RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SALL3Q9BXA9 1300 aa23.65■■□□□ 1.38
VPS28-213ENST00000530983 STK31Q9BXU1 1019 aa23.64■■□□□ 1.38
VPS28-213ENST00000530983 CWC22Q9HCG8 908 aaKnown RBP23.64■■□□□ 1.37
VPS28-213ENST00000530983 ZGPATQ8N5A5 531 aaKnown RBP23.63■■□□□ 1.37
VPS28-213ENST00000530983 NGDNQ8NEJ9 315 aaKnown RBP23.63■■□□□ 1.37
VPS28-213ENST00000530983 CACNA1FO60840 1977 aa23.63■■□□□ 1.37
VPS28-213ENST00000530983 FLIIQ13045 1269 aa23.62■■□□□ 1.37
VPS28-213ENST00000530983 MCTP1Q6DN14 999 aa23.62■■□□□ 1.37
VPS28-213ENST00000530983 N4BP2Q86UW6 1770 aaPredicted RBP23.62■■□□□ 1.37
VPS28-213ENST00000530983 MARF1Q9Y4F3 1742 aaKnown RBP23.61■■□□□ 1.37
VPS28-213ENST00000530983 ERBB4Q15303 1308 aa23.61■■□□□ 1.37
VPS28-213ENST00000530983 HTATSF1O43719 755 aaKnown RBP23.61■■□□□ 1.37
VPS28-213ENST00000530983 TSHZ3Q63HK5 1081 aa23.61■■□□□ 1.37
VPS28-213ENST00000530983 SLIT1O75093 1534 aa23.61■■□□□ 1.37
VPS28-213ENST00000530983 NWD1Q149M9 1564 aa23.6■■□□□ 1.37
VPS28-213ENST00000530983 FKBP5Q13451 457 aaPredicted RBP23.6■■□□□ 1.37
VPS28-213ENST00000530983 PNMA6EA0A0J9YXQ4 647 aa23.6■■□□□ 1.37
VPS28-213ENST00000530983 CEBPAP49715 358 aaPredicted RBP23.6■■□□□ 1.37
VPS28-213ENST00000530983 CCDC30Q5VVM6 783 aa23.6■■□□□ 1.37
VPS28-213ENST00000530983 LRRCC1Q9C099 1032 aa23.6■■□□□ 1.37
VPS28-213ENST00000530983 LMBRD1Q9NUN5 540 aa23.6■■□□□ 1.37
VPS28-213ENST00000530983 ESPNB1AK53 854 aa23.59■■□□□ 1.37
VPS28-213ENST00000530983 ARHGAP23Q9P227 1491 aa23.59■■□□□ 1.37
VPS28-213ENST00000530983 GNAT3A8MTJ3 354 aa23.59■■□□□ 1.37
VPS28-213ENST00000530983 GNAI3P08754 354 aa23.59■■□□□ 1.37
VPS28-213ENST00000530983 ZDHHC9Q9Y397 364 aa23.59■■□□□ 1.37
VPS28-213ENST00000530983 TBX22Q9Y458 520 aa23.58■■□□□ 1.37
VPS28-213ENST00000530983 MX1P20591 662 aa23.58■■□□□ 1.36
VPS28-213ENST00000530983 ATP8B2P98198 1209 aa23.58■■□□□ 1.36
VPS28-213ENST00000530983 NECTIN2Q92692 538 aa23.58■■□□□ 1.36
VPS28-213ENST00000530983 ESYT1Q9BSJ8 1104 aa23.57■■□□□ 1.36
VPS28-213ENST00000530983 NLRP6P59044 892 aa23.56■■□□□ 1.36
VPS28-213ENST00000530983 HOXC9P31274 260 aa23.56■■□□□ 1.36
VPS28-213ENST00000530983 TRIM44Q96DX7 344 aaPredicted RBP23.56■■□□□ 1.36
VPS28-213ENST00000530983 NASPP49321 788 aaPredicted RBP23.55■■□□□ 1.36
VPS28-213ENST00000530983 IL17REQ8NFR9 667 aa23.55■■□□□ 1.36
VPS28-213ENST00000530983 MAP3K5Q99683 1374 aa23.55■■□□□ 1.36
VPS28-213ENST00000530983 ZNF445P59923 1031 aa23.55■■□□□ 1.36
VPS28-213ENST00000530983 NEK4P51957 841 aa23.54■■□□□ 1.36
VPS28-213ENST00000530983 PXDNLA1KZ92 1463 aa23.54■■□□□ 1.36
VPS28-213ENST00000530983 USP54Q70EL1 1684 aa23.54■■□□□ 1.36
VPS28-213ENST00000530983 CAVIN1Q6NZI2 390 aaKnown RBP23.54■■□□□ 1.36
VPS28-213ENST00000530983 LRRFIP2Q9Y608 721 aaKnown RBP23.54■■□□□ 1.36
VPS28-213ENST00000530983 GLIPR1L2Q4G1C9 344 aa23.53■■□□□ 1.36
VPS28-213ENST00000530983 SOS1Q07889 1333 aaPredicted RBP23.53■■□□□ 1.36
VPS28-213ENST00000530983 PPP1R9BQ96SB3 815 aa23.53■■□□□ 1.36
VPS28-213ENST00000530983 STAP2Q9UGK3 403 aa23.53■■□□□ 1.36
VPS28-213ENST00000530983 CHMLP26374 656 aa23.52■■□□□ 1.36
VPS28-213ENST00000530983 CCDC173Q0VFZ6 552 aa23.52■■□□□ 1.36
VPS28-213ENST00000530983 ZSCAN23Q3MJ62 389 aa23.52■■□□□ 1.36
VPS28-213ENST00000530983 NUTM2GQ5VZR2 741 aa23.52■■□□□ 1.36
VPS28-213ENST00000530983 TMX3Q96JJ7 454 aa23.52■■□□□ 1.36
VPS28-213ENST00000530983 HSP90AA2PQ14568 343 aaPredicted RBP23.51■■□□□ 1.35
VPS28-213ENST00000530983 USP44Q9H0E7 712 aa23.51■■□□□ 1.35
VPS28-213ENST00000530983 PALD1Q9ULE6 856 aa23.51■■□□□ 1.35
VPS28-213ENST00000530983 NCLP19338 710 aaKnown RBP23.51■■□□□ 1.35
VPS28-213ENST00000530983 THEMISQ8N1K5 641 aaPredicted RBP23.51■■□□□ 1.35
VPS28-213ENST00000530983 ANKARQ7Z5J8 1434 aa23.51■■□□□ 1.35
VPS28-213ENST00000530983 PRPF40AO75400 957 aaKnown RBP23.5■■□□□ 1.35
VPS28-213ENST00000530983 TAF7Q15545 349 aaPredicted RBP23.5■■□□□ 1.35
VPS28-213ENST00000530983 GPT2Q8TD30 523 aa23.5■■□□□ 1.35
VPS28-213ENST00000530983 RILPL2Q969X0 211 aa23.5■■□□□ 1.35
VPS28-213ENST00000530983 BABAM1Q9NWV8 329 aa23.5■■□□□ 1.35
VPS28-213ENST00000530983 TRIM6-TRIM34B2RNG4 842 aa23.49■■□□□ 1.35
VPS28-213ENST00000530983 RRP9O43818 475 aaKnown RBP23.49■■□□□ 1.35
VPS28-213ENST00000530983 UNC5CLQ8IV45 518 aa23.49■■□□□ 1.35
VPS28-213ENST00000530983 CHAMP1Q96JM3 812 aa23.49■■□□□ 1.35
VPS28-213ENST00000530983 SRCIN1Q9C0H9 1055 aa23.49■■□□□ 1.35
VPS28-213ENST00000530983 FER1L4A9Z1Z3 1794 aa23.49■■□□□ 1.35
VPS28-213ENST00000530983 MCM2P49736 904 aa23.48■■□□□ 1.35
VPS28-213ENST00000530983 ANO2Q9NQ90 1003 aa23.48■■□□□ 1.35
VPS28-213ENST00000530983 ANAPC15P60006 121 aa23.48■■□□□ 1.35
VPS28-213ENST00000530983 LTV1Q96GA3 475 aaPredicted RBP23.48■■□□□ 1.35
VPS28-213ENST00000530983 UBTFL1P0CB47 393 aaPredicted RBP23.47■■□□□ 1.35
VPS28-213ENST00000530983 MCCP23508 829 aa23.47■■□□□ 1.35
VPS28-213ENST00000530983 CUL4AQ13619 759 aa23.47■■□□□ 1.35
VPS28-213ENST00000530983 PHAXQ9H814 394 aaKnown RBP23.47■■□□□ 1.35
VPS28-213ENST00000530983 AOX1Q06278 1338 aa23.46■■□□□ 1.35
VPS28-213ENST00000530983 HDGFL1Q5TGJ6 251 aa23.46■■□□□ 1.35
VPS28-213ENST00000530983 SSH3Q8TE77 659 aa23.46■■□□□ 1.35
VPS28-213ENST00000530983 IL17RAQ96F46 866 aa23.46■■□□□ 1.35
VPS28-213ENST00000530983 LTN1O94822 1766 aa23.45■■□□□ 1.35
VPS28-213ENST00000530983 ABTB2Q8N961 1025 aa23.45■■□□□ 1.34
VPS28-213ENST00000530983 PKNOX2Q96KN3 472 aa23.45■■□□□ 1.34
VPS28-213ENST00000530983 USHBP1Q8N6Y0 703 aa23.44■■□□□ 1.34
VPS28-213ENST00000530983 IL25Q9H293 177 aa23.44■■□□□ 1.34
VPS28-213ENST00000530983 IL1RAPL2Q9NP60 686 aa23.44■■□□□ 1.34
VPS28-213ENST00000530983 RBM27Q9P2N5 1060 aaKnown RBP23.44■■□□□ 1.34
VPS28-213ENST00000530983 ANP32BQ92688 251 aaKnown RBP23.44■■□□□ 1.34
VPS28-213ENST00000530983 BRD1O95696 1058 aa23.43■■□□□ 1.34
VPS28-213ENST00000530983 KCNA6P17658 529 aa23.43■■□□□ 1.34
VPS28-213ENST00000530983 FOXD4L5Q5VV16 416 aaPredicted RBP23.43■■□□□ 1.34
VPS28-213ENST00000530983 PLPPR3Q6T4P5 718 aa23.43■■□□□ 1.34
VPS28-213ENST00000530983 VSIG10Q8N0Z9 540 aa23.43■■□□□ 1.34
VPS28-213ENST00000530983 FOXD4L4Q8WXT5 416 aaPredicted RBP23.43■■□□□ 1.34
VPS28-213ENST00000530983 RBSNQ9H1K0 784 aa23.43■■□□□ 1.34
VPS28-213ENST00000530983 CEMIPQ8WUJ3 1361 aa23.43■■□□□ 1.34
VPS28-213ENST00000530983 PRIM1P49642 420 aaKnown RBP23.42■■□□□ 1.34
VPS28-213ENST00000530983 INTS4Q96HW7 963 aaKnown RBP23.42■■□□□ 1.34
VPS28-213ENST00000530983 MED1Q15648 1581 aaPredicted RBP23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms