RNA–Protein interactions for RNA: ENST00000505659.1

HMGB1P29-201, Transcript of high mobility group box 1 pseudogene 29, humanhuman

BASIC

Gene HMGB1P29, Length 499 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P29-201ENST00000505659 CALR3Q96L12 384 aaKnown RBP7.32□□□□□ -1.24
HMGB1P29-201ENST00000505659 TFIP11Q9UBB9 837 aaKnown RBP7.32□□□□□ -1.24
HMGB1P29-201ENST00000505659 GTF3C3Q9Y5Q9 886 aa7.32□□□□□ -1.24
HMGB1P29-201ENST00000505659 KRT76Q01546 638 aa7.31□□□□□ -1.24
HMGB1P29-201ENST00000505659 PSME1Q06323 249 aa7.31□□□□□ -1.24
HMGB1P29-201ENST00000505659 TAS1R3Q7RTX0 852 aa7.31□□□□□ -1.24
HMGB1P29-201ENST00000505659 PLEKHM2Q8IWE5 1019 aa7.31□□□□□ -1.24
HMGB1P29-201ENST00000505659 USP3Q9Y6I4 520 aa7.31□□□□□ -1.24
HMGB1P29-201ENST00000505659 CLDN10P78369 228 aa7.3□□□□□ -1.24
HMGB1P29-201ENST00000505659 C4orf17Q53FE4 359 aa7.3□□□□□ -1.24
HMGB1P29-201ENST00000505659 TMEM214Q6NUQ4 689 aaKnown RBP7.3□□□□□ -1.24
HMGB1P29-201ENST00000505659 RIPOR1Q6ZS17 1223 aa7.3□□□□□ -1.24
HMGB1P29-201ENST00000505659 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.3□□□□□ -1.24
HMGB1P29-201ENST00000505659 GAS2L1Q99501 681 aaPredicted RBP7.3□□□□□ -1.24
HMGB1P29-201ENST00000505659 TIMMDC1Q9NPL8 285 aa7.3□□□□□ -1.24
HMGB1P29-201ENST00000505659 MAFBQ9Y5Q3 323 aaPredicted RBP7.3□□□□□ -1.24
HMGB1P29-201ENST00000505659 PALM3A6NDB9 673 aaPredicted RBP7.29□□□□□ -1.24
HMGB1P29-201ENST00000505659 RNFT1Q5M7Z0 435 aa7.29□□□□□ -1.24
HMGB1P29-201ENST00000505659 NANOS1Q8WY41 292 aaKnown RBP7.29□□□□□ -1.24
HMGB1P29-201ENST00000505659 PPP1R12CQ9BZL4 782 aa7.29□□□□□ -1.24
HMGB1P29-201ENST00000505659 GPAMQ9HCL2 828 aa7.29□□□□□ -1.24
HMGB1P29-201ENST00000505659 ZNF358Q9NW07 568 aa7.29□□□□□ -1.24
HMGB1P29-201ENST00000505659 ZBTB7BO15156 539 aaPredicted RBP7.28□□□□□ -1.24
HMGB1P29-201ENST00000505659 LZTS3O60299 673 aaPredicted RBP7.28□□□□□ -1.24
HMGB1P29-201ENST00000505659 LORP23490 312 aaPredicted RBP7.28□□□□□ -1.24
HMGB1P29-201ENST00000505659 SMTNP53814 917 aa7.28□□□□□ -1.24
HMGB1P29-201ENST00000505659 GNASQ5JWF2 1037 aa7.28□□□□□ -1.24
HMGB1P29-201ENST00000505659 PPARGC1BQ86YN6 1023 aaKnown RBP7.28□□□□□ -1.24
HMGB1P29-201ENST00000505659 TPCN2Q8NHX9 752 aa7.28□□□□□ -1.24
HMGB1P29-201ENST00000505659 ZNF837Q96EG3 531 aaPredicted RBP7.28□□□□□ -1.24
HMGB1P29-201ENST00000505659 MKRN1Q9UHC7 482 aaKnown RBP7.28□□□□□ -1.24
HMGB1P29-201ENST00000505659 DYRK1BQ9Y463 629 aa7.28□□□□□ -1.24
HMGB1P29-201ENST00000505659 GPR25O00155 361 aa7.27□□□□□ -1.25
HMGB1P29-201ENST00000505659 THBS1P07996 1170 aa7.27□□□□□ -1.25
HMGB1P29-201ENST00000505659 PLA2G4AP47712 749 aa7.27□□□□□ -1.25
HMGB1P29-201ENST00000505659 DBN1Q16643 649 aa7.27□□□□□ -1.25
HMGB1P29-201ENST00000505659 SV2AQ7L0J3 742 aa7.27□□□□□ -1.25
HMGB1P29-201ENST00000505659 OGFOD1Q8N543 542 aa7.27□□□□□ -1.25
HMGB1P29-201ENST00000505659 RHBDD1Q8TEB9 315 aa7.27□□□□□ -1.25
HMGB1P29-201ENST00000505659 ZNF594Q96JF6 807 aaPredicted RBP7.27□□□□□ -1.25
HMGB1P29-201ENST00000505659 COL25A1Q9BXS0 654 aaPredicted RBP7.27□□□□□ -1.25
HMGB1P29-201ENST00000505659 IQSEC3Q9UPP2 1182 aaPredicted RBP7.27□□□□□ -1.25
HMGB1P29-201ENST00000505659 A6NJY4 79 aa7.26□□□□□ -1.25
HMGB1P29-201ENST00000505659 TRIM50Q86XT4 487 aa7.26□□□□□ -1.25
HMGB1P29-201ENST00000505659 ZNF295-AS1Q8N0V1 137 aa7.26□□□□□ -1.25
HMGB1P29-201ENST00000505659 CNTNAP3BQ96NU0 1288 aa7.26□□□□□ -1.25
HMGB1P29-201ENST00000505659 SLC4A9Q96Q91 983 aa7.26□□□□□ -1.25
HMGB1P29-201ENST00000505659 CNTNAP3Q9BZ76 1288 aa7.26□□□□□ -1.25
HMGB1P29-201ENST00000505659 DNAAF2Q9NVR5 837 aaKnown RBP7.26□□□□□ -1.25
HMGB1P29-201ENST00000505659 GTF2E1P29083 439 aaPredicted RBP7.25□□□□□ -1.25
HMGB1P29-201ENST00000505659 LMOD1P29536 600 aaPredicted RBP7.25□□□□□ -1.25
HMGB1P29-201ENST00000505659 GAS6Q14393 721 aa7.25□□□□□ -1.25
HMGB1P29-201ENST00000505659 MTFR1Q15390 333 aa7.25□□□□□ -1.25
HMGB1P29-201ENST00000505659 WDR44Q5JSH3 913 aa7.25□□□□□ -1.25
HMGB1P29-201ENST00000505659 TBCELQ5QJ74 424 aa7.25□□□□□ -1.25
HMGB1P29-201ENST00000505659 CCDC102BQ68D86 513 aa7.25□□□□□ -1.25
HMGB1P29-201ENST00000505659 TRIM22Q8IYM9 498 aa7.25□□□□□ -1.25
HMGB1P29-201ENST00000505659 TNS4Q8IZW8 715 aa7.25□□□□□ -1.25
HMGB1P29-201ENST00000505659 ZMYND15Q9H091 742 aa7.25□□□□□ -1.25
HMGB1P29-201ENST00000505659 RUBCNLQ9H714 662 aa7.25□□□□□ -1.25
HMGB1P29-201ENST00000505659 SFI1A8K8P3 1242 aa7.24□□□□□ -1.25
HMGB1P29-201ENST00000505659 DKK1O94907 266 aa7.24□□□□□ -1.25
HMGB1P29-201ENST00000505659 F11P03951 625 aa7.24□□□□□ -1.25
HMGB1P29-201ENST00000505659 MSX1P28360 303 aa7.24□□□□□ -1.25
HMGB1P29-201ENST00000505659 EPHA4P54764 986 aa7.24□□□□□ -1.25
HMGB1P29-201ENST00000505659 CRTC2Q53ET0 693 aaPredicted RBP7.24□□□□□ -1.25
HMGB1P29-201ENST00000505659 CFAP70Q5T0N1 1121 aa7.24□□□□□ -1.25
HMGB1P29-201ENST00000505659 GTPBP3Q969Y2 492 aaKnown RBP7.24□□□□□ -1.25
HMGB1P29-201ENST00000505659 PARP3Q9Y6F1 533 aa7.24□□□□□ -1.25
HMGB1P29-201ENST00000505659 A0A1B0GTH6 734 aa7.23□□□□□ -1.25
HMGB1P29-201ENST00000505659 RASA1P20936 1047 aa7.23□□□□□ -1.25
HMGB1P29-201ENST00000505659 ATP1A2P50993 1020 aa7.23□□□□□ -1.25
HMGB1P29-201ENST00000505659 INSM1Q01101 510 aaPredicted RBP7.23□□□□□ -1.25
HMGB1P29-201ENST00000505659 KANK4Q5T7N3 995 aaPredicted RBP7.23□□□□□ -1.25
HMGB1P29-201ENST00000505659 SCHIP1Q9P0W5 487 aaPredicted RBP7.23□□□□□ -1.25
HMGB1P29-201ENST00000505659 ARID3CA6NKF2 412 aa7.22□□□□□ -1.25
HMGB1P29-201ENST00000505659 CDK2AP1O14519 115 aa7.22□□□□□ -1.25
HMGB1P29-201ENST00000505659 LGR5O75473 907 aa7.22□□□□□ -1.25
HMGB1P29-201ENST00000505659 ATP4AP20648 1035 aa7.22□□□□□ -1.25
HMGB1P29-201ENST00000505659 CDCA8Q53HL2 280 aa7.22□□□□□ -1.25
HMGB1P29-201ENST00000505659 SIX5Q8N196 739 aa7.22□□□□□ -1.25
HMGB1P29-201ENST00000505659 TSEN2Q8NCE0 465 aaKnown RBP7.22□□□□□ -1.25
HMGB1P29-201ENST00000505659 ZDHHC1Q8WTX9 485 aa7.22□□□□□ -1.25
HMGB1P29-201ENST00000505659 NIFKQ9BYG3 293 aaKnown RBP7.22□□□□□ -1.25
HMGB1P29-201ENST00000505659 NUCKS1Q9H1E3 243 aaKnown RBP7.22□□□□□ -1.25
HMGB1P29-201ENST00000505659 CABP1Q9NZU7 370 aa7.22□□□□□ -1.25
HMGB1P29-201ENST00000505659 BACH1O14867 736 aa7.21□□□□□ -1.26
HMGB1P29-201ENST00000505659 RFX1P22670 979 aa7.21□□□□□ -1.26
HMGB1P29-201ENST00000505659 FOXK2Q01167 660 aa7.21□□□□□ -1.26
HMGB1P29-201ENST00000505659 SH3PXD2AQ5TCZ1 1133 aa7.21□□□□□ -1.26
HMGB1P29-201ENST00000505659 SLC9A9Q8IVB4 645 aa7.21□□□□□ -1.26
HMGB1P29-201ENST00000505659 LARGE2Q8N3Y3 721 aa7.21□□□□□ -1.26
HMGB1P29-201ENST00000505659 ZSCAN1Q8NBB4 408 aa7.21□□□□□ -1.26
HMGB1P29-201ENST00000505659 AIDAQ96BJ3 306 aa7.21□□□□□ -1.26
HMGB1P29-201ENST00000505659 TSPAN10Q9H1Z9 355 aaPredicted RBP7.21□□□□□ -1.26
HMGB1P29-201ENST00000505659 TXLNAP40222 546 aa7.2□□□□□ -1.26
HMGB1P29-201ENST00000505659 UBAP2LQ14157 1087 aaKnown RBP7.2□□□□□ -1.26
HMGB1P29-201ENST00000505659 USP17L15C9J2P7 530 aa7.19□□□□□ -1.26
HMGB1P29-201ENST00000505659 USP17L10C9JJH3 530 aa7.19□□□□□ -1.26
HMGB1P29-201ENST00000505659 USP17L13C9JLJ4 530 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms