RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 FOXJ1Q92949 421 aa5.19□□□□□ -1.58
CD44-234ENST00000531873 CLP1Q92989 425 aaKnown RBP5.19□□□□□ -1.58
CD44-234ENST00000531873 ZFAND3Q9H8U3 227 aa5.19□□□□□ -1.58
CD44-234ENST00000531873 DNMT3LQ9UJW3 386 aa5.19□□□□□ -1.58
CD44-234ENST00000531873 DPYDQ12882 1025 aa5.18□□□□□ -1.58
CD44-234ENST00000531873 C6orf118Q5T5N4 469 aa5.18□□□□□ -1.58
CD44-234ENST00000531873 B4GALNT3Q6L9W6 998 aa5.18□□□□□ -1.58
CD44-234ENST00000531873 LARP1Q6PKG0 1096 aaKnown RBP5.18□□□□□ -1.58
CD44-234ENST00000531873 ANKMY2Q8IV38 441 aa5.18□□□□□ -1.58
CD44-234ENST00000531873 SVOPQ8N4V2 548 aa5.18□□□□□ -1.58
CD44-234ENST00000531873 MEIOBQ8N635 442 aa5.18□□□□□ -1.58
CD44-234ENST00000531873 ZNF428Q96B54 188 aa5.18□□□□□ -1.58
CD44-234ENST00000531873 ITPKCQ96DU7 683 aa5.18□□□□□ -1.58
CD44-234ENST00000531873 C1QTNF2Q9BXJ5 285 aa5.18□□□□□ -1.58
CD44-234ENST00000531873 COL25A1Q9BXS0 654 aaPredicted RBP5.18□□□□□ -1.58
CD44-234ENST00000531873 GIGYF1O75420 1035 aaPredicted RBP5.17□□□□□ -1.58
CD44-234ENST00000531873 NR5A1Q13285 461 aa5.17□□□□□ -1.58
CD44-234ENST00000531873 DZIP3Q86Y13 1208 aaKnown RBP5.17□□□□□ -1.58
CD44-234ENST00000531873 SIX5Q8N196 739 aa5.17□□□□□ -1.58
CD44-234ENST00000531873 LINC00528Q8N1L1 170 aa5.17□□□□□ -1.58
CD44-234ENST00000531873 FAM200AQ8TCP9 573 aa5.17□□□□□ -1.58
CD44-234ENST00000531873 WHAMMQ8TF30 809 aa5.17□□□□□ -1.58
CD44-234ENST00000531873 SCARF2Q96GP6 870 aaPredicted RBP5.17□□□□□ -1.58
CD44-234ENST00000531873 ZNF594Q96JF6 807 aaPredicted RBP5.17□□□□□ -1.58
CD44-234ENST00000531873 CDCA7Q9BWT1 371 aaPredicted RBP5.17□□□□□ -1.58
CD44-234ENST00000531873 DOLKQ9UPQ8 538 aa5.17□□□□□ -1.58
CD44-234ENST00000531873 ESPNB1AK53 854 aa5.16□□□□□ -1.58
CD44-234ENST00000531873 ZBTB7BO15156 539 aaPredicted RBP5.16□□□□□ -1.58
CD44-234ENST00000531873 UPP2O95045 317 aa5.16□□□□□ -1.58
CD44-234ENST00000531873 BMP2P12643 396 aa5.16□□□□□ -1.58
CD44-234ENST00000531873 SWI5Q1ZZU3 235 aa5.16□□□□□ -1.58
CD44-234ENST00000531873 CCDC27Q2M243 656 aa5.16□□□□□ -1.58
CD44-234ENST00000531873 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.16□□□□□ -1.58
CD44-234ENST00000531873 OXLD1Q5BKU9 147 aa5.16□□□□□ -1.58
CD44-234ENST00000531873 RNFT1Q5M7Z0 435 aa5.16□□□□□ -1.58
CD44-234ENST00000531873 BPHLQ86WA6 291 aaPredicted RBP5.16□□□□□ -1.58
CD44-234ENST00000531873 DNAAF2Q9NVR5 837 aaKnown RBP5.16□□□□□ -1.58
CD44-234ENST00000531873 NOD1Q9Y239 953 aa5.16□□□□□ -1.58
CD44-234ENST00000531873 NR3C2P08235 984 aa5.15□□□□□ -1.59
CD44-234ENST00000531873 ATP2B4P23634 1241 aa5.15□□□□□ -1.59
CD44-234ENST00000531873 SCNN1AP37088 669 aa5.15□□□□□ -1.59
CD44-234ENST00000531873 GRM5P41594 1212 aa5.15□□□□□ -1.59
CD44-234ENST00000531873 ATP1A2P50993 1020 aa5.15□□□□□ -1.59
CD44-234ENST00000531873 MARSP56192 900 aaKnown RBP5.15□□□□□ -1.59
CD44-234ENST00000531873 GTF2IP78347 998 aa5.15□□□□□ -1.59
CD44-234ENST00000531873 TRIM50Q86XT4 487 aa5.15□□□□□ -1.59
CD44-234ENST00000531873 TRMT44Q8IYL2 757 aaKnown RBP5.15□□□□□ -1.59
CD44-234ENST00000531873 LARGE2Q8N3Y3 721 aa5.15□□□□□ -1.59
CD44-234ENST00000531873 SLC10A4Q96EP9 437 aa5.15□□□□□ -1.59
CD44-234ENST00000531873 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.14□□□□□ -1.59
CD44-234ENST00000531873 SERPINB4P48594 390 aa5.14□□□□□ -1.59
CD44-234ENST00000531873 PTSQ03393 145 aa5.14□□□□□ -1.59
CD44-234ENST00000531873 OCLNQ16625 522 aa5.14□□□□□ -1.59
CD44-234ENST00000531873 CCER1Q8TC90 406 aaPredicted RBP5.14□□□□□ -1.59
CD44-234ENST00000531873 KRTAP9-2Q9BYQ4 174 aa5.14□□□□□ -1.59
CD44-234ENST00000531873 PCDHGA11Q9Y5H2 935 aa5.14□□□□□ -1.59
CD44-234ENST00000531873 MSTNO14793 375 aa5.13□□□□□ -1.59
CD44-234ENST00000531873 AGERQ15109 404 aa5.13□□□□□ -1.59
CD44-234ENST00000531873 NBPF20Q3BBV1 942 aa5.13□□□□□ -1.59
CD44-234ENST00000531873 C1orf216Q8TAB5 229 aa5.13□□□□□ -1.59
CD44-234ENST00000531873 TSEN34Q9BSV6 310 aaKnown RBP5.13□□□□□ -1.59
CD44-234ENST00000531873 PCDHB11Q9Y5F2 797 aa5.13□□□□□ -1.59
CD44-234ENST00000531873 SOWAHDA6NJG2 315 aa5.12□□□□□ -1.59
CD44-234ENST00000531873 SFI1A8K8P3 1242 aa5.12□□□□□ -1.59
CD44-234ENST00000531873 PRMT3O60678 531 aa5.12□□□□□ -1.59
CD44-234ENST00000531873 ARID4AP29374 1257 aaPredicted RBP5.12□□□□□ -1.59
CD44-234ENST00000531873 RBM25P49756 843 aaKnown RBP5.12□□□□□ -1.59
CD44-234ENST00000531873 SEC13P55735 322 aa5.12□□□□□ -1.59
CD44-234ENST00000531873 NOM1Q5C9Z4 860 aaKnown RBP5.12□□□□□ -1.59
CD44-234ENST00000531873 CCDC102BQ68D86 513 aa5.12□□□□□ -1.59
CD44-234ENST00000531873 SEPT12Q8IYM1 358 aa5.12□□□□□ -1.59
CD44-234ENST00000531873 CCDC155Q8N6L0 562 aa5.12□□□□□ -1.59
CD44-234ENST00000531873 TPCN2Q8NHX9 752 aa5.12□□□□□ -1.59
CD44-234ENST00000531873 SPOCK3Q9BQ16 436 aa5.12□□□□□ -1.59
CD44-234ENST00000531873 CXXC1Q9P0U4 656 aaPredicted RBP5.12□□□□□ -1.59
CD44-234ENST00000531873 SLC35F4A4IF30 521 aa5.11□□□□□ -1.59
CD44-234ENST00000531873 TTLL8A6PVC2 850 aa5.11□□□□□ -1.59
CD44-234ENST00000531873 ITGB2P05107 769 aa5.11□□□□□ -1.59
CD44-234ENST00000531873 SCTRP47872 440 aa5.11□□□□□ -1.59
CD44-234ENST00000531873 PLA2G4EQ3MJ16 856 aa5.11□□□□□ -1.59
CD44-234ENST00000531873 RNF20Q5VTR2 975 aa5.11□□□□□ -1.59
CD44-234ENST00000531873 DNAJC14Q6Y2X3 702 aaPredicted RBP5.11□□□□□ -1.59
CD44-234ENST00000531873 PSMG3-AS1Q96PY0 264 aa5.11□□□□□ -1.59
CD44-234ENST00000531873 CDV3Q9UKY7 258 aaKnown RBP5.11□□□□□ -1.59
CD44-234ENST00000531873 AMOTL2Q9Y2J4 779 aa5.11□□□□□ -1.59
CD44-234ENST00000531873 KRTAP9-6A0A140TA67 174 aa5.1□□□□□ -1.59
CD44-234ENST00000531873 LGR5O75473 907 aa5.1□□□□□ -1.59
CD44-234ENST00000531873 PROCP04070 461 aa5.1□□□□□ -1.59
CD44-234ENST00000531873 ARID5BQ14865 1188 aa5.1□□□□□ -1.59
CD44-234ENST00000531873 INTS6LQ5JSJ4 861 aaKnown RBP5.1□□□□□ -1.59
CD44-234ENST00000531873 SV2AQ7L0J3 742 aa5.1□□□□□ -1.59
CD44-234ENST00000531873 TAS1R3Q7RTX0 852 aa5.1□□□□□ -1.59
CD44-234ENST00000531873 PRIMPOLQ96LW4 560 aa5.1□□□□□ -1.59
CD44-234ENST00000531873 KCTD15Q96SI1 283 aaPredicted RBP5.1□□□□□ -1.59
CD44-234ENST00000531873 MAP4K5Q9Y4K4 846 aa5.1□□□□□ -1.59
CD44-234ENST00000531873 ERVH48-1M5A8F1 160 aa5.09□□□□□ -1.59
CD44-234ENST00000531873 ITGA6P23229 1130 aa5.09□□□□□ -1.59
CD44-234ENST00000531873 USP4Q13107 963 aa5.09□□□□□ -1.59
CD44-234ENST00000531873 LYPD4Q6UWN0 246 aa5.09□□□□□ -1.59
CD44-234ENST00000531873 VWA5B2Q8N398 1253 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 214.2 ms