RNA–Protein interactions for RNA: ENST00000513989.5

NEDD9-214, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 4

Gene NEDD9, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-214ENST00000513989 IFNL2Q8IZJ0 200 aa13.34□□□□□ -0.27
NEDD9-214ENST00000513989 DDX54Q8TDD1 881 aaKnown RBP13.34□□□□□ -0.27
NEDD9-214ENST00000513989 PHACTR3Q96KR7 559 aa13.34□□□□□ -0.27
NEDD9-214ENST00000513989 STK32BQ9NY57 414 aa13.34□□□□□ -0.27
NEDD9-214ENST00000513989 ATF5Q9Y2D1 282 aaPredicted RBP13.34□□□□□ -0.27
NEDD9-214ENST00000513989 HTATSF1O43719 755 aaKnown RBP13.33□□□□□ -0.28
NEDD9-214ENST00000513989 RIPK4P57078 832 aa13.33□□□□□ -0.28
NEDD9-214ENST00000513989 NEUROD2Q15784 382 aa13.33□□□□□ -0.28
NEDD9-214ENST00000513989 NCBP3Q53F19 620 aaKnown RBP13.33□□□□□ -0.28
NEDD9-214ENST00000513989 AKAP4Q5JQC9 854 aa13.33□□□□□ -0.28
NEDD9-214ENST00000513989 PKD1L3Q7Z443 1732 aa13.33□□□□□ -0.28
NEDD9-214ENST00000513989 C5P01031 1676 aa13.32□□□□□ -0.28
NEDD9-214ENST00000513989 GNAT3A8MTJ3 354 aa13.32□□□□□ -0.28
NEDD9-214ENST00000513989 TMPOP42166 694 aaKnown RBP13.32□□□□□ -0.28
NEDD9-214ENST00000513989 PCDH11XQ9BZA7 1347 aa13.32□□□□□ -0.28
NEDD9-214ENST00000513989 PCDH11YQ9BZA8 1340 aa13.32□□□□□ -0.28
NEDD9-214ENST00000513989 NCAPD2Q15021 1401 aa13.31□□□□□ -0.28
NEDD9-214ENST00000513989 CALD1Q05682 793 aaKnown RBP13.31□□□□□ -0.28
NEDD9-214ENST00000513989 MTFR1LQ9H019 292 aa13.31□□□□□ -0.28
NEDD9-214ENST00000513989 YY1P25490 414 aa13.3□□□□□ -0.28
NEDD9-214ENST00000513989 AKT1S1Q96B36 256 aa13.3□□□□□ -0.28
NEDD9-214ENST00000513989 PHKG2P15735 406 aa13.29□□□□□ -0.28
NEDD9-214ENST00000513989 KCNQ4P56696 695 aa13.29□□□□□ -0.28
NEDD9-214ENST00000513989 HNRNPUQ00839 825 aaKnown RBP eCLIP13.29□□□□□ -0.28
NEDD9-214ENST00000513989 DCAF5Q96JK2 942 aa13.29□□□□□ -0.28
NEDD9-214ENST00000513989 FHDC1Q9C0D6 1143 aaPredicted RBP13.29□□□□□ -0.28
NEDD9-214ENST00000513989 RRP7AQ9Y3A4 280 aaKnown RBP13.29□□□□□ -0.28
NEDD9-214ENST00000513989 SALL2Q9Y467 1007 aaPredicted RBP13.29□□□□□ -0.28
NEDD9-214ENST00000513989 PRIM1P49642 420 aaKnown RBP13.28□□□□□ -0.28
NEDD9-214ENST00000513989 CCDC27Q2M243 656 aa13.28□□□□□ -0.28
NEDD9-214ENST00000513989 SYT17Q9BSW7 474 aa13.28□□□□□ -0.28
NEDD9-214ENST00000513989 CYP27B1O15528 508 aa13.27□□□□□ -0.29
NEDD9-214ENST00000513989 NKX1-1Q15270 411 aaPredicted RBP13.27□□□□□ -0.29
NEDD9-214ENST00000513989 PNPLA7Q6ZV29 1317 aa13.27□□□□□ -0.29
NEDD9-214ENST00000513989 MAP3K5Q99683 1374 aa13.27□□□□□ -0.29
NEDD9-214ENST00000513989 UBR3Q6ZT12 1888 aa13.27□□□□□ -0.29
NEDD9-214ENST00000513989 ERVV-2B6SEH9 535 aa13.26□□□□□ -0.29
NEDD9-214ENST00000513989 SLC27A3Q5K4L6 730 aa13.26□□□□□ -0.29
NEDD9-214ENST00000513989 MPRIPQ6WCQ1 1025 aa13.26□□□□□ -0.29
NEDD9-214ENST00000513989 RNMTO43148 476 aaKnown RBP13.25□□□□□ -0.29
NEDD9-214ENST00000513989 CABP4P57796 275 aa13.25□□□□□ -0.29
NEDD9-214ENST00000513989 TEFQ10587 303 aa13.25□□□□□ -0.29
NEDD9-214ENST00000513989 WDR63Q8IWG1 891 aa13.25□□□□□ -0.29
NEDD9-214ENST00000513989 WWC1Q8IX03 1113 aa13.25□□□□□ -0.29
NEDD9-214ENST00000513989 SYTL4Q96C24 671 aaPredicted RBP13.24□□□□□ -0.29
NEDD9-214ENST00000513989 YTHDC1Q96MU7 727 aaKnown RBP13.24□□□□□ -0.29
NEDD9-214ENST00000513989 ARXQ96QS3 562 aa13.24□□□□□ -0.29
NEDD9-214ENST00000513989 TRIM35Q9UPQ4 493 aa13.24□□□□□ -0.29
NEDD9-214ENST00000513989 TAF7Q15545 349 aaPredicted RBP13.23□□□□□ -0.29
NEDD9-214ENST00000513989 MCM10Q7L590 875 aa13.23□□□□□ -0.29
NEDD9-214ENST00000513989 IL17REQ8NFR9 667 aa13.23□□□□□ -0.29
NEDD9-214ENST00000513989 LGR6Q9HBX8 967 aa13.23□□□□□ -0.29
NEDD9-214ENST00000513989 C4BP0C0L5 1744 aa13.22□□□□□ -0.29
NEDD9-214ENST00000513989 SENP3-EIF4A1A0A087X0R7 540 aa13.22□□□□□ -0.29
NEDD9-214ENST00000513989 BABAM1Q9NWV8 329 aa13.22□□□□□ -0.29
NEDD9-214ENST00000513989 GNAI1P63096 354 aa13.21□□□□□ -0.29
NEDD9-214ENST00000513989 GOLGA2Q08379 1002 aa13.21□□□□□ -0.29
NEDD9-214ENST00000513989 DCTN1Q14203 1278 aa13.21□□□□□ -0.29
NEDD9-214ENST00000513989 NFATC2IPQ8NCF5 419 aa13.21□□□□□ -0.29
NEDD9-214ENST00000513989 SLC52A2Q9HAB3 445 aa13.21□□□□□ -0.29
NEDD9-214ENST00000513989 TMOD3Q9NYL9 352 aa13.21□□□□□ -0.29
NEDD9-214ENST00000513989 LAS1LQ9Y4W2 734 aaKnown RBP13.21□□□□□ -0.29
NEDD9-214ENST00000513989 IL16Q14005 1332 aa13.2□□□□□ -0.3
NEDD9-214ENST00000513989 BTBD11A6QL63 1104 aa13.2□□□□□ -0.3
NEDD9-214ENST00000513989 SLC16A10Q8TF71 515 aa13.2□□□□□ -0.3
NEDD9-214ENST00000513989 MYH16Q9H6N6 1097 aa13.2□□□□□ -0.3
NEDD9-214ENST00000513989 CCNL1Q9UK58 526 aaPredicted RBP13.2□□□□□ -0.3
NEDD9-214ENST00000513989 ZBED9Q6R2W3 1325 aa13.19□□□□□ -0.3
NEDD9-214ENST00000513989 E9PSI1 815 aa13.19□□□□□ -0.3
NEDD9-214ENST00000513989 CFAP44Q96MT7 982 aa13.19□□□□□ -0.3
NEDD9-214ENST00000513989 IFT57Q9NWB7 429 aa13.19□□□□□ -0.3
NEDD9-214ENST00000513989 TFCP2L1Q9NZI6 479 aa13.19□□□□□ -0.3
NEDD9-214ENST00000513989 DCAF8L1A6NGE4 600 aa13.18□□□□□ -0.3
NEDD9-214ENST00000513989 HMGB2P26583 209 aaKnown RBP13.18□□□□□ -0.3
NEDD9-214ENST00000513989 AMIGO3Q86WK7 504 aa13.18□□□□□ -0.3
NEDD9-214ENST00000513989 COL23A1Q86Y22 540 aaPredicted RBP13.18□□□□□ -0.3
NEDD9-214ENST00000513989 ZNF784Q8NCA9 323 aaPredicted RBP13.18□□□□□ -0.3
NEDD9-214ENST00000513989 THUMPD2Q9BTF0 503 aaKnown RBP13.18□□□□□ -0.3
NEDD9-214ENST00000513989 TSPYL4Q9UJ04 414 aa13.18□□□□□ -0.3
NEDD9-214ENST00000513989 PALLDQ8WX93 1383 aa13.18□□□□□ -0.3
NEDD9-214ENST00000513989 VIRMAQ69YN4 1812 aaKnown RBP13.18□□□□□ -0.3
NEDD9-214ENST00000513989 TTC5Q8N0Z6 440 aa13.17□□□□□ -0.3
NEDD9-214ENST00000513989 NLGN2Q8NFZ4 835 aa13.17□□□□□ -0.3
NEDD9-214ENST00000513989 CEMIPQ8WUJ3 1361 aa13.17□□□□□ -0.3
NEDD9-214ENST00000513989 CHL1O00533 1208 aa13.16□□□□□ -0.3
NEDD9-214ENST00000513989 PIGBQ92521 554 aa13.16□□□□□ -0.3
NEDD9-214ENST00000513989 SMARCC1Q92922 1105 aaPredicted RBP13.16□□□□□ -0.3
NEDD9-214ENST00000513989 CHMP4AQ9BY43 222 aa13.16□□□□□ -0.3
NEDD9-214ENST00000513989 COL5A3P25940 1745 aaPredicted RBP13.16□□□□□ -0.3
NEDD9-214ENST00000513989 ZNF521Q96K83 1311 aa13.15□□□□□ -0.3
NEDD9-214ENST00000513989 ZNF831Q5JPB2 1677 aa13.15□□□□□ -0.3
NEDD9-214ENST00000513989 MIS18AQ9NYP9 233 aa13.15□□□□□ -0.3
NEDD9-214ENST00000513989 MYH14Q7Z406 1995 aaKnown RBP13.14□□□□□ -0.31
NEDD9-214ENST00000513989 ZNF853P0CG23 659 aa13.14□□□□□ -0.31
NEDD9-214ENST00000513989 SLFN5Q08AF3 891 aa13.14□□□□□ -0.31
NEDD9-214ENST00000513989 KIAA1551Q9HCM1 1747 aa13.13□□□□□ -0.31
NEDD9-214ENST00000513989 KIF13BQ9NQT8 1826 aa13.13□□□□□ -0.31
NEDD9-214ENST00000513989 POLD1P28340 1107 aa13.13□□□□□ -0.31
NEDD9-214ENST00000513989 MSL1Q68DK7 614 aa13.13□□□□□ -0.31
NEDD9-214ENST00000513989 ZNF790Q6PG37 636 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms