RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 HMX1Q9NP08 348 aaPredicted RBP7.87□□□□□ -1.15
USP48-215ENST00000534705 PCDHB9Q9Y5E1 797 aa7.87□□□□□ -1.15
USP48-215ENST00000534705 ZBBXA8MT70 800 aa7.86□□□□□ -1.15
USP48-215ENST00000534705 GRIN2CQ14957 1233 aa7.86□□□□□ -1.15
USP48-215ENST00000534705 AMPD1P23109 780 aa7.85□□□□□ -1.15
USP48-215ENST00000534705 C1orf229Q6ZS94 237 aaPredicted RBP7.85□□□□□ -1.15
USP48-215ENST00000534705 A0A1B0GTH6 734 aa7.84□□□□□ -1.15
USP48-215ENST00000534705 LINC00114Q6XXX2 140 aa7.84□□□□□ -1.15
USP48-215ENST00000534705 GNB5O14775 395 aa7.83□□□□□ -1.16
USP48-215ENST00000534705 CSB-PGBD3P0DP91 1061 aa7.83□□□□□ -1.16
USP48-215ENST00000534705 GTF2E1P29083 439 aaPredicted RBP7.83□□□□□ -1.16
USP48-215ENST00000534705 PGBD3Q8N328 593 aa7.83□□□□□ -1.16
USP48-215ENST00000534705 NOP53Q9NZM5 478 aaKnown RBP7.83□□□□□ -1.16
USP48-215ENST00000534705 ATXN7L1Q9ULK2 861 aaPredicted RBP7.83□□□□□ -1.16
USP48-215ENST00000534705 C1QTNF9BB2RNN3 333 aa7.82□□□□□ -1.16
USP48-215ENST00000534705 GNRH1P01148 92 aa7.82□□□□□ -1.16
USP48-215ENST00000534705 BMP4P12644 408 aa7.82□□□□□ -1.16
USP48-215ENST00000534705 ESYT1Q9BSJ8 1104 aa7.82□□□□□ -1.16
USP48-215ENST00000534705 ARHGEF10LQ9HCE6 1279 aa7.82□□□□□ -1.16
USP48-215ENST00000534705 TRAK2O60296 914 aa7.81□□□□□ -1.16
USP48-215ENST00000534705 SLCO4C1Q6ZQN7 724 aa7.81□□□□□ -1.16
USP48-215ENST00000534705 SUV39H2Q9H5I1 410 aa7.81□□□□□ -1.16
USP48-215ENST00000534705 GPAMQ9HCL2 828 aa7.81□□□□□ -1.16
USP48-215ENST00000534705 ZNF330Q9Y3S2 320 aaPredicted RBP7.81□□□□□ -1.16
USP48-215ENST00000534705 THBS1P07996 1170 aa7.8□□□□□ -1.16
USP48-215ENST00000534705 RFC5P40937 340 aa7.8□□□□□ -1.16
USP48-215ENST00000534705 CENPCQ03188 943 aa7.8□□□□□ -1.16
USP48-215ENST00000534705 EFHC2Q5JST6 749 aa7.8□□□□□ -1.16
USP48-215ENST00000534705 GNASQ5JWF2 1037 aa7.8□□□□□ -1.16
USP48-215ENST00000534705 CD163Q86VB7 1156 aa7.8□□□□□ -1.16
USP48-215ENST00000534705 CNKSR1Q969H4 720 aa7.8□□□□□ -1.16
USP48-215ENST00000534705 BTBD6Q96KE9 485 aa7.8□□□□□ -1.16
USP48-215ENST00000534705 ZSCAN10Q96SZ4 725 aaPredicted RBP7.8□□□□□ -1.16
USP48-215ENST00000534705 TRIM34Q9BYJ4 488 aa7.8□□□□□ -1.16
USP48-215ENST00000534705 OSBPL3Q9H4L5 887 aa7.8□□□□□ -1.16
USP48-215ENST00000534705 PCDHB11Q9Y5F2 797 aa7.8□□□□□ -1.16
USP48-215ENST00000534705 FBXO45P0C2W1 286 aa7.79□□□□□ -1.16
USP48-215ENST00000534705 HOXB4P17483 251 aaPredicted RBP7.79□□□□□ -1.16
USP48-215ENST00000534705 TMEM259Q4ZIN3 620 aa7.79□□□□□ -1.16
USP48-215ENST00000534705 IL27Q8NEV9 243 aa7.79□□□□□ -1.16
USP48-215ENST00000534705 GGA1Q9UJY5 639 aa7.79□□□□□ -1.16
USP48-215ENST00000534705 PHKA2P46019 1235 aa7.78□□□□□ -1.16
USP48-215ENST00000534705 SCTRP47872 440 aa7.78□□□□□ -1.16
USP48-215ENST00000534705 UBAP2LQ14157 1087 aaKnown RBP7.78□□□□□ -1.16
USP48-215ENST00000534705 PCMTD1Q96MG8 357 aaPredicted RBP7.78□□□□□ -1.16
USP48-215ENST00000534705 KRTAP9-2Q9BYQ4 174 aa7.78□□□□□ -1.16
USP48-215ENST00000534705 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.77□□□□□ -1.17
USP48-215ENST00000534705 EPXP11678 715 aa7.77□□□□□ -1.17
USP48-215ENST00000534705 FGFR3P22607 806 aa7.77□□□□□ -1.17
USP48-215ENST00000534705 SEMA6BQ9H3T3 888 aa7.77□□□□□ -1.17
USP48-215ENST00000534705 C2CD2LO14523 706 aa7.76□□□□□ -1.17
USP48-215ENST00000534705 ARAFP10398 606 aa7.76□□□□□ -1.17
USP48-215ENST00000534705 TMEM214Q6NUQ4 689 aaKnown RBP7.76□□□□□ -1.17
USP48-215ENST00000534705 XAGE2Q96GT9 111 aa7.76□□□□□ -1.17
USP48-215ENST00000534705 MYCP01106 439 aaPredicted RBP7.75□□□□□ -1.17
USP48-215ENST00000534705 IL2RAP01589 272 aa7.75□□□□□ -1.17
USP48-215ENST00000534705 MSX1P28360 303 aa7.75□□□□□ -1.17
USP48-215ENST00000534705 CHRNA4P43681 627 aa7.75□□□□□ -1.17
USP48-215ENST00000534705 DGKGP49619 791 aa7.75□□□□□ -1.17
USP48-215ENST00000534705 NR1H3Q13133 447 aa7.75□□□□□ -1.17
USP48-215ENST00000534705 ESCO1Q5FWF5 840 aa7.75□□□□□ -1.17
USP48-215ENST00000534705 ZMYM1Q5SVZ6 1142 aa7.75□□□□□ -1.17
USP48-215ENST00000534705 FIGNL1Q6PIW4 674 aa7.75□□□□□ -1.17
USP48-215ENST00000534705 ABHD17AQ96GS6 310 aa7.75□□□□□ -1.17
USP48-215ENST00000534705 RUBCNLQ9H714 662 aa7.75□□□□□ -1.17
USP48-215ENST00000534705 RAB6BQ9NRW1 208 aa7.75□□□□□ -1.17
USP48-215ENST00000534705 NDFIP2Q9NV92 336 aa7.75□□□□□ -1.17
USP48-215ENST00000534705 KRTAP9-6A0A140TA67 174 aa7.74□□□□□ -1.17
USP48-215ENST00000534705 CTBSQ01459 385 aa7.74□□□□□ -1.17
USP48-215ENST00000534705 RNF135Q8IUD6 432 aa7.74□□□□□ -1.17
USP48-215ENST00000534705 HRH3Q9Y5N1 445 aa7.74□□□□□ -1.17
USP48-215ENST00000534705 BNIP3LO60238 219 aa7.73□□□□□ -1.17
USP48-215ENST00000534705 GATA4P43694 442 aa7.73□□□□□ -1.17
USP48-215ENST00000534705 DOC2BQ14184 412 aa7.73□□□□□ -1.17
USP48-215ENST00000534705 C4orf17Q53FE4 359 aa7.73□□□□□ -1.17
USP48-215ENST00000534705 CRISPLD1Q9H336 500 aa7.73□□□□□ -1.17
USP48-215ENST00000534705 FHDC1Q9C0D6 1143 aaPredicted RBP7.72□□□□□ -1.17
USP48-215ENST00000534705 NEURL1BA8MQ27 555 aa7.71□□□□□ -1.18
USP48-215ENST00000534705 ITGB7P26010 798 aa7.71□□□□□ -1.18
USP48-215ENST00000534705 CHSY3Q70JA7 882 aa7.71□□□□□ -1.18
USP48-215ENST00000534705 RHBDD1Q8TEB9 315 aa7.71□□□□□ -1.18
USP48-215ENST00000534705 GJD4Q96KN9 370 aaPredicted RBP7.71□□□□□ -1.18
USP48-215ENST00000534705 PCDHGC4Q9Y5F7 938 aa7.71□□□□□ -1.18
USP48-215ENST00000534705 ADH6P28332 368 aa7.7□□□□□ -1.18
USP48-215ENST00000534705 AVENQ9NQS1 362 aaPredicted RBP7.7□□□□□ -1.18
USP48-215ENST00000534705 NLRP8Q86W28 1048 aa7.69□□□□□ -1.18
USP48-215ENST00000534705 PPARGC1BQ86YN6 1023 aaKnown RBP7.69□□□□□ -1.18
USP48-215ENST00000534705 C1orf216Q8TAB5 229 aa7.69□□□□□ -1.18
USP48-215ENST00000534705 SOCS7O14512 581 aa7.68□□□□□ -1.18
USP48-215ENST00000534705 SPATA31C1P0DKV0 1188 aa7.68□□□□□ -1.18
USP48-215ENST00000534705 TMEM132AQ24JP5 1023 aa7.68□□□□□ -1.18
USP48-215ENST00000534705 FAM182BQ5T319 152 aa7.68□□□□□ -1.18
USP48-215ENST00000534705 TBC1D9Q6ZT07 1266 aa7.68□□□□□ -1.18
USP48-215ENST00000534705 ZCCHC2Q9C0B9 1178 aaKnown RBP7.68□□□□□ -1.18
USP48-215ENST00000534705 SPDYE3A6NKU9 549 aa7.67□□□□□ -1.18
USP48-215ENST00000534705 SCO2A0A1W2PP80 73 aa7.66□□□□□ -1.18
USP48-215ENST00000534705 ATXN7O15265 892 aaPredicted RBP7.66□□□□□ -1.18
USP48-215ENST00000534705 USP4Q13107 963 aa7.66□□□□□ -1.18
USP48-215ENST00000534705 PLVAPQ9BX97 442 aa7.66□□□□□ -1.18
USP48-215ENST00000534705 KRTAP1-3Q8IUG1 177 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms