RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 IL17REQ8NFR9 667 aa11.09□□□□□ -0.63
VAPB-206ENST00000520497 CFAP44Q96MT7 982 aa11.09□□□□□ -0.63
VAPB-206ENST00000520497 SPG7Q9UQ90 795 aa11.09□□□□□ -0.63
VAPB-206ENST00000520497 CCDC9Q9Y3X0 531 aaKnown RBP11.09□□□□□ -0.63
VAPB-206ENST00000520497 TNS2Q63HR2 1409 aa11.09□□□□□ -0.63
VAPB-206ENST00000520497 SBF2Q86WG5 1849 aa11.08□□□□□ -0.64
VAPB-206ENST00000520497 CHL1O00533 1208 aa11.08□□□□□ -0.64
VAPB-206ENST00000520497 CYP27B1O15528 508 aa11.08□□□□□ -0.64
VAPB-206ENST00000520497 CAPN15O75808 1086 aa11.08□□□□□ -0.64
VAPB-206ENST00000520497 PHKG2P15735 406 aa11.08□□□□□ -0.64
VAPB-206ENST00000520497 C1orf141Q5JVX7 400 aa11.08□□□□□ -0.64
VAPB-206ENST00000520497 TSR2Q969E8 191 aaKnown RBP11.08□□□□□ -0.64
VAPB-206ENST00000520497 THRAP3Q9Y2W1 955 aaKnown RBP11.08□□□□□ -0.64
VAPB-206ENST00000520497 RNF123Q5XPI4 1314 aa11.08□□□□□ -0.64
VAPB-206ENST00000520497 PCDH11XQ9BZA7 1347 aa11.08□□□□□ -0.64
VAPB-206ENST00000520497 PCDH11YQ9BZA8 1340 aa11.08□□□□□ -0.64
VAPB-206ENST00000520497 RNMTO43148 476 aaKnown RBP11.07□□□□□ -0.64
VAPB-206ENST00000520497 IFNL2Q8IZJ0 200 aa11.07□□□□□ -0.64
VAPB-206ENST00000520497 ZCRB1Q8TBF4 217 aaKnown RBP11.07□□□□□ -0.64
VAPB-206ENST00000520497 MBIPQ9NS73 344 aa11.07□□□□□ -0.64
VAPB-206ENST00000520497 LAMB4A4D0S4 1761 aa11.07□□□□□ -0.64
VAPB-206ENST00000520497 C5P01031 1676 aa11.07□□□□□ -0.64
VAPB-206ENST00000520497 EP400Q96L91 3159 aa11.06□□□□□ -0.64
VAPB-206ENST00000520497 CT47B1P0C2W7 299 aaPredicted RBP11.06□□□□□ -0.64
VAPB-206ENST00000520497 DSG3P32926 999 aa11.06□□□□□ -0.64
VAPB-206ENST00000520497 FAM98CQ17RN3 349 aaKnown RBP11.06□□□□□ -0.64
VAPB-206ENST00000520497 BARGINQ6ZT62 677 aa11.06□□□□□ -0.64
VAPB-206ENST00000520497 CDCA7Q9BWT1 371 aaPredicted RBP11.06□□□□□ -0.64
VAPB-206ENST00000520497 LGR6Q9HBX8 967 aa11.06□□□□□ -0.64
VAPB-206ENST00000520497 BABAM1Q9NWV8 329 aa11.06□□□□□ -0.64
VAPB-206ENST00000520497 USP35Q9P2H5 1018 aa11.06□□□□□ -0.64
VAPB-206ENST00000520497 RCAN3Q9UKA8 241 aa11.06□□□□□ -0.64
VAPB-206ENST00000520497 ONECUT3O60422 494 aaPredicted RBP11.05□□□□□ -0.64
VAPB-206ENST00000520497 MPRIPQ6WCQ1 1025 aa11.05□□□□□ -0.64
VAPB-206ENST00000520497 SUPT16HQ9Y5B9 1047 aaKnown RBP11.05□□□□□ -0.64
VAPB-206ENST00000520497 N4BP2Q86UW6 1770 aaPredicted RBP11.04□□□□□ -0.64
VAPB-206ENST00000520497 A0A0G2JS52 829 aa11.04□□□□□ -0.64
VAPB-206ENST00000520497 HSP90AB1P08238 724 aaKnown RBP11.04□□□□□ -0.64
VAPB-206ENST00000520497 MYT1Q01538 1121 aa11.04□□□□□ -0.64
VAPB-206ENST00000520497 EXOSC9Q06265 439 aaKnown RBP11.04□□□□□ -0.64
VAPB-206ENST00000520497 NKX1-1Q15270 411 aaPredicted RBP11.04□□□□□ -0.64
VAPB-206ENST00000520497 TAF7Q15545 349 aaPredicted RBP11.04□□□□□ -0.64
VAPB-206ENST00000520497 KRT27Q7Z3Y8 459 aa11.04□□□□□ -0.64
VAPB-206ENST00000520497 DCAF5Q96JK2 942 aa11.04□□□□□ -0.64
VAPB-206ENST00000520497 LAS1LQ9Y4W2 734 aaKnown RBP11.04□□□□□ -0.64
VAPB-206ENST00000520497 TEFQ10587 303 aa11.02□□□□□ -0.65
VAPB-206ENST00000520497 PELP1Q8IZL8 1130 aaKnown RBP11.02□□□□□ -0.65
VAPB-206ENST00000520497 SLC52A2Q9HAB3 445 aa11.02□□□□□ -0.65
VAPB-206ENST00000520497 TSPYL4Q9UJ04 414 aa11.02□□□□□ -0.65
VAPB-206ENST00000520497 RARSP54136 660 aaKnown RBP11.01□□□□□ -0.65
VAPB-206ENST00000520497 ERICH6BQ5W0A0 696 aa11.01□□□□□ -0.65
VAPB-206ENST00000520497 TSPYL6Q8N831 410 aa11.01□□□□□ -0.65
VAPB-206ENST00000520497 ZNF428Q96B54 188 aa11.01□□□□□ -0.65
VAPB-206ENST00000520497 MIS18AQ9NYP9 233 aa11.01□□□□□ -0.65
VAPB-206ENST00000520497 CICQ96RK0 1608 aaPredicted RBP11.01□□□□□ -0.65
VAPB-206ENST00000520497 NHSQ6T4R5 1651 aa11.01□□□□□ -0.65
VAPB-206ENST00000520497 HEG1Q9ULI3 1381 aa11.01□□□□□ -0.65
VAPB-206ENST00000520497 BTAF1O14981 1849 aa11□□□□□ -0.65
VAPB-206ENST00000520497 ERVV-2B6SEH9 535 aa11□□□□□ -0.65
VAPB-206ENST00000520497 EXOC5O00471 708 aa11□□□□□ -0.65
VAPB-206ENST00000520497 VAMP4O75379 141 aa11□□□□□ -0.65
VAPB-206ENST00000520497 RRP1P56182 461 aaKnown RBP11□□□□□ -0.65
VAPB-206ENST00000520497 CCDC125Q86Z20 511 aa11□□□□□ -0.65
VAPB-206ENST00000520497 C8orf58Q8NAV2 365 aa11□□□□□ -0.65
VAPB-206ENST00000520497 KCPQ6ZWJ8 1503 aa10.99□□□□□ -0.65
VAPB-206ENST00000520497 ZNF831Q5JPB2 1677 aa10.99□□□□□ -0.65
VAPB-206ENST00000520497 PSDA5PKW4 1024 aaPredicted RBP10.99□□□□□ -0.65
VAPB-206ENST00000520497 BTBD11A6QL63 1104 aa10.99□□□□□ -0.65
VAPB-206ENST00000520497 FKBP8Q14318 412 aa10.99□□□□□ -0.65
VAPB-206ENST00000520497 DDB1Q16531 1140 aa10.99□□□□□ -0.65
VAPB-206ENST00000520497 KRT24Q2M2I5 525 aa10.99□□□□□ -0.65
VAPB-206ENST00000520497 TWISTNBQ3B726 338 aaPredicted RBP10.99□□□□□ -0.65
VAPB-206ENST00000520497 DDX54Q8TDD1 881 aaKnown RBP10.99□□□□□ -0.65
VAPB-206ENST00000520497 SOS1Q07889 1333 aaPredicted RBP10.99□□□□□ -0.65
VAPB-206ENST00000520497 TJP1Q07157 1748 aa10.98□□□□□ -0.65
VAPB-206ENST00000520497 BCAR3O75815 825 aa10.98□□□□□ -0.65
VAPB-206ENST00000520497 BRPF1P55201 1214 aaPredicted RBP10.98□□□□□ -0.65
VAPB-206ENST00000520497 EIF4A1P60842 406 aaKnown RBP10.98□□□□□ -0.65
VAPB-206ENST00000520497 EN1Q05925 392 aaPredicted RBP10.98□□□□□ -0.65
VAPB-206ENST00000520497 ALDH1L2Q3SY69 923 aa10.98□□□□□ -0.65
VAPB-206ENST00000520497 NFATC2IPQ8NCF5 419 aa10.98□□□□□ -0.65
VAPB-206ENST00000520497 KCNQ3O43525 872 aa10.97□□□□□ -0.65
VAPB-206ENST00000520497 HOXB7P09629 217 aa10.97□□□□□ -0.65
VAPB-206ENST00000520497 ZNF790Q6PG37 636 aa10.97□□□□□ -0.65
VAPB-206ENST00000520497 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.97□□□□□ -0.65
VAPB-206ENST00000520497 SSH1Q8WYL5 1049 aa10.97□□□□□ -0.65
VAPB-206ENST00000520497 BCL9O00512 1426 aa10.97□□□□□ -0.65
VAPB-206ENST00000520497 LY75O60449 1722 aa10.97□□□□□ -0.65
VAPB-206ENST00000520497 TAF1LQ8IZX4 1826 aa10.96□□□□□ -0.65
VAPB-206ENST00000520497 COL5A3P25940 1745 aaPredicted RBP10.96□□□□□ -0.65
VAPB-206ENST00000520497 ELL2O00472 640 aaPredicted RBP10.96□□□□□ -0.65
VAPB-206ENST00000520497 CABP4P57796 275 aa10.96□□□□□ -0.65
VAPB-206ENST00000520497 MARCH10Q8NA82 808 aaPredicted RBP10.96□□□□□ -0.65
VAPB-206ENST00000520497 SRCAPQ6ZRS2 3230 aa10.95□□□□□ -0.66
VAPB-206ENST00000520497 PLIN1O60240 522 aa10.95□□□□□ -0.66
VAPB-206ENST00000520497 SF3B2Q13435 895 aaKnown RBP10.95□□□□□ -0.66
VAPB-206ENST00000520497 SAMD1Q6SPF0 538 aaPredicted RBP10.95□□□□□ -0.66
VAPB-206ENST00000520497 BCL2L13Q9BXK5 485 aa10.95□□□□□ -0.66
VAPB-206ENST00000520497 SMC4Q9NTJ3 1288 aa10.95□□□□□ -0.66
VAPB-206ENST00000520497 TNS1Q9HBL0 1735 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms