RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 TOMM70O94826 608 aa26.66■■□□□ 1.86
HMGCS1-206ENST00000511774 ATP6V1AP38606 617 aa26.66■■□□□ 1.86
HMGCS1-206ENST00000511774 SLC4A9Q96Q91 983 aa26.66■■□□□ 1.86
HMGCS1-206ENST00000511774 ATG3Q9NT62 314 aa26.66■■□□□ 1.86
HMGCS1-206ENST00000511774 TMOD3Q9NYL9 352 aa26.66■■□□□ 1.86
HMGCS1-206ENST00000511774 BCS1LQ9Y276 419 aa26.66■■□□□ 1.86
HMGCS1-206ENST00000511774 KDRP35968 1356 aa26.65■■□□□ 1.86
HMGCS1-206ENST00000511774 PCNTO95613 3336 aa26.65■■□□□ 1.86
HMGCS1-206ENST00000511774 SPG7Q9UQ90 795 aa26.64■■□□□ 1.86
HMGCS1-206ENST00000511774 HTRA3P83110 453 aa26.63■■□□□ 1.85
HMGCS1-206ENST00000511774 EYA1Q99502 592 aa26.63■■□□□ 1.85
HMGCS1-206ENST00000511774 C4AP0C0L4 1744 aa26.62■■□□□ 1.85
HMGCS1-206ENST00000511774 DPEP1P16444 411 aa26.62■■□□□ 1.85
HMGCS1-206ENST00000511774 TGFB2P61812 414 aa26.62■■□□□ 1.85
HMGCS1-206ENST00000511774 MYH14Q7Z406 1995 aaKnown RBP26.62■■□□□ 1.85
HMGCS1-206ENST00000511774 COL5A3P25940 1745 aaPredicted RBP26.62■■□□□ 1.85
HMGCS1-206ENST00000511774 PHKG2P15735 406 aa26.61■■□□□ 1.85
HMGCS1-206ENST00000511774 ARHGAP27Q6ZUM4 889 aa26.61■■□□□ 1.85
HMGCS1-206ENST00000511774 PPM1GO15355 546 aaPredicted RBP26.6■■□□□ 1.85
HMGCS1-206ENST00000511774 ARFGEF1Q9Y6D6 1849 aa26.6■■□□□ 1.85
HMGCS1-206ENST00000511774 SLC24A1O60721 1099 aa26.59■■□□□ 1.85
HMGCS1-206ENST00000511774 KCNA3P22001 575 aa26.59■■□□□ 1.85
HMGCS1-206ENST00000511774 TMF1P82094 1093 aa26.59■■□□□ 1.85
HMGCS1-206ENST00000511774 ZNF831Q5JPB2 1677 aa26.58■■□□□ 1.85
HMGCS1-206ENST00000511774 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.58■■□□□ 1.857e-15■□□□□ 9.5
HMGCS1-206ENST00000511774 WASHC2AQ641Q2 1341 aa26.58■■□□□ 1.85
HMGCS1-206ENST00000511774 GYS1P13807 737 aa26.57■■□□□ 1.84
HMGCS1-206ENST00000511774 ARHGEF1Q92888 912 aaKnown RBP26.57■■□□□ 1.84
HMGCS1-206ENST00000511774 FCHSD2O94868 740 aa26.56■■□□□ 1.84
HMGCS1-206ENST00000511774 TRAPPC3LQ5T215 181 aa26.56■■□□□ 1.84
HMGCS1-206ENST00000511774 IFNL2Q8IZJ0 200 aa26.56■■□□□ 1.84
HMGCS1-206ENST00000511774 NLGN1Q8N2Q7 840 aa26.56■■□□□ 1.84
HMGCS1-206ENST00000511774 RTCBQ9Y3I0 505 aaKnown RBP26.56■■□□□ 1.84
HMGCS1-206ENST00000511774 COL13A1Q5TAT6 717 aaPredicted RBP26.55■■□□□ 1.84
HMGCS1-206ENST00000511774 C9orf131Q5VYM1 1079 aa26.55■■□□□ 1.84
HMGCS1-206ENST00000511774 RBM46Q8TBY0 533 aaKnown RBP26.54■■□□□ 1.84
HMGCS1-206ENST00000511774 KCPQ6ZWJ8 1503 aa26.53■■□□□ 1.84
HMGCS1-206ENST00000511774 SBF1O95248 1867 aa26.52■■□□□ 1.84
HMGCS1-206ENST00000511774 RBM42Q9BTD8 480 aaKnown RBP26.52■■□□□ 1.84
HMGCS1-206ENST00000511774 CCDC87Q9NVE4 849 aa26.52■■□□□ 1.84
HMGCS1-206ENST00000511774 RC3H1Q5TC82 1133 aaKnown RBP26.51■■□□□ 1.83
HMGCS1-206ENST00000511774 KLRG1Q96E93 195 aa26.51■■□□□ 1.83
HMGCS1-206ENST00000511774 POLKQ9UBT6 870 aa26.51■■□□□ 1.83
HMGCS1-206ENST00000511774 CNTNAP4Q9C0A0 1308 aa26.5■■□□□ 1.83
HMGCS1-206ENST00000511774 JMYQ8N9B5 988 aa26.5■■□□□ 1.83
HMGCS1-206ENST00000511774 RPS6KA4O75676 772 aa26.49■■□□□ 1.83
HMGCS1-206ENST00000511774 EIF4A2Q14240 407 aaKnown RBP26.49■■□□□ 1.83
HMGCS1-206ENST00000511774 ADRA2BP18089 450 aa26.48■■□□□ 1.83
HMGCS1-206ENST00000511774 PARP3Q9Y6F1 533 aa26.48■■□□□ 1.83
HMGCS1-206ENST00000511774 KDM6AO15550 1401 aaPredicted RBP26.48■■□□□ 1.83
HMGCS1-206ENST00000511774 RFC4P35249 363 aa26.47■■□□□ 1.83
HMGCS1-206ENST00000511774 DCAF5Q96JK2 942 aa26.47■■□□□ 1.83
HMGCS1-206ENST00000511774 SRP68Q9UHB9 627 aaKnown RBP26.47■■□□□ 1.83
HMGCS1-206ENST00000511774 PLEKHG2Q9H7P9 1386 aa26.46■■□□□ 1.83
HMGCS1-206ENST00000511774 DDR1Q08345 913 aa26.46■■□□□ 1.83
HMGCS1-206ENST00000511774 ADAMTS7Q9UKP4 1686 aa26.45■■□□□ 1.82
HMGCS1-206ENST00000511774 ERVV-2B6SEH9 535 aa26.44■■□□□ 1.82
HMGCS1-206ENST00000511774 FSTL1Q12841 308 aa26.44■■□□□ 1.82
HMGCS1-206ENST00000511774 FKBP8Q14318 412 aa26.44■■□□□ 1.82
HMGCS1-206ENST00000511774 RRAGCQ9HB90 399 aa26.44■■□□□ 1.82
HMGCS1-206ENST00000511774 RNF181Q9P0P0 153 aa26.44■■□□□ 1.82
HMGCS1-206ENST00000511774 TNRC6CQ9HCJ0 1690 aaKnown RBP26.44■■□□□ 1.82
HMGCS1-206ENST00000511774 TJP1Q07157 1748 aa26.43■■□□□ 1.82
HMGCS1-206ENST00000511774 CHRNA5P30532 468 aa26.43■■□□□ 1.82
HMGCS1-206ENST00000511774 PIM2Q9P1W9 311 aa26.43■■□□□ 1.82
HMGCS1-206ENST00000511774 C16orf71Q8IYS4 520 aaPredicted RBP26.42■■□□□ 1.82
HMGCS1-206ENST00000511774 CAPN15O75808 1086 aa26.41■■□□□ 1.82
HMGCS1-206ENST00000511774 CDCA8Q53HL2 280 aa26.41■■□□□ 1.82
HMGCS1-206ENST00000511774 CRKLP46109 303 aaKnown RBP26.4■■□□□ 1.82
HMGCS1-206ENST00000511774 DALRD3Q5D0E6 543 aaKnown RBP26.4■■□□□ 1.82
HMGCS1-206ENST00000511774 USP42Q9H9J4 1324 aaKnown RBP26.39■■□□□ 1.82
HMGCS1-206ENST00000511774 PTCD1O75127 700 aaKnown RBP26.39■■□□□ 1.82
HMGCS1-206ENST00000511774 TNNT2P45379 298 aaPredicted RBP26.39■■□□□ 1.82
HMGCS1-206ENST00000511774 KDM2BQ8NHM5 1336 aa26.39■■□□□ 1.81
HMGCS1-206ENST00000511774 PRELPP51888 382 aa26.37■■□□□ 1.81
HMGCS1-206ENST00000511774 RASSF7Q02833 373 aa26.36■■□□□ 1.81
HMGCS1-206ENST00000511774 ZNF530Q6P9A1 599 aaPredicted RBP26.36■■□□□ 1.81
HMGCS1-206ENST00000511774 AFDNP55196 1824 aaKnown RBP26.35■■□□□ 1.81
HMGCS1-206ENST00000511774 POLRMTO00411 1230 aaKnown RBP26.35■■□□□ 1.81
HMGCS1-206ENST00000511774 CABP4P57796 275 aa26.35■■□□□ 1.81
HMGCS1-206ENST00000511774 HSP90AB1P08238 724 aaKnown RBP26.33■■□□□ 1.81
HMGCS1-206ENST00000511774 TM4SF1P30408 202 aa26.33■■□□□ 1.81
HMGCS1-206ENST00000511774 INTS5Q6P9B9 1019 aaKnown RBP26.33■■□□□ 1.81
HMGCS1-206ENST00000511774 AEBP1Q8IUX7 1158 aa26.33■■□□□ 1.81
HMGCS1-206ENST00000511774 TNS4Q8IZW8 715 aa26.33■■□□□ 1.81
HMGCS1-206ENST00000511774 CCDC88AQ3V6T2 1871 aa26.32■■□□□ 1.8
HMGCS1-206ENST00000511774 PLEKHO1Q53GL0 409 aaPredicted RBP26.32■■□□□ 1.8
HMGCS1-206ENST00000511774 NFATC2IPQ8NCF5 419 aa26.31■■□□□ 1.8
HMGCS1-206ENST00000511774 SMC1BQ8NDV3 1235 aa26.3■■□□□ 1.8
HMGCS1-206ENST00000511774 SCN11AQ9UI33 1791 aa26.3■■□□□ 1.8
HMGCS1-206ENST00000511774 DLEC1Q9Y238 1755 aa26.3■■□□□ 1.8
HMGCS1-206ENST00000511774 NRXN2Q9P2S2 1712 aa26.29■■□□□ 1.8
HMGCS1-206ENST00000511774 TIAM2Q8IVF5 1701 aa26.28■■□□□ 1.8
HMGCS1-206ENST00000511774 MTHFSP49914 203 aa26.28■■□□□ 1.8
HMGCS1-206ENST00000511774 USPL1Q5W0Q7 1092 aa26.27■■□□□ 1.8
HMGCS1-206ENST00000511774 HSPA1AP0DMV8 641 aaKnown RBP26.25■■□□□ 1.79
HMGCS1-206ENST00000511774 HSPA1BP0DMV9 641 aaKnown RBP26.25■■□□□ 1.79
HMGCS1-206ENST00000511774 AMOTQ4VCS5 1084 aa26.25■■□□□ 1.79
HMGCS1-206ENST00000511774 DNAJC10Q8IXB1 793 aa26.25■■□□□ 1.79
HMGCS1-206ENST00000511774 SOS1Q07889 1333 aaPredicted RBP26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms