aa15.52■□□□□ 0.08
RTN3-209ENST00000538995 NUDCQ9Y266 331 aa15.52■□□□□ 0.08
RTN3-209ENST00000538995 SCN11AQ9UI33 1791 aa15.52■□□□□ 0.07
RTN3-209ENST00000538995 ADAMTS7Q9UKP4 1686 aa15.51■□□□□ 0.07
RTN3-209ENST00000538995 NFATC2IPQ8NCF5 419 aa15.51■□□□□ 0.07
RTN3-209ENST00000538995 GAS2L2Q8NHY3 880 aa15.51■□□□□ 0.07
RTN3-209ENST00000538995 CICQ96RK0 1608 aaPredicted RBP15.5■□□□□ 0.07
RTN3-209ENST00000538995 CNTNAP4Q9C0A0 1308 aa15.5■□□□□ 0.07
RTN3-209ENST00000538995 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.5■□□□□ 0.07
RTN3-209ENST00000538995 RNMTO43148 476 aaKnown RBP15.5■□□□□ 0.07
RTN3-209ENST00000538995 SLC4A9Q96Q91 983 aa15.5■□□□□ 0.07
RTN3-209ENST00000538995 RBM42Q9BTD8 480 aaKnown RBP15.5■□□□□ 0.07
RTN3-209ENST00000538995 UBR3Q6ZT12 1888 aa15.5■□□□□ 0.07
RTN3-209ENST00000538995 GNPATO15228 680 aa15.49■□□□□ 0.07
RTN3-209ENST00000538995 RC3H1Q5TC82 1133 aaKnown RBP15.49■□□□□ 0.07
RTN3-209ENST00000538995 AMIGO3Q86WK7 504 aa15.49■□□□□ 0.07
RTN3-209ENST00000538995 PHF14O94880 888 aa15.48■□□□□ 0.07
RTN3-209ENST00000538995 RSPH6AQ9H0K4 717 aa15.48■□□□□ 0.07
RTN3-209ENST00000538995 LGR6Q9HBX8 967 aa15.48■□□□□ 0.07
RTN3-209ENST00000538995 COL5A3P25940 1745 aaPredicted RBP15.47■□□□□ 0.07
RTN3-209ENST00000538995 RTCBQ9Y3I0 505 aaKnown RBP15.47■□□□□ 0.07
RTN3-209ENST00000538995 GNAT3A8MTJ3 354 aa15.46■□□□□ 0.07
RTN3-209ENST00000538995 PTCD1O75127 700 aaKnown RBP15.46■□□□□ 0.07
RTN3-209ENST00000538995 FCHSD2O94868 740 aa15.46■□□□□ 0.07
RTN3-209ENST00000538995 U2AF1L5P0DN76 240 aaPredicted RBP15.46■□□□□ 0.07
RTN3-209ENST00000538995 PRKAR2BP31323 418 aa15.46■□□□□ 0.07
RTN3-209ENST00000538995 U2AF1Q01081 240 aaKnown RBP eCLIP15.46■□□□□ 0.07
RTN3-209ENST00000538995 MSL1Q68DK7 614 aa15.46■□□□□ 0.07
RTN3-209ENST00000538995 KCPQ6ZWJ8 1503 aa15.44■□□□□ 0.06
RTN3-209ENST00000538995 RPS6KA4O75676 772 aa15.44■□□□□ 0.06
RTN3-209ENST00000538995 RALBP1Q15311 655 aa15.44■□□□□ 0.06
RTN3-209ENST00000538995 CEMIPQ8WUJ3 1361 aa15.44■□□□□ 0.06
RTN3-209ENST00000538995 CRKLP46109 303 aaKnown RBP15.43■□□□□ 0.06
RTN3-209ENST00000538995 TEFQ10587 303 aa15.43■□□□□ 0.06
RTN3-209ENST00000538995 TRAPPC3LQ5T215 181 aa15.43■□□□□ 0.06
RTN3-209ENST00000538995 VSIG10Q8N0Z9 540 aa15.43■□□□□ 0.06
RTN3-209ENST00000538995 PHACTR3Q96KR7 559 aa15.43■□□□□ 0.06
RTN3-209ENST00000538995 TJP1Q07157 1748 aa15.43■□□□□ 0.06
RTN3-209ENST00000538995 KLHL34Q8N239 644 aa15.42■□□□□ 0.06
RTN3-209ENST00000538995 IL17REQ8NFR9 667 aa15.42■□□□□ 0.06
RTN3-209ENST00000538995 CD2APQ9Y5K6 639 aa15.42■□□□□ 0.06
RTN3-209ENST00000538995 SLC39A6Q13433 755 aa15.41■□□□□ 0.06
RTN3-209ENST00000538995 SMIM5Q71RC9 77 aa15.41■□□□□ 0.06
RTN3-209ENST00000538995 TTC5Q8N0Z6 440 aa15.41■□□□□ 0.06
RTN3-209ENST00000538995 UTRNP46939 3433 aa15.4■□□□□ 0.06
RTN3-209ENST00000538995 ZEB1P37275 1124 aaPredicted RBP15.4■□□□□ 0.06
RTN3-209ENST00000538995 NLGN1Q8N2Q7 840 aa15.4■□□□□ 0.06
RTN3-209ENST00000538995 ARHGEF1Q92888 912 aaKnown RBP15.4■□□□□ 0.06
RTN3-209ENST00000538995 UBR2Q8IWV8 1755 aa15.39■□□□□ 0.05
RTN3-209ENST00000538995 VIRMAQ69YN4 1812 aaKnown RBP15.39■□□□□ 0.05
RTN3-209ENST00000538995 HTATSF1O43719 755 aaKnown RBP15.39■□□□□ 0.05
RTN3-209ENST00000538995 RFC4P35249 363 aa15.39■□□□□ 0.05
RTN3-209ENST00000538995 DDX10Q13206 875 aaKnown RBP15.39■□□□□ 0.05
RTN3-209ENST00000538995 ZNF790Q6PG37 636 aa15.39■□□□□ 0.05
RTN3-209ENST00000538995 DNAJC10Q8IXB1 793 aa15.39■□□□□ 0.05
RTN3-209ENST00000538995 NLGN2Q8NFZ4 835 aa15.39■□□□□ 0.05
RTN3-209ENST00000538995 CCDC87Q9NVE4 849 aa15.39■□□□□ 0.05
RTN3-209ENST00000538995 NEFMP07197 916 aa15.38■□□□□ 0.05
RTN3-209ENST00000538995 CYP19A1P11511 503 aaPredicted RBP15.38■□□□□ 0.05
RTN3-209ENST00000538995 INTS5Q6P9B9 1019 aaKnown RBP15.38■□□□□ 0.05
RTN3-209ENST00000538995 RTF1Q92541 710 aaKnown RBP15.38■□□□□ 0.05
RTN3-209ENST00000538995 MYH14Q7Z406 1995 aaKnown RBP15.38■□□□□ 0.05
RTN3-209ENST00000538995 SIPA1L3O60292 1781 aaPredicted RBP15.37■□□□□ 0.05
RTN3-209ENST00000538995 MMP10P09238 476 aa15.37■□□□□ 0.05
RTN3-209ENST00000538995 GYS1P13807 737 aa15.37■□□□□ 0.05
RTN3-209ENST00000538995 YY1P25490 414 aa15.37■□□□□ 0.05
RTN3-209ENST00000538995 PNNQ9H307 717 aaKnown RBP15.37■□□□□ 0.05
RTN3-209ENST00000538995 SOS1Q07889 1333 aaPredicted RBP15.37■□□□□ 0.05
RTN3-209ENST00000538995 USP42Q9H9J4 1324 aaKnown RBP15.37■□□□□ 0.05
RTN3-209ENST00000538995 C4AP0C0L4 1744 aa15.37■□□□□ 0.05
RTN3-209ENST00000538995 HEG1Q9ULI3 1381 aa15.36■□□□□ 0.05
RTN3-209ENST00000538995 STARD3NLO95772 234 aa15.36■□□□□ 0.05
RTN3-209ENST00000538995 GPR162Q16538 588 aa15.36■□□□□ 0.05
RTN3-209ENST00000538995 TEX13AQ9BXU3 409 aaPredicted RBP15.36■□□□□ 0.05
RTN3-209ENST00000538995 MYBBP1AQ9BQG0 1328 aaKnown RBP15.36■□□□□ 0.05
RTN3-209ENST00000538995 GOLGB1Q14789 3259 aaKnown RBP15.35■□□□□ 0.05
RTN3-209ENST00000538995 ZNF496Q96IT1 587 aaPredicted RBP15.35■□□□□ 0.05
RTN3-209ENST00000538995 FMNL2Q96PY5 1086 aa15.35■□□□□ 0.05
RTN3-209ENST00000538995 PLEKHF1Q96S99 279 aa15.35■□□□□ 0.05
RTN3-209ENST00000538995 BTBD11A6QL63 1104 aa15.34■□□□□ 0.05
RTN3-209ENST00000538995 ZBTB1Q9Y2K1 713 aa15.34■□□□□ 0.05
RTN3-209ENST00000538995 COL15A1P39059 1388 aa15.34■□□□□ 0.05
RTN3-209ENST00000538995 C10orf71Q711Q0 1435 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms