RNA–Protein interactions for RNA: ENST00000533464.5

PHRF1-205, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-205ENST00000533464 CFAP45Q9UL16 551 aa20.76■□□□□ 0.91
PHRF1-205ENST00000533464 NAP1L1P55209 391 aaKnown RBP20.76■□□□□ 0.91
PHRF1-205ENST00000533464 KLHL34Q8N239 644 aa20.76■□□□□ 0.91
PHRF1-205ENST00000533464 LRP2BPQ9P2M1 347 aa20.75■□□□□ 0.91
PHRF1-205ENST00000533464 ITSN2Q9NZM3 1697 aa20.75■□□□□ 0.91
PHRF1-205ENST00000533464 RAI14Q9P0K7 980 aa20.75■□□□□ 0.91
PHRF1-205ENST00000533464 PI4KAP2A4QPH2 592 aa20.74■□□□□ 0.91
PHRF1-205ENST00000533464 BICDL1Q6ZP65 573 aa20.74■□□□□ 0.91
PHRF1-205ENST00000533464 PI4KAP1Q8N8J0 262 aa20.74■□□□□ 0.91
PHRF1-205ENST00000533464 IMMTQ16891 758 aaKnown RBP20.74■□□□□ 0.91
PHRF1-205ENST00000533464 CDKL5O76039 1030 aa20.74■□□□□ 0.91
PHRF1-205ENST00000533464 KRT28Q7Z3Y7 464 aa20.74■□□□□ 0.91
PHRF1-205ENST00000533464 ARHGAP45Q92619 1136 aa20.74■□□□□ 0.91
PHRF1-205ENST00000533464 TNRQ92752 1358 aa20.74■□□□□ 0.91
PHRF1-205ENST00000533464 IGHMBP2P38935 993 aaKnown RBP20.73■□□□□ 0.91
PHRF1-205ENST00000533464 UBAC1Q9BSL1 405 aa20.73■□□□□ 0.91
PHRF1-205ENST00000533464 NUP62CLQ9H1M0 184 aa20.73■□□□□ 0.91
PHRF1-205ENST00000533464 A0A087WZG4 1122 aa20.73■□□□□ 0.91
PHRF1-205ENST00000533464 BRPF1P55201 1214 aaPredicted RBP20.73■□□□□ 0.91
PHRF1-205ENST00000533464 AKAP2Q9Y2D5 859 aa20.73■□□□□ 0.91
PHRF1-205ENST00000533464 HDAC1Q13547 482 aaPredicted RBP20.73■□□□□ 0.91
PHRF1-205ENST00000533464 CARD14Q9BXL6 1004 aa20.73■□□□□ 0.91
PHRF1-205ENST00000533464 ARGLU1Q9NWB6 273 aaPredicted RBP20.73■□□□□ 0.91
PHRF1-205ENST00000533464 IFIT1P09914 478 aaKnown RBP20.73■□□□□ 0.91
PHRF1-205ENST00000533464 FILIP1LQ4L180 1135 aa20.73■□□□□ 0.91
PHRF1-205ENST00000533464 AIDAQ96BJ3 306 aa20.73■□□□□ 0.91
PHRF1-205ENST00000533464 U3KPZ7 1027 aaPredicted RBP20.73■□□□□ 0.91
PHRF1-205ENST00000533464 OFD1O75665 1012 aa20.72■□□□□ 0.91
PHRF1-205ENST00000533464 PDIA4P13667 645 aaKnown RBP20.72■□□□□ 0.91
PHRF1-205ENST00000533464 ABCF2Q9UG63 623 aa20.72■□□□□ 0.91
PHRF1-205ENST00000533464 WDR62O43379 1518 aa20.72■□□□□ 0.91
PHRF1-205ENST00000533464 ZNF771Q7L3S4 317 aaPredicted RBP20.72■□□□□ 0.91
PHRF1-205ENST00000533464 MAP3K2Q9Y2U5 619 aa20.72■□□□□ 0.91
PHRF1-205ENST00000533464 KIAA0556O60303 1618 aa20.72■□□□□ 0.91
PHRF1-205ENST00000533464 SYCE3A1L190 88 aa20.72■□□□□ 0.91
PHRF1-205ENST00000533464 ANXA1P04083 346 aa20.72■□□□□ 0.91
PHRF1-205ENST00000533464 ATP2B2Q01814 1243 aa20.72■□□□□ 0.91
PHRF1-205ENST00000533464 POLR3AO14802 1390 aaPredicted RBP20.72■□□□□ 0.91
PHRF1-205ENST00000533464 SERPINC1P01008 464 aa20.71■□□□□ 0.91
PHRF1-205ENST00000533464 TTLL5Q6EMB2 1281 aa20.71■□□□□ 0.91
PHRF1-205ENST00000533464 PPP1R42Q7Z4L9 355 aa20.71■□□□□ 0.91
PHRF1-205ENST00000533464 POLKQ9UBT6 870 aa20.71■□□□□ 0.91
PHRF1-205ENST00000533464 TSHZ3Q63HK5 1081 aa20.71■□□□□ 0.91
PHRF1-205ENST00000533464 TBC1D32Q96NH3 1257 aa20.71■□□□□ 0.91
PHRF1-205ENST00000533464 CTTNBP2Q8WZ74 1663 aa20.71■□□□□ 0.91
PHRF1-205ENST00000533464 PER1O15534 1290 aaPredicted RBP20.71■□□□□ 0.91
PHRF1-205ENST00000533464 SSFA2P28290 1259 aa20.71■□□□□ 0.91
PHRF1-205ENST00000533464 CDK5RAP3Q96JB5 506 aa20.71■□□□□ 0.91
PHRF1-205ENST00000533464 AEBP2Q6ZN18 517 aaPredicted RBP20.71■□□□□ 0.91
PHRF1-205ENST00000533464 ECHDC1Q9NTX5 307 aa20.71■□□□□ 0.91
PHRF1-205ENST00000533464 EPS15P42566 896 aa20.7■□□□□ 0.9
PHRF1-205ENST00000533464 MEIS3Q99687 375 aa20.7■□□□□ 0.9
PHRF1-205ENST00000533464 ZRANB1Q9UGI0 708 aa20.7■□□□□ 0.9
PHRF1-205ENST00000533464 PIP4K2BP78356 416 aa20.7■□□□□ 0.9
PHRF1-205ENST00000533464 ZNF518AQ6AHZ1 1483 aa20.7■□□□□ 0.9
PHRF1-205ENST00000533464 C8orf58Q8NAV2 365 aa20.7■□□□□ 0.9
PHRF1-205ENST00000533464 NUCB1Q02818 461 aa20.69■□□□□ 0.9
PHRF1-205ENST00000533464 TNPO1Q92973 898 aaKnown RBP20.69■□□□□ 0.9
PHRF1-205ENST00000533464 IFIT5Q13325 482 aaKnown RBP20.69■□□□□ 0.9
PHRF1-205ENST00000533464 TTC22Q5TAA0 569 aa20.68■□□□□ 0.9
PHRF1-205ENST00000533464 ZBTB3Q9H5J0 574 aa20.68■□□□□ 0.9
PHRF1-205ENST00000533464 ADAMTS12P58397 1594 aa20.68■□□□□ 0.9
PHRF1-205ENST00000533464 IFNL2Q8IZJ0 200 aa20.68■□□□□ 0.9
PHRF1-205ENST00000533464 ANKRD24Q8TF21 1146 aa20.68■□□□□ 0.9
PHRF1-205ENST00000533464 PIK3R4Q99570 1358 aa20.68■□□□□ 0.9
PHRF1-205ENST00000533464 ESPNB1AK53 854 aa20.68■□□□□ 0.9
PHRF1-205ENST00000533464 HMGN5P82970 282 aaKnown RBP20.68■□□□□ 0.9
PHRF1-205ENST00000533464 SH2B1Q9NRF2 756 aaPredicted RBP20.68■□□□□ 0.9
PHRF1-205ENST00000533464 WDR7Q9Y4E6 1490 aa20.68■□□□□ 0.9
PHRF1-205ENST00000533464 LIMCH1Q9UPQ0 1083 aa20.68■□□□□ 0.9
PHRF1-205ENST00000533464 PPIP5K1Q6PFW1 1433 aa20.67■□□□□ 0.9
PHRF1-205ENST00000533464 LARP6Q9BRS8 491 aaKnown RBP20.67■□□□□ 0.9
PHRF1-205ENST00000533464 PLEKHH1Q9ULM0 1364 aa20.67■□□□□ 0.9
PHRF1-205ENST00000533464 UHRF1BP1LA0JNW5 1464 aa20.67■□□□□ 0.9
PHRF1-205ENST00000533464 TEX35Q5T0J7 233 aa20.67■□□□□ 0.9
PHRF1-205ENST00000533464 TNNQ9UQP3 1299 aa20.67■□□□□ 0.9
PHRF1-205ENST00000533464 MAGEC2Q9UBF1 373 aaPredicted RBP20.67■□□□□ 0.9
PHRF1-205ENST00000533464 ATP5J2-PTCD1G3V325 749 aa20.66■□□□□ 0.9
PHRF1-205ENST00000533464 EIF4A2Q14240 407 aaKnown RBP20.66■□□□□ 0.9
PHRF1-205ENST00000533464 CEP57L1Q8IYX8 460 aa20.66■□□□□ 0.9
PHRF1-205ENST00000533464 PUS7Q96PZ0 661 aaKnown RBP20.66■□□□□ 0.9
PHRF1-205ENST00000533464 TTC21AQ8NDW8 1320 aa20.66■□□□□ 0.9
PHRF1-205ENST00000533464 PIP4K2AP48426 406 aaPredicted RBP20.66■□□□□ 0.9
PHRF1-205ENST00000533464 MAP3K11Q16584 847 aa20.66■□□□□ 0.9
PHRF1-205ENST00000533464 NOL7Q9UMY1 257 aaKnown RBP20.66■□□□□ 0.9
PHRF1-205ENST00000533464 CFAP43Q8NDM7 1665 aa20.65■□□□□ 0.9
PHRF1-205ENST00000533464 SMARCE1Q969G3 411 aa20.65■□□□□ 0.9
PHRF1-205ENST00000533464 EVI5LQ96CN4 794 aa20.65■□□□□ 0.9
PHRF1-205ENST00000533464 TRMT112Q9UI30 125 aaKnown RBP20.65■□□□□ 0.9
PHRF1-205ENST00000533464 UBE3BQ7Z3V4 1068 aa20.65■□□□□ 0.9
PHRF1-205ENST00000533464 MRPL50Q8N5N7 158 aaKnown RBP20.65■□□□□ 0.9
PHRF1-205ENST00000533464 CHRNA2Q15822 529 aa20.65■□□□□ 0.9
PHRF1-205ENST00000533464 CAMK4Q16566 473 aa20.65■□□□□ 0.9
PHRF1-205ENST00000533464 PZPP20742 1482 aa20.64■□□□□ 0.9
PHRF1-205ENST00000533464 RLBP1P12271 317 aa20.64■□□□□ 0.89
PHRF1-205ENST00000533464 RIMS2Q9UQ26 1411 aa20.64■□□□□ 0.89
PHRF1-205ENST00000533464 CCAR1Q8IX12 1150 aaKnown RBP20.64■□□□□ 0.89
PHRF1-205ENST00000533464 SOGA3Q5TF21 947 aa20.63■□□□□ 0.89
PHRF1-205ENST00000533464 DACH1Q9UI36 760 aa20.63■□□□□ 0.89
PHRF1-205ENST00000533464 SHANK2Q9UPX8 1470 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms