RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 COL25A1Q9BXS0 654 aaPredicted RBP1.01□□□□□ -2.25
RNU4-54P-201ENST00000516428 NIFKQ9BYG3 293 aaKnown RBP1.01□□□□□ -2.25
RNU4-54P-201ENST00000516428 CNTNAP3Q9BZ76 1288 aa1.01□□□□□ -2.25
RNU4-54P-201ENST00000516428 NUCKS1Q9H1E3 243 aaKnown RBP1.01□□□□□ -2.25
RNU4-54P-201ENST00000516428 FAM13BQ9NYF5 915 aa1.01□□□□□ -2.25
RNU4-54P-201ENST00000516428 PCDHB9Q9Y5E1 797 aa1.01□□□□□ -2.25
RNU4-54P-201ENST00000516428 TLL2Q9Y6L7 1015 aa1.01□□□□□ -2.25
RNU4-54P-201ENST00000516428 NDUFB9Q9Y6M9 179 aa1.01□□□□□ -2.25
RNU4-54P-201ENST00000516428 SLC35F4A4IF30 521 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 C9orf172C9J069 976 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 C3orf80F5H4A9 247 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 WASLO00401 505 aaPredicted RBP1□□□□□ -2.25
RNU4-54P-201ENST00000516428 LILRB3O75022 631 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 F12P00748 615 aaPredicted RBP1□□□□□ -2.25
RNU4-54P-201ENST00000516428 ARAFP10398 606 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 YBX3P16989 372 aaKnown RBP eCLIP1□□□□□ -2.25
RNU4-54P-201ENST00000516428 UBTFP17480 764 aaKnown RBP1□□□□□ -2.25
RNU4-54P-201ENST00000516428 NDUFV2P19404 249 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 GATA4P43694 442 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 RAB15P59190 212 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 NR1H3Q13133 447 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 CLN3Q13286 438 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 GRIN2CQ14957 1233 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 ARSJQ5FYB0 599 aaPredicted RBP1□□□□□ -2.25
RNU4-54P-201ENST00000516428 MYSM1Q5VVJ2 828 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 PTCRAQ6ISU1 281 aaPredicted RBP1□□□□□ -2.25
RNU4-54P-201ENST00000516428 SH3BP5LQ7L8J4 393 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 PRICKLE2Q7Z3G6 844 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 TRIM46Q7Z4K8 759 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 SH3RF1Q7Z6J0 888 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 VWA5B2Q8N398 1253 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 ADAM32Q8TC27 787 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 RHBDD1Q8TEB9 315 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 SYMPKQ92797 1274 aaKnown RBP1□□□□□ -2.25
RNU4-54P-201ENST00000516428 FOXJ1Q92949 421 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 VTI1AQ96AJ9 217 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 AIDAQ96BJ3 306 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 C1QTNF2Q9BXJ5 285 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 OXCT2Q9BYC2 517 aaPredicted RBP1□□□□□ -2.25
RNU4-54P-201ENST00000516428 MUC3BQ9H195 1237 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 ZFAND3Q9H8U3 227 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 ZFYVE1Q9HBF4 777 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 SRA1Q9HD15 236 aaKnown RBP1□□□□□ -2.25
RNU4-54P-201ENST00000516428 POLR3EQ9NVU0 708 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 PODXL2Q9NZ53 605 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 DACH1Q9UI36 760 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 PCDHGC4Q9Y5F7 938 aa1□□□□□ -2.25
RNU4-54P-201ENST00000516428 IGF1RP08069 1367 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 SPATA31C2B4DYI2 1134 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 CFAP99D6REC4 459 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 ERVH48-1M5A8F1 160 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 ATXN7O15265 892 aaPredicted RBP0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 GPR37O15354 613 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 OIP5O43482 229 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 LILRB5O75023 590 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 RPLP1P05386 114 aaKnown RBP0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 CELA2BP08218 269 aaPredicted RBP0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 GRM5P41594 1212 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 GUCA2AQ02747 115 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 PSME1Q06323 249 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 EML3Q32P44 896 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 INTS6LQ5JSJ4 861 aaKnown RBP0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 HP1BP3Q5SSJ5 553 aaPredicted RBP0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 FAM182BQ5T319 152 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 FAM117BQ6P1L5 589 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 NBPF10Q6P3W6 841 aaKnown RBP0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 SLCO4C1Q6ZQN7 724 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 NPM2Q86SE8 214 aaKnown RBP0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 RNF135Q8IUD6 432 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 MAP4K3Q8IVH8 894 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 PARP9Q8IXQ6 854 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 MICALL1Q8N3F8 863 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 GAS2L2Q8NHY3 880 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 RNF217Q8TC41 542 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 DDX54Q8TDD1 881 aaKnown RBP0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 EDARADDQ8WWZ3 215 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 NLRP7Q8WX94 980 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 CNKSR1Q969H4 720 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 SPACA7Q96KW9 195 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 INSM2Q96T92 566 aaPredicted RBP0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 PHOX2BQ99453 314 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 ESYT1Q9BSJ8 1104 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 ZNF395Q9H8N7 513 aaPredicted RBP0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 C11orf16Q9NQ32 467 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 ZDHHC3Q9NYG2 299 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 MARK1Q9P0L2 795 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 DNMT3LQ9UJW3 386 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 PCDHGC3Q9UN70 934 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 DOLKQ9UPQ8 538 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 NOD1Q9Y239 953 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 PCDHB11Q9Y5F2 797 aa0.99□□□□□ -2.25
RNU4-54P-201ENST00000516428 ELOA3CA0A087WX78 387 aaPredicted RBP0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 A0A1W2PRU2 124 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 ELOA3DA6NLF2 546 aaPredicted RBP0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 SUPT5HO00267 1087 aaKnown RBP0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 COBLO75128 1261 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 USP17L8P0C7I0 530 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 PCSK2P16519 638 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 FGFR3P22607 806 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 RFC5P40937 340 aa0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms