RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 PDGFDQ9GZP0 370 aaPredicted RBP11.99□□□□□ -0.49
USP48-212ENST00000527823 NHSQ6T4R5 1651 aa11.99□□□□□ -0.49
USP48-212ENST00000527823 RGPD5Q99666 1765 aa11.99□□□□□ -0.49
USP48-212ENST00000527823 QRICH2Q9H0J4 1663 aa11.98□□□□□ -0.49
USP48-212ENST00000527823 CRB1P82279 1406 aa11.98□□□□□ -0.49
USP48-212ENST00000527823 TPRNQ4KMQ1 711 aa11.98□□□□□ -0.49
USP48-212ENST00000527823 TCP11L2Q8N4U5 519 aa11.98□□□□□ -0.49
USP48-212ENST00000527823 PRKCSHP14314 528 aaPredicted RBP11.97□□□□□ -0.49
USP48-212ENST00000527823 OSBPP22059 807 aa11.97□□□□□ -0.49
USP48-212ENST00000527823 FAM163AQ96GL9 167 aaPredicted RBP11.97□□□□□ -0.49
USP48-212ENST00000527823 LHX6Q9UPM6 363 aa11.97□□□□□ -0.49
USP48-212ENST00000527823 KIAA1210Q9ULL0 1709 aa11.97□□□□□ -0.49
USP48-212ENST00000527823 ST18O60284 1047 aa11.96□□□□□ -0.49
USP48-212ENST00000527823 COL24A1Q17RW2 1714 aa11.95□□□□□ -0.5
USP48-212ENST00000527823 SHANK3Q9BYB0 1731 aa11.95□□□□□ -0.5
USP48-212ENST00000527823 SENP3-EIF4A1A0A087X0R7 540 aa11.95□□□□□ -0.5
USP48-212ENST00000527823 PRIM1P49642 420 aaKnown RBP11.95□□□□□ -0.5
USP48-212ENST00000527823 PTF1AQ7RTS3 328 aa11.95□□□□□ -0.5
USP48-212ENST00000527823 THRAP3Q9Y2W1 955 aaKnown RBP11.95□□□□□ -0.5
USP48-212ENST00000527823 PCDHGA10Q9Y5H3 936 aa11.95□□□□□ -0.5
USP48-212ENST00000527823 TUBGCP6Q96RT7 1819 aa11.95□□□□□ -0.5
USP48-212ENST00000527823 QSER1Q2KHR3 1735 aa11.94□□□□□ -0.5
USP48-212ENST00000527823 TRPM1Q7Z4N2 1603 aa11.94□□□□□ -0.5
USP48-212ENST00000527823 PHF14O94880 888 aa11.94□□□□□ -0.5
USP48-212ENST00000527823 ZBTB7AO95365 584 aa11.94□□□□□ -0.5
USP48-212ENST00000527823 ZNF454Q8N9F8 522 aa11.94□□□□□ -0.5
USP48-212ENST00000527823 NUDT16Q96DE0 195 aaKnown RBP11.94□□□□□ -0.5
USP48-212ENST00000527823 BCL9O00512 1426 aa11.94□□□□□ -0.5
USP48-212ENST00000527823 BTAF1O14981 1849 aa11.93□□□□□ -0.5
USP48-212ENST00000527823 ACEP12821 1306 aa11.93□□□□□ -0.5
USP48-212ENST00000527823 EVA1CP58658 441 aa11.93□□□□□ -0.5
USP48-212ENST00000527823 PLSCR1O15162 318 aa11.92□□□□□ -0.5
USP48-212ENST00000527823 FOSBP53539 338 aa11.92□□□□□ -0.5
USP48-212ENST00000527823 AATKQ6ZMQ8 1374 aa11.92□□□□□ -0.5
USP48-212ENST00000527823 ABCC6O95255 1503 aa11.91□□□□□ -0.5
USP48-212ENST00000527823 MARVELD3Q96A59 401 aa11.91□□□□□ -0.5
USP48-212ENST00000527823 EPAS1Q99814 870 aa11.91□□□□□ -0.5
USP48-212ENST00000527823 FHDC1Q9C0D6 1143 aaPredicted RBP11.91□□□□□ -0.5
USP48-212ENST00000527823 TNS2Q63HR2 1409 aa11.91□□□□□ -0.5
USP48-212ENST00000527823 PPIP5K1Q6PFW1 1433 aa11.91□□□□□ -0.5
USP48-212ENST00000527823 C11orf95C9JLR9 678 aaPredicted RBP11.9□□□□□ -0.5
USP48-212ENST00000527823 C1QTNF8P60827 252 aa11.9□□□□□ -0.5
USP48-212ENST00000527823 CPSF1Q10570 1443 aaKnown RBP11.9□□□□□ -0.5
USP48-212ENST00000527823 TYW1BQ6NUM6 668 aa11.9□□□□□ -0.5
USP48-212ENST00000527823 MAP3K5Q99683 1374 aa11.9□□□□□ -0.5
USP48-212ENST00000527823 USP6P35125 1406 aa11.89□□□□□ -0.51
USP48-212ENST00000527823 ABTB2Q8N961 1025 aa11.89□□□□□ -0.51
USP48-212ENST00000527823 NFAT5O94916 1531 aa11.89□□□□□ -0.51
USP48-212ENST00000527823 PLEKHG3A1L390 1219 aa11.88□□□□□ -0.51
USP48-212ENST00000527823 GCP02774 474 aa11.88□□□□□ -0.51
USP48-212ENST00000527823 DDB1Q16531 1140 aa11.88□□□□□ -0.51
USP48-212ENST00000527823 GPIHBP1Q8IV16 184 aa11.88□□□□□ -0.51
USP48-212ENST00000527823 SYT17Q9BSW7 474 aa11.88□□□□□ -0.51
USP48-212ENST00000527823 CDK19Q9BWU1 502 aa11.88□□□□□ -0.51
USP48-212ENST00000527823 USP54Q70EL1 1684 aa11.87□□□□□ -0.51
USP48-212ENST00000527823 MAP3K7O43318 606 aa11.87□□□□□ -0.51
USP48-212ENST00000527823 IFFO2Q5TF58 517 aa11.87□□□□□ -0.51
USP48-212ENST00000527823 MARCH10Q8NA82 808 aaPredicted RBP11.87□□□□□ -0.51
USP48-212ENST00000527823 ZC3H15Q8WU90 426 aaKnown RBP11.87□□□□□ -0.51
USP48-212ENST00000527823 ZDHHC16Q969W1 377 aa11.87□□□□□ -0.51
USP48-212ENST00000527823 RAB3GAP2Q9H2M9 1393 aa11.87□□□□□ -0.51
USP48-212ENST00000527823 TXNRD1Q16881 649 aa11.86□□□□□ -0.51
USP48-212ENST00000527823 DCAF11Q8TEB1 546 aa11.86□□□□□ -0.51
USP48-212ENST00000527823 FBXW7Q969H0 707 aa11.86□□□□□ -0.51
USP48-212ENST00000527823 MTFR1LQ9H019 292 aa11.86□□□□□ -0.51
USP48-212ENST00000527823 LTN1O94822 1766 aa11.86□□□□□ -0.51
USP48-212ENST00000527823 MON2Q7Z3U7 1717 aa11.86□□□□□ -0.51
USP48-212ENST00000527823 ERBB3P21860 1342 aa11.86□□□□□ -0.51
USP48-212ENST00000527823 WDR17Q8IZU2 1322 aa11.86□□□□□ -0.51
USP48-212ENST00000527823 EMP3P54852 163 aa11.85□□□□□ -0.51
USP48-212ENST00000527823 SLC15A2Q16348 729 aa11.85□□□□□ -0.51
USP48-212ENST00000527823 TSR1Q2NL82 804 aaKnown RBP11.85□□□□□ -0.51
USP48-212ENST00000527823 PPP4R3BQ5MIZ7 849 aa11.85□□□□□ -0.51
USP48-212ENST00000527823 LCE2DQ5TA82 110 aaPredicted RBP11.85□□□□□ -0.51
USP48-212ENST00000527823 NLRP13Q86W25 1043 aa11.85□□□□□ -0.51
USP48-212ENST00000527823 ADAM33Q9BZ11 813 aa11.85□□□□□ -0.51
USP48-212ENST00000527823 STK32BQ9NY57 414 aa11.85□□□□□ -0.51
USP48-212ENST00000527823 BRD4O60885 1362 aaPredicted RBP11.84□□□□□ -0.51
USP48-212ENST00000527823 ZBTB7CA1YPR0 619 aa11.84□□□□□ -0.51
USP48-212ENST00000527823 TOM1L2Q6ZVM7 507 aa11.84□□□□□ -0.51
USP48-212ENST00000527823 DOT1LQ8TEK3 1739 aa11.83□□□□□ -0.52
USP48-212ENST00000527823 VARS2Q5ST30 1063 aaKnown RBP11.83□□□□□ -0.52
USP48-212ENST00000527823 CDHR5Q9HBB8 845 aa11.83□□□□□ -0.52
USP48-212ENST00000527823 LY75O60449 1722 aa11.83□□□□□ -0.52
USP48-212ENST00000527823 AXIN2Q9Y2T1 843 aa11.82□□□□□ -0.52
USP48-212ENST00000527823 FAM205CA6NFA0 338 aa11.81□□□□□ -0.52
USP48-212ENST00000527823 GIGYF1O75420 1035 aaPredicted RBP11.81□□□□□ -0.52
USP48-212ENST00000527823 ZNF827Q17R98 1081 aa11.81□□□□□ -0.52
USP48-212ENST00000527823 C6orf132Q5T0Z8 1188 aa11.81□□□□□ -0.52
USP48-212ENST00000527823 ARXQ96QS3 562 aa11.81□□□□□ -0.52
USP48-212ENST00000527823 GPR37O15354 613 aa11.8□□□□□ -0.52
USP48-212ENST00000527823 CDCA7Q9BWT1 371 aaPredicted RBP11.8□□□□□ -0.52
USP48-212ENST00000527823 CCDC7Q96M83 1385 aa11.79□□□□□ -0.52
USP48-212ENST00000527823 KAT6BQ8WYB5 2073 aa11.79□□□□□ -0.52
USP48-212ENST00000527823 FAM208AQ9UK61 1670 aaKnown RBP11.79□□□□□ -0.52
USP48-212ENST00000527823 SRPK2P78362 688 aaKnown RBP11.78□□□□□ -0.52
USP48-212ENST00000527823 STAC3Q96MF2 364 aa11.78□□□□□ -0.52
USP48-212ENST00000527823 CARD10Q9BWT7 1032 aa11.78□□□□□ -0.52
USP48-212ENST00000527823 ZMYND10O75800 440 aa11.77□□□□□ -0.53
USP48-212ENST00000527823 FCHSD2O94868 740 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms