RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 PLA2G4EQ3MJ16 856 aa7.6□□□□□ -1.19
NUP54-212ENST00000513248 GTPBP3Q969Y2 492 aaKnown RBP7.6□□□□□ -1.19
NUP54-212ENST00000513248 CNTNAP5Q8WYK1 1306 aa7.59□□□□□ -1.19
NUP54-212ENST00000513248 MX2P20592 715 aa7.59□□□□□ -1.19
NUP54-212ENST00000513248 VAC14Q08AM6 782 aa7.59□□□□□ -1.19
NUP54-212ENST00000513248 WASHC4Q2M389 1173 aa7.59□□□□□ -1.19
NUP54-212ENST00000513248 NEDD1Q8NHV4 660 aa7.59□□□□□ -1.19
NUP54-212ENST00000513248 F11P03951 625 aa7.58□□□□□ -1.2
NUP54-212ENST00000513248 MAP2K3P46734 347 aa7.58□□□□□ -1.2
NUP54-212ENST00000513248 EIF4G2P78344 907 aaKnown RBP eCLIP7.58□□□□□ -1.2
NUP54-212ENST00000513248 TAS1R3Q7RTX0 852 aa7.58□□□□□ -1.2
NUP54-212ENST00000513248 ADAMTS19Q8TE59 1207 aa7.58□□□□□ -1.2
NUP54-212ENST00000513248 GAS2L1Q99501 681 aaPredicted RBP7.58□□□□□ -1.2
NUP54-212ENST00000513248 SPOCK3Q9BQ16 436 aa7.58□□□□□ -1.2
NUP54-212ENST00000513248 CFHR5Q9BXR6 569 aa7.58□□□□□ -1.2
NUP54-212ENST00000513248 TIMMDC1Q9NPL8 285 aa7.58□□□□□ -1.2
NUP54-212ENST00000513248 POM121CA8CG34 1229 aa7.57□□□□□ -1.2
NUP54-212ENST00000513248 WASLO00401 505 aaPredicted RBP7.57□□□□□ -1.2
NUP54-212ENST00000513248 OIP5O43482 229 aa7.57□□□□□ -1.2
NUP54-212ENST00000513248 WWC1Q8IX03 1113 aa7.57□□□□□ -1.2
NUP54-212ENST00000513248 NUCKS1Q9H1E3 243 aaKnown RBP7.57□□□□□ -1.2
NUP54-212ENST00000513248 OSBPL3Q9H4L5 887 aa7.57□□□□□ -1.2
NUP54-212ENST00000513248 ALG2Q9H553 416 aa7.57□□□□□ -1.2
NUP54-212ENST00000513248 GNRH1P01148 92 aa7.56□□□□□ -1.2
NUP54-212ENST00000513248 ITGB2P05107 769 aa7.56□□□□□ -1.2
NUP54-212ENST00000513248 SCTRP47872 440 aa7.56□□□□□ -1.2
NUP54-212ENST00000513248 ALYREFQ86V81 257 aaKnown RBP7.56□□□□□ -1.2
NUP54-212ENST00000513248 ADAM23O75077 832 aa7.55□□□□□ -1.2
NUP54-212ENST00000513248 PROCP04070 461 aa7.55□□□□□ -1.2
NUP54-212ENST00000513248 LBRQ14739 615 aaKnown RBP7.55□□□□□ -1.2
NUP54-212ENST00000513248 ESYT1Q9BSJ8 1104 aa7.55□□□□□ -1.2
NUP54-212ENST00000513248 OXCT2Q9BYC2 517 aaPredicted RBP7.55□□□□□ -1.2
NUP54-212ENST00000513248 ARHGEF10LQ9HCE6 1279 aa7.55□□□□□ -1.2
NUP54-212ENST00000513248 CEP126Q9P2H0 1117 aa7.55□□□□□ -1.2
NUP54-212ENST00000513248 PCDHB11Q9Y5F2 797 aa7.55□□□□□ -1.2
NUP54-212ENST00000513248 ESF1Q9H501 851 aaKnown RBP7.54□□□□□ -1.2
NUP54-212ENST00000513248 C1orf115Q9H7X2 142 aa7.54□□□□□ -1.2
NUP54-212ENST00000513248 PHF24Q9UPV7 400 aa7.54□□□□□ -1.2
NUP54-212ENST00000513248 A0A1B0GTH6 734 aa7.53□□□□□ -1.2
NUP54-212ENST00000513248 SOX11P35716 441 aa7.53□□□□□ -1.2
NUP54-212ENST00000513248 THBS1P07996 1170 aa7.52□□□□□ -1.21
NUP54-212ENST00000513248 PHTF2Q8N3S3 785 aa7.52□□□□□ -1.21
NUP54-212ENST00000513248 CNKSR1Q969H4 720 aa7.52□□□□□ -1.21
NUP54-212ENST00000513248 GDF2Q9UK05 429 aaPredicted RBP7.52□□□□□ -1.21
NUP54-212ENST00000513248 CHIC2Q9UKJ5 165 aa7.52□□□□□ -1.21
NUP54-212ENST00000513248 HRH3Q9Y5N1 445 aa7.52□□□□□ -1.21
NUP54-212ENST00000513248 IL2RAP01589 272 aa7.51□□□□□ -1.21
NUP54-212ENST00000513248 CENPCQ03188 943 aa7.51□□□□□ -1.21
NUP54-212ENST00000513248 SEMA3FQ13275 785 aa7.51□□□□□ -1.21
NUP54-212ENST00000513248 SLFNL1Q499Z3 407 aa7.51□□□□□ -1.21
NUP54-212ENST00000513248 CCDC85AQ96PX6 553 aaPredicted RBP7.51□□□□□ -1.21
NUP54-212ENST00000513248 MKL2Q9ULH7 1088 aa7.51□□□□□ -1.21
NUP54-212ENST00000513248 MYCP01106 439 aaPredicted RBP7.5□□□□□ -1.21
NUP54-212ENST00000513248 UBAP2LQ14157 1087 aaKnown RBP7.5□□□□□ -1.21
NUP54-212ENST00000513248 GALNT6Q8NCL4 622 aa7.5□□□□□ -1.21
NUP54-212ENST00000513248 XAGE2Q96GT9 111 aa7.5□□□□□ -1.21
NUP54-212ENST00000513248 ZNF777Q9ULD5 760 aaPredicted RBP7.5□□□□□ -1.21
NUP54-212ENST00000513248 HDGFL1Q5TGJ6 251 aa7.49□□□□□ -1.21
NUP54-212ENST00000513248 RNF135Q8IUD6 432 aa7.49□□□□□ -1.21
NUP54-212ENST00000513248 GOLGA6L1Q8N7Z2 621 aa7.49□□□□□ -1.21
NUP54-212ENST00000513248 GLMNQ92990 594 aa7.49□□□□□ -1.21
NUP54-212ENST00000513248 KLRG1Q96E93 195 aa7.49□□□□□ -1.21
NUP54-212ENST00000513248 UCN2Q96RP3 112 aa7.49□□□□□ -1.21
NUP54-212ENST00000513248 ZSCAN10Q96SZ4 725 aaPredicted RBP7.49□□□□□ -1.21
NUP54-212ENST00000513248 FHDC1Q9C0D6 1143 aaPredicted RBP7.49□□□□□ -1.21
NUP54-212ENST00000513248 RAB6BQ9NRW1 208 aa7.49□□□□□ -1.21
NUP54-212ENST00000513248 SHISA8B8ZZ34 492 aa7.48□□□□□ -1.21
NUP54-212ENST00000513248 GTF2E1P29083 439 aaPredicted RBP7.48□□□□□ -1.21
NUP54-212ENST00000513248 SNRPNP63162 240 aaKnown RBP7.48□□□□□ -1.21
NUP54-212ENST00000513248 GNASQ5JWF2 1037 aa7.48□□□□□ -1.21
NUP54-212ENST00000513248 ATXN7L1Q9ULK2 861 aaPredicted RBP7.48□□□□□ -1.21
NUP54-212ENST00000513248 DOLKQ9UPQ8 538 aa7.48□□□□□ -1.21
NUP54-212ENST00000513248 CSB-PGBD3P0DP91 1061 aa7.47□□□□□ -1.21
NUP54-212ENST00000513248 ESCO1Q5FWF5 840 aa7.47□□□□□ -1.21
NUP54-212ENST00000513248 PGBD3Q8N328 593 aa7.47□□□□□ -1.21
NUP54-212ENST00000513248 CDCA7Q9BWT1 371 aaPredicted RBP7.47□□□□□ -1.21
NUP54-212ENST00000513248 GPAMQ9HCL2 828 aa7.47□□□□□ -1.21
NUP54-212ENST00000513248 KRBA1A5PL33 1030 aa7.46□□□□□ -1.22
NUP54-212ENST00000513248 PIK3R2O00459 728 aa7.46□□□□□ -1.22
NUP54-212ENST00000513248 EFHC2Q5JST6 749 aa7.46□□□□□ -1.22
NUP54-212ENST00000513248 XP32Q5T750 250 aa7.46□□□□□ -1.22
NUP54-212ENST00000513248 SLCO4C1Q6ZQN7 724 aa7.46□□□□□ -1.22
NUP54-212ENST00000513248 C1orf229Q6ZS94 237 aaPredicted RBP7.46□□□□□ -1.22
NUP54-212ENST00000513248 EDARADDQ8WWZ3 215 aa7.46□□□□□ -1.22
NUP54-212ENST00000513248 ARID3CA6NKF2 412 aa7.45□□□□□ -1.22
NUP54-212ENST00000513248 K7ELQ4 463 aaPredicted RBP7.45□□□□□ -1.22
NUP54-212ENST00000513248 TSGA10IPQ3SY00 556 aa7.45□□□□□ -1.22
NUP54-212ENST00000513248 C4orf17Q53FE4 359 aa7.45□□□□□ -1.22
NUP54-212ENST00000513248 TMEM214Q6NUQ4 689 aaKnown RBP7.45□□□□□ -1.22
NUP54-212ENST00000513248 NFATC2IPQ8NCF5 419 aa7.45□□□□□ -1.22
NUP54-212ENST00000513248 CRISPLD1Q9H336 500 aa7.45□□□□□ -1.22
NUP54-212ENST00000513248 NDFIP2Q9NV92 336 aa7.45□□□□□ -1.22
NUP54-212ENST00000513248 PIK3CDO00329 1044 aa7.44□□□□□ -1.22
NUP54-212ENST00000513248 COL8A1P27658 744 aa7.44□□□□□ -1.22
NUP54-212ENST00000513248 MSX1P28360 303 aa7.44□□□□□ -1.22
NUP54-212ENST00000513248 PHKA2P46019 1235 aa7.44□□□□□ -1.22
NUP54-212ENST00000513248 OXLD1Q5BKU9 147 aa7.44□□□□□ -1.22
NUP54-212ENST00000513248 PLPP7Q8NBV4 271 aa7.44□□□□□ -1.22
NUP54-212ENST00000513248 RHBDD1Q8TEB9 315 aa7.44□□□□□ -1.22
NUP54-212ENST00000513248 SUPT5HO00267 1087 aaKnown RBP7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms