RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	POU4F2	Q12837	409 aa		5.66	□□□□□ -1.5
CD44-238	ENST00000534296	NFX1	Q12986	1120 aa	Known RBP	5.66	□□□□□ -1.5
CD44-238	ENST00000534296	NBPF10	Q6P3W6	841 aa	Known RBP	5.66	□□□□□ -1.5
CD44-238	ENST00000534296	LARP1	Q6PKG0	1096 aa	Known RBP	5.66	□□□□□ -1.5
CD44-238	ENST00000534296	RHBDD1	Q8TEB9	315 aa		5.66	□□□□□ -1.5
CD44-238	ENST00000534296	CCDC97	Q96F63	343 aa	Predicted RBP	5.66	□□□□□ -1.5
CD44-238	ENST00000534296	GMCL1	Q96IK5	515 aa		5.66	□□□□□ -1.5
CD44-238	ENST00000534296	TIMMDC1	Q9NPL8	285 aa		5.66	□□□□□ -1.5
CD44-238	ENST00000534296	MKRN1	Q9UHC7	482 aa	Known RBP	5.66	□□□□□ -1.5
CD44-238	ENST00000534296	CHMP3	Q9Y3E7	222 aa		5.66	□□□□□ -1.5
CD44-238	ENST00000534296	DYRK1B	Q9Y463	629 aa		5.66	□□□□□ -1.5
CD44-238	ENST00000534296	MAFB	Q9Y5Q3	323 aa	Predicted RBP	5.66	□□□□□ -1.5
CD44-238	ENST00000534296		A0A1B0GTH6	734 aa		5.65	□□□□□ -1.5
CD44-238	ENST00000534296	CDC14C	A4D256	554 aa		5.65	□□□□□ -1.5
CD44-238	ENST00000534296	CSB-PGBD3	P0DP91	1061 aa		5.65	□□□□□ -1.5
CD44-238	ENST00000534296	RASA1	P20936	1047 aa		5.65	□□□□□ -1.5
CD44-238	ENST00000534296	SCNN1D	P51172	638 aa		5.65	□□□□□ -1.5
CD44-238	ENST00000534296	SMTN	P53814	917 aa		5.65	□□□□□ -1.5
CD44-238	ENST00000534296	RIPOR1	Q6ZS17	1223 aa		5.65	□□□□□ -1.5
CD44-238	ENST00000534296	PGBD3	Q8N328	593 aa		5.65	□□□□□ -1.5
CD44-238	ENST00000534296	LARGE2	Q8N3Y3	721 aa		5.65	□□□□□ -1.5
CD44-238	ENST00000534296	TPCN2	Q8NHX9	752 aa		5.65	□□□□□ -1.5
CD44-238	ENST00000534296	NIFK	Q9BYG3	293 aa	Known RBP	5.65	□□□□□ -1.5
CD44-238	ENST00000534296	SERTAD1	Q9UHV2	236 aa		5.65	□□□□□ -1.5
CD44-238	ENST00000534296	PCDHGA11	Q9Y5H2	935 aa		5.65	□□□□□ -1.5
CD44-238	ENST00000534296	VSIG8	P0DPA2	414 aa		5.64	□□□□□ -1.51
CD44-238	ENST00000534296	LMOD1	P29536	600 aa	Predicted RBP	5.64	□□□□□ -1.51
CD44-238	ENST00000534296	NBPF1	Q3BBV0	1214 aa		5.64	□□□□□ -1.51
CD44-238	ENST00000534296	CCDC102B	Q68D86	513 aa		5.64	□□□□□ -1.51
CD44-238	ENST00000534296	SV2A	Q7L0J3	742 aa		5.64	□□□□□ -1.51
CD44-238	ENST00000534296	PPARGC1B	Q86YN6	1023 aa	Known RBP	5.64	□□□□□ -1.51
CD44-238	ENST00000534296	OGFOD1	Q8N543	542 aa		5.64	□□□□□ -1.51
CD44-238	ENST00000534296	GAS2L1	Q99501	681 aa	Predicted RBP	5.64	□□□□□ -1.51
CD44-238	ENST00000534296	FHDC1	Q9C0D6	1143 aa	Predicted RBP	5.64	□□□□□ -1.51
CD44-238	ENST00000534296	VRTN	Q9H8Y1	702 aa		5.64	□□□□□ -1.51
CD44-238	ENST00000534296		A6NJY4	79 aa		5.63	□□□□□ -1.51
CD44-238	ENST00000534296	F11	P03951	625 aa		5.63	□□□□□ -1.51
CD44-238	ENST00000534296	INSM1	Q01101	510 aa	Predicted RBP	5.63	□□□□□ -1.51
CD44-238	ENST00000534296	ZNF594	Q96JF6	807 aa	Predicted RBP	5.63	□□□□□ -1.51
CD44-238	ENST00000534296	TRERF1	Q96PN7	1200 aa		5.63	□□□□□ -1.51
CD44-238	ENST00000534296	SLC4A9	Q96Q91	983 aa		5.63	□□□□□ -1.51
CD44-238	ENST00000534296	ZNF358	Q9NW07	568 aa		5.63	□□□□□ -1.51
CD44-238	ENST00000534296	SERPINA10	Q9UK55	444 aa		5.63	□□□□□ -1.51
CD44-238	ENST00000534296	HRH3	Q9Y5N1	445 aa		5.63	□□□□□ -1.51
CD44-238	ENST00000534296	SENP3-EIF4A1	A0A087X0R7	540 aa		5.62	□□□□□ -1.51
CD44-238	ENST00000534296	TMEM229A	B2RXF0	380 aa		5.62	□□□□□ -1.51
CD44-238	ENST00000534296	CDK2AP1	O14519	115 aa		5.62	□□□□□ -1.51
CD44-238	ENST00000534296	TAT	P17735	454 aa	Predicted RBP	5.62	□□□□□ -1.51
CD44-238	ENST00000534296	PHKA2	P46019	1235 aa		5.62	□□□□□ -1.51
CD44-238	ENST00000534296	PLA2G4A	P47712	749 aa		5.62	□□□□□ -1.51
CD44-238	ENST00000534296	EFHC2	Q5JST6	749 aa		5.62	□□□□□ -1.51
CD44-238	ENST00000534296	TRIM22	Q8IYM9	498 aa		5.62	□□□□□ -1.51
CD44-238	ENST00000534296	SIX5	Q8N196	739 aa		5.62	□□□□□ -1.51
CD44-238	ENST00000534296	C1orf216	Q8TAB5	229 aa		5.62	□□□□□ -1.51
CD44-238	ENST00000534296	NANOS1	Q8WY41	292 aa	Known RBP	5.62	□□□□□ -1.51
CD44-238	ENST00000534296	FAM196B	A6NMK8	535 aa		5.61	□□□□□ -1.51
CD44-238	ENST00000534296		M0R2N6	131 aa		5.61	□□□□□ -1.51
CD44-238	ENST00000534296	STAU1	O95793	577 aa	Known RBP	5.61	□□□□□ -1.51
CD44-238	ENST00000534296	RFX1	P22670	979 aa		5.61	□□□□□ -1.51
CD44-238	ENST00000534296	SEC13	P55735	322 aa		5.61	□□□□□ -1.51
CD44-238	ENST00000534296	CLDN10	P78369	228 aa		5.61	□□□□□ -1.51
CD44-238	ENST00000534296	LBR	Q14739	615 aa	Known RBP	5.61	□□□□□ -1.51
CD44-238	ENST00000534296	MTFR1	Q15390	333 aa		5.61	□□□□□ -1.51
CD44-238	ENST00000534296	C4orf17	Q53FE4	359 aa		5.61	□□□□□ -1.51
CD44-238	ENST00000534296	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	5.61	□□□□□ -1.51
CD44-238	ENST00000534296	CABP1	Q9NZU7	370 aa		5.61	□□□□□ -1.51
CD44-238	ENST00000534296	ERBB4	Q15303	1308 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	FAM181B	A6NEQ2	426 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	USP17L15	C9J2P7	530 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	USP17L10	C9JJH3	530 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	USP17L13	C9JLJ4	530 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	USP17L12	C9JPN9	530 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	USP17L11	C9JVI0	530 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	USP17L21	D6R901	530 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	USP17L18	D6R9N7	530 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	USP17L22	D6RA61	530 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	USP17L17	D6RBQ6	530 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	USP17L19	D6RCP7	530 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	USP17L20	D6RJB6	530 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	WIPF1	O43516	503 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	GMPR	P36959	345 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	USP17L24	Q0WX57	530 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	VWA5B2	Q8N398	1253 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	AIDA	Q96BJ3	306 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	NUCKS1	Q9H1E3	243 aa	Known RBP	5.6	□□□□□ -1.51
CD44-238	ENST00000534296	GPAM	Q9HCL2	828 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	SCHIP1	Q9P0W5	487 aa	Predicted RBP	5.6	□□□□□ -1.51
CD44-238	ENST00000534296	ZNF232	Q9UNY5	417 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	PHF24	Q9UPV7	400 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	GJA3	Q9Y6H8	435 aa		5.6	□□□□□ -1.51
CD44-238	ENST00000534296	FIGNL1	Q6PIW4	674 aa		5.59	□□□□□ -1.51
CD44-238	ENST00000534296	ZDHHC3	Q9NYG2	299 aa		5.59	□□□□□ -1.51
CD44-238	ENST00000534296	NSFL1C	Q9UNZ2	370 aa	Known RBP	5.59	□□□□□ -1.51
CD44-238	ENST00000534296	KIAA1024	Q9UPX6	916 aa		5.59	□□□□□ -1.51
CD44-238	ENST00000534296	SERTM1	A2A2V5	107 aa		5.58	□□□□□ -1.52
CD44-238	ENST00000534296	MSX1	P28360	303 aa		5.58	□□□□□ -1.52
CD44-238	ENST00000534296	PSMA6	P60900	246 aa	Known RBP	5.58	□□□□□ -1.52
CD44-238	ENST00000534296	ARSJ	Q5FYB0	599 aa	Predicted RBP	5.58	□□□□□ -1.52
CD44-238	ENST00000534296	CFAP70	Q5T0N1	1121 aa		5.58	□□□□□ -1.52
CD44-238	ENST00000534296	LCE2A	Q5TA79	106 aa	Predicted RBP	5.58	□□□□□ -1.52

Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms