RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 SBNO1A3KN83 1393 aa9.1□□□□□ -0.95
MSH6-209ENST00000538136 PNPLA6Q8IY17 1366 aa9.1□□□□□ -0.95
MSH6-209ENST00000538136 IQGAP3Q86VI3 1631 aa9.1□□□□□ -0.95
MSH6-209ENST00000538136 PREX1Q8TCU6 1659 aa9.1□□□□□ -0.95
MSH6-209ENST00000538136 A0A087WZG4 1122 aa9.1□□□□□ -0.95
MSH6-209ENST00000538136 USPL1Q5W0Q7 1092 aa9.1□□□□□ -0.95
MSH6-209ENST00000538136 RSPH6AQ9H0K4 717 aa9.1□□□□□ -0.95
MSH6-209ENST00000538136 CNNM1Q9NRU3 951 aa9.1□□□□□ -0.95
MSH6-209ENST00000538136 RIMBP2O15034 1052 aa9.09□□□□□ -0.95
MSH6-209ENST00000538136 CHAF1AQ13111 956 aaPredicted RBP9.09□□□□□ -0.95
MSH6-209ENST00000538136 VPS72Q15906 364 aa9.09□□□□□ -0.95
MSH6-209ENST00000538136 PDGFDQ9GZP0 370 aaPredicted RBP9.09□□□□□ -0.95
MSH6-209ENST00000538136 FAM135BQ49AJ0 1406 aa9.09□□□□□ -0.95
MSH6-209ENST00000538136 SLC4A8Q2Y0W8 1093 aa9.09□□□□□ -0.95
MSH6-209ENST00000538136 TTLL7Q6ZT98 887 aa9.09□□□□□ -0.95
MSH6-209ENST00000538136 ANKIB1Q9P2G1 1089 aa9.09□□□□□ -0.95
MSH6-209ENST00000538136 SPATA31D1Q6ZQQ2 1576 aa9.09□□□□□ -0.96
MSH6-209ENST00000538136 RBM5P52756 815 aaKnown RBP eCLIP9.08□□□□□ -0.96
MSH6-209ENST00000538136 SSH1Q8WYL5 1049 aa9.08□□□□□ -0.96
MSH6-209ENST00000538136 MPHOSPH8Q99549 860 aa9.08□□□□□ -0.96
MSH6-209ENST00000538136 MTMR7Q9Y216 660 aa9.08□□□□□ -0.96
MSH6-209ENST00000538136 SPATA31A1Q5TZJ5 1347 aa9.08□□□□□ -0.96
MSH6-209ENST00000538136 F8W031 263 aaPredicted RBP9.08□□□□□ -0.96
MSH6-209ENST00000538136 G2E3Q7L622 706 aa9.08□□□□□ -0.96
MSH6-209ENST00000538136 SMARCC1Q92922 1105 aaPredicted RBP9.08□□□□□ -0.96
MSH6-209ENST00000538136 MAP3K2Q9Y2U5 619 aa9.08□□□□□ -0.96
MSH6-209ENST00000538136 PARP3Q9Y6F1 533 aa9.08□□□□□ -0.96
MSH6-209ENST00000538136 NEXMIFQ5QGS0 1516 aa9.08□□□□□ -0.96
MSH6-209ENST00000538136 SIGLEC1Q9BZZ2 1709 aa9.08□□□□□ -0.96
MSH6-209ENST00000538136 TULP1O00294 542 aaPredicted RBP9.08□□□□□ -0.96
MSH6-209ENST00000538136 SLC52A2Q9HAB3 445 aa9.08□□□□□ -0.96
MSH6-209ENST00000538136 NSFL1CQ9UNZ2 370 aaKnown RBP9.08□□□□□ -0.96
MSH6-209ENST00000538136 SKAP1Q86WV1 359 aa9.07□□□□□ -0.96
MSH6-209ENST00000538136 TRIM6-TRIM34B2RNG4 842 aa9.07□□□□□ -0.96
MSH6-209ENST00000538136 MMP10P09238 476 aa9.07□□□□□ -0.96
MSH6-209ENST00000538136 UBTFL1P0CB47 393 aaPredicted RBP9.07□□□□□ -0.96
MSH6-209ENST00000538136 PROSER3Q2NL68 480 aa9.07□□□□□ -0.96
MSH6-209ENST00000538136 ZKSCAN2Q63HK3 967 aa9.07□□□□□ -0.96
MSH6-209ENST00000538136 ANKRD13DQ6ZTN6 518 aa9.07□□□□□ -0.96
MSH6-209ENST00000538136 EXOC6Q8TAG9 804 aa9.07□□□□□ -0.96
MSH6-209ENST00000538136 RPGRQ92834 1020 aaKnown RBP9.07□□□□□ -0.96
MSH6-209ENST00000538136 TOMM22Q9NS69 142 aa9.07□□□□□ -0.96
MSH6-209ENST00000538136 CROCC2H7BZ55 1655 aa9.07□□□□□ -0.96
MSH6-209ENST00000538136 MROH1Q8NDA8 1641 aa9.07□□□□□ -0.96
MSH6-209ENST00000538136 SPHKAPQ2M3C7 1700 aa9.07□□□□□ -0.96
MSH6-209ENST00000538136 CRKLP46109 303 aaKnown RBP9.06□□□□□ -0.96
MSH6-209ENST00000538136 CCDC27Q2M243 656 aa9.06□□□□□ -0.96
MSH6-209ENST00000538136 IL1RAPL2Q9NP60 686 aa9.06□□□□□ -0.96
MSH6-209ENST00000538136 DAXXQ9UER7 740 aaPredicted RBP9.06□□□□□ -0.96
MSH6-209ENST00000538136 SURF6O75683 361 aaKnown RBP9.06□□□□□ -0.96
MSH6-209ENST00000538136 ARHGAP27Q6ZUM4 889 aa9.06□□□□□ -0.96
MSH6-209ENST00000538136 SYNE4Q8N205 404 aa9.06□□□□□ -0.96
MSH6-209ENST00000538136 CRBNQ96SW2 442 aa9.06□□□□□ -0.96
MSH6-209ENST00000538136 CLEC11AQ9Y240 323 aa9.06□□□□□ -0.96
MSH6-209ENST00000538136 FANCIQ9NVI1 1328 aa9.06□□□□□ -0.96
MSH6-209ENST00000538136 UTRNP46939 3433 aa9.06□□□□□ -0.96
MSH6-209ENST00000538136 CDCA7Q9BWT1 371 aaPredicted RBP9.05□□□□□ -0.96
MSH6-209ENST00000538136 BRD4O60885 1362 aaPredicted RBP9.05□□□□□ -0.96
MSH6-209ENST00000538136 GJA3Q9Y6H8 435 aa9.05□□□□□ -0.96
MSH6-209ENST00000538136 LMTK2Q8IWU2 1503 aa9.05□□□□□ -0.96
MSH6-209ENST00000538136 SPATA31A5Q5VU36 1347 aa9.05□□□□□ -0.96
MSH6-209ENST00000538136 SPATA31A7Q8IWB4 1347 aa9.05□□□□□ -0.96
MSH6-209ENST00000538136 UNC13BO14795 1591 aa9.05□□□□□ -0.96
MSH6-209ENST00000538136 ANKRD45Q5TZF3 282 aa9.05□□□□□ -0.96
MSH6-209ENST00000538136 KLHDC4Q8TBB5 520 aa9.05□□□□□ -0.96
MSH6-209ENST00000538136 MAP4K4O95819 1239 aaPredicted RBP9.05□□□□□ -0.96
MSH6-209ENST00000538136 SLC4A3P48751 1232 aa9.05□□□□□ -0.96
MSH6-209ENST00000538136 DZIP1LQ8IYY4 767 aaKnown RBP9.05□□□□□ -0.96
MSH6-209ENST00000538136 SRCIN1Q9C0H9 1055 aa9.05□□□□□ -0.96
MSH6-209ENST00000538136 ABCF2Q9UG63 623 aa9.05□□□□□ -0.96
MSH6-209ENST00000538136 FLIIQ13045 1269 aa9.04□□□□□ -0.96
MSH6-209ENST00000538136 C20orf194Q5TEA3 1177 aa9.04□□□□□ -0.96
MSH6-209ENST00000538136 ZNF652Q9Y2D9 606 aa9.04□□□□□ -0.96
MSH6-209ENST00000538136 CCDC87Q9NVE4 849 aa9.04□□□□□ -0.96
MSH6-209ENST00000538136 DBF4Q9UBU7 674 aaPredicted RBP9.04□□□□□ -0.96
MSH6-209ENST00000538136 CCDC57Q2TAC2 916 aa9.04□□□□□ -0.96
MSH6-209ENST00000538136 RILPL2Q969X0 211 aa9.04□□□□□ -0.96
MSH6-209ENST00000538136 ZNF408Q9H9D4 720 aa9.04□□□□□ -0.96
MSH6-209ENST00000538136 ATG3Q9NT62 314 aa9.04□□□□□ -0.96
MSH6-209ENST00000538136 EXOC6BQ9Y2D4 811 aa9.04□□□□□ -0.96
MSH6-209ENST00000538136 NINLQ9Y2I6 1382 aa9.03□□□□□ -0.96
MSH6-209ENST00000538136 MYO3AQ8NEV4 1616 aa9.03□□□□□ -0.96
MSH6-209ENST00000538136 MYOM2P54296 1465 aa9.03□□□□□ -0.96
MSH6-209ENST00000538136 CFAP44Q96MT7 982 aa9.03□□□□□ -0.96
MSH6-209ENST00000538136 INSRP06213 1382 aa9.03□□□□□ -0.96
MSH6-209ENST00000538136 CNBD1Q8NA66 436 aa9.03□□□□□ -0.96
MSH6-209ENST00000538136 SNRKQ9NRH2 765 aa9.03□□□□□ -0.96
MSH6-209ENST00000538136 TMEM131LA2VDJ0 1609 aa9.03□□□□□ -0.96
MSH6-209ENST00000538136 PALLDQ8WX93 1383 aa9.03□□□□□ -0.96
MSH6-209ENST00000538136 SRGAP3O43295 1099 aa9.03□□□□□ -0.96
MSH6-209ENST00000538136 LNPKQ9C0E8 428 aa9.03□□□□□ -0.96
MSH6-209ENST00000538136 A0A0G2JLW4 131 aa9.02□□□□□ -0.96
MSH6-209ENST00000538136 G3BP1Q13283 466 aaKnown RBP eCLIP9.02□□□□□ -0.968e-7■■■■□ 19.7
MSH6-209ENST00000538136 MAP3K5Q99683 1374 aa9.02□□□□□ -0.97
MSH6-209ENST00000538136 CPS1P31327 1500 aa9.02□□□□□ -0.97
MSH6-209ENST00000538136 ATP7BP35670 1465 aa9.02□□□□□ -0.97
MSH6-209ENST00000538136 CHRNA5P30532 468 aa9.02□□□□□ -0.97
MSH6-209ENST00000538136 PRKG1Q13976 671 aa9.02□□□□□ -0.97
MSH6-209ENST00000538136 ARHGAP23Q9P227 1491 aa9.02□□□□□ -0.97
MSH6-209ENST00000538136 MYO5BQ9ULV0 1848 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms