RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 GAS6Q14393 721 aa7.72□□□□□ -1.17
CD44-219ENST00000525685 C4orf17Q53FE4 359 aa7.72□□□□□ -1.17
CD44-219ENST00000525685 CLUAP1Q96AJ1 413 aa7.72□□□□□ -1.17
CD44-219ENST00000525685 PCDHGA11Q9Y5H2 935 aa7.72□□□□□ -1.17
CD44-219ENST00000525685 LZTS3O60299 673 aaPredicted RBP7.71□□□□□ -1.18
CD44-219ENST00000525685 F11P03951 625 aa7.71□□□□□ -1.18
CD44-219ENST00000525685 SLURP2P0DP57 97 aa7.71□□□□□ -1.18
CD44-219ENST00000525685 PHKA2P46019 1235 aa7.71□□□□□ -1.18
CD44-219ENST00000525685 TLR1Q15399 786 aa7.71□□□□□ -1.18
CD44-219ENST00000525685 EML3Q32P44 896 aa7.71□□□□□ -1.18
CD44-219ENST00000525685 GNASQ5JWF2 1037 aa7.71□□□□□ -1.18
CD44-219ENST00000525685 TMEM214Q6NUQ4 689 aaKnown RBP7.71□□□□□ -1.18
CD44-219ENST00000525685 PPARGC1BQ86YN6 1023 aaKnown RBP7.71□□□□□ -1.18
CD44-219ENST00000525685 FNBP4Q8N3X1 1017 aaPredicted RBP7.71□□□□□ -1.18
CD44-219ENST00000525685 A0A1B0GTH6 734 aa7.7□□□□□ -1.18
CD44-219ENST00000525685 USP17L5A8MUK1 530 aa7.7□□□□□ -1.18
CD44-219ENST00000525685 TMEM229AB2RXF0 380 aa7.7□□□□□ -1.18
CD44-219ENST00000525685 GTF2E1P29083 439 aaPredicted RBP7.7□□□□□ -1.18
CD44-219ENST00000525685 NCOA4Q13772 614 aa7.7□□□□□ -1.18
CD44-219ENST00000525685 HDGFL1Q5TGJ6 251 aa7.7□□□□□ -1.18
CD44-219ENST00000525685 RHBDD1Q8TEB9 315 aa7.7□□□□□ -1.18
CD44-219ENST00000525685 UCN2Q96RP3 112 aa7.7□□□□□ -1.18
CD44-219ENST00000525685 NOD1Q9Y239 953 aa7.7□□□□□ -1.18
CD44-219ENST00000525685 GPR25O00155 361 aa7.69□□□□□ -1.18
CD44-219ENST00000525685 PROSER2Q86WR7 435 aaPredicted RBP7.69□□□□□ -1.18
CD44-219ENST00000525685 GTPBP3Q969Y2 492 aaKnown RBP7.69□□□□□ -1.18
CD44-219ENST00000525685 SLC4A9Q96Q91 983 aa7.69□□□□□ -1.18
CD44-219ENST00000525685 THBS1P07996 1170 aa7.68□□□□□ -1.18
CD44-219ENST00000525685 SMTNP53814 917 aa7.68□□□□□ -1.18
CD44-219ENST00000525685 GTF2IP78347 998 aa7.68□□□□□ -1.18
CD44-219ENST00000525685 DEPDC4Q8N2C3 294 aa7.68□□□□□ -1.18
CD44-219ENST00000525685 NUCKS1Q9H1E3 243 aaKnown RBP7.68□□□□□ -1.18
CD44-219ENST00000525685 GPAMQ9HCL2 828 aa7.68□□□□□ -1.18
CD44-219ENST00000525685 TIMELESSQ9UNS1 1208 aa7.68□□□□□ -1.18
CD44-219ENST00000525685 ADAMTS2O95450 1211 aa7.67□□□□□ -1.18
CD44-219ENST00000525685 SRSF11Q05519 484 aaKnown RBP7.67□□□□□ -1.18
CD44-219ENST00000525685 MTFR1Q15390 333 aa7.67□□□□□ -1.18
CD44-219ENST00000525685 ZNF385CQ66K41 422 aaPredicted RBP7.67□□□□□ -1.18
CD44-219ENST00000525685 FOXR1Q6PIV2 292 aa7.67□□□□□ -1.18
CD44-219ENST00000525685 TBC1D9Q6ZT07 1266 aa7.67□□□□□ -1.18
CD44-219ENST00000525685 PLEKHM2Q8IWE5 1019 aa7.67□□□□□ -1.18
CD44-219ENST00000525685 WHAMMQ8TF30 809 aa7.67□□□□□ -1.18
CD44-219ENST00000525685 SERTAD1Q9UHV2 236 aa7.67□□□□□ -1.18
CD44-219ENST00000525685 A6NJR5 290 aa7.66□□□□□ -1.18
CD44-219ENST00000525685 MSX1P28360 303 aa7.66□□□□□ -1.18
CD44-219ENST00000525685 ZNF295-AS1Q8N0V1 137 aa7.66□□□□□ -1.18
CD44-219ENST00000525685 MBIPQ9NS73 344 aa7.66□□□□□ -1.18
CD44-219ENST00000525685 IQSEC3Q9UPP2 1182 aaPredicted RBP7.66□□□□□ -1.18
CD44-219ENST00000525685 USP17L3A6NCW0 530 aa7.65□□□□□ -1.18
CD44-219ENST00000525685 USP17L4A6NCW7 530 aa7.65□□□□□ -1.18
CD44-219ENST00000525685 A6NJY4 79 aa7.65□□□□□ -1.18
CD44-219ENST00000525685 ATP9BO43861 1147 aa7.65□□□□□ -1.18
CD44-219ENST00000525685 PLA2G4AP47712 749 aa7.65□□□□□ -1.18
CD44-219ENST00000525685 USP17L2Q6R6M4 530 aa7.65□□□□□ -1.18
CD44-219ENST00000525685 USP17L1Q7RTZ2 530 aa7.65□□□□□ -1.18
CD44-219ENST00000525685 TRERF1Q96PN7 1200 aa7.65□□□□□ -1.18
CD44-219ENST00000525685 USP3Q9Y6I4 520 aa7.65□□□□□ -1.18
CD44-219ENST00000525685 CDK2AP1O14519 115 aa7.64□□□□□ -1.19
CD44-219ENST00000525685 UBAP2LQ14157 1087 aaKnown RBP7.64□□□□□ -1.19
CD44-219ENST00000525685 LBRQ14739 615 aaKnown RBP7.64□□□□□ -1.19
CD44-219ENST00000525685 SVOPQ8N4V2 548 aa7.64□□□□□ -1.19
CD44-219ENST00000525685 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.64□□□□□ -1.19
CD44-219ENST00000525685 GLMNQ92990 594 aa7.64□□□□□ -1.19
CD44-219ENST00000525685 NIFKQ9BYG3 293 aaKnown RBP7.64□□□□□ -1.19
CD44-219ENST00000525685 RUBCNLQ9H714 662 aa7.64□□□□□ -1.19
CD44-219ENST00000525685 BACH1O14867 736 aa7.63□□□□□ -1.19
CD44-219ENST00000525685 ARHGEF15O94989 841 aa7.63□□□□□ -1.19
CD44-219ENST00000525685 CSB-PGBD3P0DP91 1061 aa7.63□□□□□ -1.19
CD44-219ENST00000525685 PSME1Q06323 249 aa7.63□□□□□ -1.19
CD44-219ENST00000525685 TRIM50Q86XT4 487 aa7.63□□□□□ -1.19
CD44-219ENST00000525685 PGBD3Q8N328 593 aa7.63□□□□□ -1.19
CD44-219ENST00000525685 ZMYND15Q9H091 742 aa7.63□□□□□ -1.19
CD44-219ENST00000525685 CRISPLD1Q9H336 500 aa7.63□□□□□ -1.19
CD44-219ENST00000525685 ZNF358Q9NW07 568 aa7.63□□□□□ -1.19
CD44-219ENST00000525685 KIAA1024Q9UPX6 916 aa7.63□□□□□ -1.19
CD44-219ENST00000525685 IGF1RP08069 1367 aa7.62□□□□□ -1.19
CD44-219ENST00000525685 ZBTB7BO15156 539 aaPredicted RBP7.62□□□□□ -1.19
CD44-219ENST00000525685 ATP4AP20648 1035 aa7.62□□□□□ -1.19
CD44-219ENST00000525685 LYPD4Q6UWN0 246 aa7.62□□□□□ -1.19
CD44-219ENST00000525685 C1orf216Q8TAB5 229 aa7.62□□□□□ -1.19
CD44-219ENST00000525685 CFHR5Q9BXR6 569 aa7.62□□□□□ -1.19
CD44-219ENST00000525685 ADAMTS8Q9UP79 889 aa7.62□□□□□ -1.19
CD44-219ENST00000525685 MX2P20592 715 aa7.61□□□□□ -1.19
CD44-219ENST00000525685 EPHA4P54764 986 aa7.61□□□□□ -1.19
CD44-219ENST00000525685 CLDN10P78369 228 aa7.61□□□□□ -1.19
CD44-219ENST00000525685 EFHC2Q5JST6 749 aa7.61□□□□□ -1.19
CD44-219ENST00000525685 TPCN2Q8NHX9 752 aa7.61□□□□□ -1.19
CD44-219ENST00000525685 SCHIP1Q9P0W5 487 aaPredicted RBP7.61□□□□□ -1.19
CD44-219ENST00000525685 CELA2BP08218 269 aaPredicted RBP7.6□□□□□ -1.19
CD44-219ENST00000525685 ATP1A2P50993 1020 aa7.6□□□□□ -1.19
CD44-219ENST00000525685 FOXK2Q01167 660 aa7.6□□□□□ -1.19
CD44-219ENST00000525685 CCDC102BQ68D86 513 aa7.6□□□□□ -1.19
CD44-219ENST00000525685 TFIP11Q9UBB9 837 aaKnown RBP7.6□□□□□ -1.19
CD44-219ENST00000525685 MKRN1Q9UHC7 482 aaKnown RBP7.6□□□□□ -1.19
CD44-219ENST00000525685 OGFOD1Q8N543 542 aa7.59□□□□□ -1.19
CD44-219ENST00000525685 AIDAQ96BJ3 306 aa7.59□□□□□ -1.19
CD44-219ENST00000525685 NDFIP2Q9NV92 336 aa7.59□□□□□ -1.19
CD44-219ENST00000525685 DNAAF2Q9NVR5 837 aaKnown RBP7.59□□□□□ -1.19
CD44-219ENST00000525685 ZDHHC3Q9NYG2 299 aa7.59□□□□□ -1.19
CD44-219ENST00000525685 CABP1Q9NZU7 370 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms