RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 KDM3BQ7LBC6 1761 aa27.41■■□□□ 1.98
LSM6-207ENST00000515311 TAF7Q15545 349 aaPredicted RBP27.41■■□□□ 1.98
LSM6-207ENST00000515311 NFATC2IPQ8NCF5 419 aa27.41■■□□□ 1.98
LSM6-207ENST00000515311 BTAF1O14981 1849 aa27.4■■□□□ 1.98
LSM6-207ENST00000515311 ACSBG1Q96GR2 724 aa27.4■■□□□ 1.98
LSM6-207ENST00000515311 YTHDC1Q96MU7 727 aaKnown RBP27.4■■□□□ 1.98
LSM6-207ENST00000515311 IFT57Q9NWB7 429 aa27.4■■□□□ 1.98
LSM6-207ENST00000515311 BABAM1Q9NWV8 329 aa27.4■■□□□ 1.98
LSM6-207ENST00000515311 GOLGA2Q08379 1002 aa27.38■■□□□ 1.97
LSM6-207ENST00000515311 SYTL4Q96C24 671 aaPredicted RBP27.38■■□□□ 1.97
LSM6-207ENST00000515311 CFAP44Q96MT7 982 aa27.38■■□□□ 1.97
LSM6-207ENST00000515311 KCNQ2O43526 872 aa27.37■■□□□ 1.97
LSM6-207ENST00000515311 ZNF853P0CG23 659 aa27.37■■□□□ 1.97
LSM6-207ENST00000515311 GNAI1P63096 354 aa27.37■■□□□ 1.97
LSM6-207ENST00000515311 PIGBQ92521 554 aa27.37■■□□□ 1.97
LSM6-207ENST00000515311 BCL11BQ9C0K0 894 aaPredicted RBP27.37■■□□□ 1.97
LSM6-207ENST00000515311 UBR2Q8IWV8 1755 aa27.36■■□□□ 1.97
LSM6-207ENST00000515311 BTBD11A6QL63 1104 aa27.35■■□□□ 1.97
LSM6-207ENST00000515311 CHL1O00533 1208 aa27.35■■□□□ 1.97
LSM6-207ENST00000515311 TNS1Q9HBL0 1735 aaKnown RBP27.35■■□□□ 1.97
LSM6-207ENST00000515311 E9PSI1 815 aa27.33■■□□□ 1.97
LSM6-207ENST00000515311 MYH16Q9H6N6 1097 aa27.32■■□□□ 1.96
LSM6-207ENST00000515311 TSPYL4Q9UJ04 414 aa27.32■■□□□ 1.96
LSM6-207ENST00000515311 LAS1LQ9Y4W2 734 aaKnown RBP27.32■■□□□ 1.96
LSM6-207ENST00000515311 TRIM37O94972 964 aa27.31■■□□□ 1.96
LSM6-207ENST00000515311 SLFN5Q08AF3 891 aa27.3■■□□□ 1.96
LSM6-207ENST00000515311 ZNF790Q6PG37 636 aa27.3■■□□□ 1.96
LSM6-207ENST00000515311 PTF1AQ7RTS3 328 aa27.3■■□□□ 1.96
LSM6-207ENST00000515311 SPINK5Q9NQ38 1064 aaPredicted RBP27.3■■□□□ 1.96
LSM6-207ENST00000515311 MBIPQ9NS73 344 aa27.29■■□□□ 1.96
LSM6-207ENST00000515311 ATG3Q9NT62 314 aa27.29■■□□□ 1.96
LSM6-207ENST00000515311 MIS18AQ9NYP9 233 aa27.29■■□□□ 1.96
LSM6-207ENST00000515311 KCPQ6ZWJ8 1503 aa27.29■■□□□ 1.96
LSM6-207ENST00000515311 LY75O60449 1722 aa27.28■■□□□ 1.96
LSM6-207ENST00000515311 SMARCC1Q92922 1105 aaPredicted RBP27.28■■□□□ 1.96
LSM6-207ENST00000515311 ASAP1Q9ULH1 1129 aa27.28■■□□□ 1.96
LSM6-207ENST00000515311 RGPD3A6NKT7 1758 aaPredicted RBP27.27■■□□□ 1.96
LSM6-207ENST00000515311 RGPD4Q7Z3J3 1758 aa27.27■■□□□ 1.96
LSM6-207ENST00000515311 ZNF831Q5JPB2 1677 aa27.27■■□□□ 1.96
LSM6-207ENST00000515311 FANCIQ9NVI1 1328 aa27.27■■□□□ 1.96
LSM6-207ENST00000515311 SLC39A6Q13433 755 aa27.27■■□□□ 1.96
LSM6-207ENST00000515311 TRMT2AQ8IZ69 625 aaKnown RBP27.27■■□□□ 1.96
LSM6-207ENST00000515311 TTC5Q8N0Z6 440 aa27.27■■□□□ 1.96
LSM6-207ENST00000515311 CDCA7LQ96GN5 454 aa27.27■■□□□ 1.96
LSM6-207ENST00000515311 TSR2Q969E8 191 aaKnown RBP27.26■■□□□ 1.95
LSM6-207ENST00000515311 CICQ96RK0 1608 aaPredicted RBP27.25■■□□□ 1.95
LSM6-207ENST00000515311 PALLDQ8WX93 1383 aa27.24■■□□□ 1.95
LSM6-207ENST00000515311 KCNQ3O43525 872 aa27.23■■□□□ 1.95
LSM6-207ENST00000515311 HEG1Q9ULI3 1381 aa27.22■■□□□ 1.95
LSM6-207ENST00000515311 EIF4A1P60842 406 aaKnown RBP27.22■■□□□ 1.95
LSM6-207ENST00000515311 DUSP27Q5VZP5 1158 aa27.22■■□□□ 1.95
LSM6-207ENST00000515311 FMNL2Q96PY5 1086 aa27.22■■□□□ 1.95
LSM6-207ENST00000515311 CCDC125Q86Z20 511 aa27.21■■□□□ 1.95
LSM6-207ENST00000515311 ZNF496Q96IT1 587 aaPredicted RBP27.21■■□□□ 1.95
LSM6-207ENST00000515311 PLSCR1O15162 318 aa27.19■■□□□ 1.94
LSM6-207ENST00000515311 C5P01031 1676 aa27.19■■□□□ 1.94
LSM6-207ENST00000515311 LAMB4A4D0S4 1761 aa27.19■■□□□ 1.94
LSM6-207ENST00000515311 TJP1Q07157 1748 aa27.19■■□□□ 1.94
LSM6-207ENST00000515311 PTCD1O75127 700 aaKnown RBP27.18■■□□□ 1.94
LSM6-207ENST00000515311 APBA3O96018 575 aa27.18■■□□□ 1.94
LSM6-207ENST00000515311 ILDR2Q71H61 639 aa27.18■■□□□ 1.94
LSM6-207ENST00000515311 VSIG10Q8N0Z9 540 aa27.18■■□□□ 1.94
LSM6-207ENST00000515311 SOS1Q07889 1333 aaPredicted RBP27.17■■□□□ 1.94
LSM6-207ENST00000515311 LOC102724428A0A0B4J2F2 783 aa27.16■■□□□ 1.94
LSM6-207ENST00000515311 SIK1P57059 783 aa27.16■■□□□ 1.94
LSM6-207ENST00000515311 SF3B2Q13435 895 aaKnown RBP27.16■■□□□ 1.94
LSM6-207ENST00000515311 RBM42Q9BTD8 480 aaKnown RBP27.16■■□□□ 1.94
LSM6-207ENST00000515311 HOXB7P09629 217 aa27.15■■□□□ 1.94
LSM6-207ENST00000515311 SNRPA1P09661 255 aaKnown RBP27.15■■□□□ 1.94
LSM6-207ENST00000515311 EXOSC9Q06265 439 aaKnown RBP27.15■■□□□ 1.94
LSM6-207ENST00000515311 COL5A3P25940 1745 aaPredicted RBP27.14■■□□□ 1.94
LSM6-207ENST00000515311 GIGYF1O75420 1035 aaPredicted RBP27.14■■□□□ 1.94
LSM6-207ENST00000515311 C8orf58Q8NAV2 365 aa27.14■■□□□ 1.94
LSM6-207ENST00000515311 TAF1LQ8IZX4 1826 aa27.13■■□□□ 1.93
LSM6-207ENST00000515311 KRT24Q2M2I5 525 aa27.13■■□□□ 1.93
LSM6-207ENST00000515311 SLC4A9Q96Q91 983 aa27.13■■□□□ 1.93
LSM6-207ENST00000515311 SLC27A3Q5K4L6 730 aa27.12■■□□□ 1.93
LSM6-207ENST00000515311 TEX13AQ9BXU3 409 aaPredicted RBP27.12■■□□□ 1.93
LSM6-207ENST00000515311 BAG6P46379 1132 aa27.11■■□□□ 1.93
LSM6-207ENST00000515311 CT47B1P0C2W7 299 aaPredicted RBP27.1■■□□□ 1.93
LSM6-207ENST00000515311 ATP6V1AP38606 617 aa27.1■■□□□ 1.93
LSM6-207ENST00000515311 TWISTNBQ3B726 338 aaPredicted RBP27.1■■□□□ 1.93
LSM6-207ENST00000515311 TSPYL6Q8N831 410 aa27.1■■□□□ 1.93
LSM6-207ENST00000515311 CCNL1Q9UK58 526 aaPredicted RBP27.1■■□□□ 1.93
LSM6-207ENST00000515311 RREB1Q92766 1687 aa27.1■■□□□ 1.93
LSM6-207ENST00000515311 UPF1Q92900 1129 aaKnown RBP eCLIP27.09■■□□□ 1.93
LSM6-207ENST00000515311 HMGB2P26583 209 aaKnown RBP27.08■■□□□ 1.93
LSM6-207ENST00000515311 TXNRD1Q16881 649 aa27.08■■□□□ 1.93
LSM6-207ENST00000515311 CHMP4AQ9BY43 222 aa27.08■■□□□ 1.93
LSM6-207ENST00000515311 ELL2O00472 640 aaPredicted RBP27.07■■□□□ 1.92
LSM6-207ENST00000515311 ITPK1Q13572 414 aa27.07■■□□□ 1.92
LSM6-207ENST00000515311 CAMKK2Q96RR4 588 aa27.07■■□□□ 1.92
LSM6-207ENST00000515311 PRAMEF22A3QJZ6 481 aa27.06■■□□□ 1.92
LSM6-207ENST00000515311 VAMP4O75379 141 aa27.06■■□□□ 1.92
LSM6-207ENST00000515311 DNAJC10Q8IXB1 793 aa27.06■■□□□ 1.92
LSM6-207ENST00000515311 PROM2Q8N271 834 aa27.06■■□□□ 1.92
LSM6-207ENST00000515311 ZNF428Q96B54 188 aa27.06■■□□□ 1.92
LSM6-207ENST00000515311 STARD3NLO95772 234 aa27.05■■□□□ 1.92
LSM6-207ENST00000515311 EN1Q05925 392 aaPredicted RBP27.04■■□□□ 1.92
LSM6-207ENST00000515311 LRRC4BQ9NT99 713 aa27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms