RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 CABP4P57796 275 aa24.3■■□□□ 1.48
SQSTM1-209ENST00000504627 TAF1LQ8IZX4 1826 aa24.3■■□□□ 1.48
SQSTM1-209ENST00000504627 C4BP0C0L5 1744 aa24.29■■□□□ 1.48
SQSTM1-209ENST00000504627 KDRP35968 1356 aa24.29■■□□□ 1.48
SQSTM1-209ENST00000504627 DIEXFQ68CQ4 756 aaKnown RBP24.28■■□□□ 1.48
SQSTM1-209ENST00000504627 LINC00116Q8NCU8 138 aa24.28■■□□□ 1.48
SQSTM1-209ENST00000504627 RBM42Q9BTD8 480 aaKnown RBP24.28■■□□□ 1.48
SQSTM1-209ENST00000504627 DIAPH1O60610 1272 aaKnown RBP24.27■■□□□ 1.48
SQSTM1-209ENST00000504627 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.26■■□□□ 1.47
SQSTM1-209ENST00000504627 HMOX1P09601 288 aa24.26■■□□□ 1.47
SQSTM1-209ENST00000504627 ITPK1Q13572 414 aa24.26■■□□□ 1.47
SQSTM1-209ENST00000504627 SSFA2P28290 1259 aa24.25■■□□□ 1.47
SQSTM1-209ENST00000504627 GPR162Q16538 588 aa24.25■■□□□ 1.47
SQSTM1-209ENST00000504627 NPC1L1Q9UHC9 1359 aa24.25■■□□□ 1.47
SQSTM1-209ENST00000504627 KDM6AO15550 1401 aaPredicted RBP24.25■■□□□ 1.47
SQSTM1-209ENST00000504627 COL24A1Q17RW2 1714 aa24.24■■□□□ 1.47
SQSTM1-209ENST00000504627 GNPATO15228 680 aa24.24■■□□□ 1.47
SQSTM1-209ENST00000504627 SMIM5Q71RC9 77 aa24.24■■□□□ 1.47
SQSTM1-209ENST00000504627 DDX10Q13206 875 aaKnown RBP24.23■■□□□ 1.47
SQSTM1-209ENST00000504627 AMIGO3Q86WK7 504 aa24.23■■□□□ 1.47
SQSTM1-209ENST00000504627 PELP1Q8IZL8 1130 aaKnown RBP24.23■■□□□ 1.47
SQSTM1-209ENST00000504627 AKAP4Q5JQC9 854 aa24.22■■□□□ 1.47
SQSTM1-209ENST00000504627 NFATC2IPQ8NCF5 419 aa24.22■■□□□ 1.47
SQSTM1-209ENST00000504627 NLGN2Q8NFZ4 835 aa24.2■■□□□ 1.46
SQSTM1-209ENST00000504627 UTRNP46939 3433 aa24.19■■□□□ 1.46
SQSTM1-209ENST00000504627 U2SURPO15042 1029 aaKnown RBP24.19■■□□□ 1.46
SQSTM1-209ENST00000504627 PTCD1O75127 700 aaKnown RBP24.19■■□□□ 1.46
SQSTM1-209ENST00000504627 SLC4A9Q96Q91 983 aa24.19■■□□□ 1.46
SQSTM1-209ENST00000504627 RTCBQ9Y3I0 505 aaKnown RBP24.19■■□□□ 1.46
SQSTM1-209ENST00000504627 UBR3Q6ZT12 1888 aa24.19■■□□□ 1.46
SQSTM1-209ENST00000504627 TRAPPC3LQ5T215 181 aa24.17■■□□□ 1.46
SQSTM1-209ENST00000504627 MTHFSDQ2M296 383 aaKnown RBP24.15■■□□□ 1.46
SQSTM1-209ENST00000504627 RC3H1Q5TC82 1133 aaKnown RBP24.15■■□□□ 1.46
SQSTM1-209ENST00000504627 CFAP53Q96M91 514 aa24.15■■□□□ 1.46
SQSTM1-209ENST00000504627 LGR6Q9HBX8 967 aa24.15■■□□□ 1.46
SQSTM1-209ENST00000504627 CD2APQ9Y5K6 639 aa24.15■■□□□ 1.46
SQSTM1-209ENST00000504627 SLC52A2Q9HAB3 445 aa24.14■■□□□ 1.45
SQSTM1-209ENST00000504627 CNTNAP4Q9C0A0 1308 aa24.13■■□□□ 1.45
SQSTM1-209ENST00000504627 RNMTO43148 476 aaKnown RBP24.13■■□□□ 1.45
SQSTM1-209ENST00000504627 RPS6KA4O75676 772 aa24.11■■□□□ 1.45
SQSTM1-209ENST00000504627 ZNF831Q5JPB2 1677 aa24.11■■□□□ 1.45
SQSTM1-209ENST00000504627 SCN11AQ9UI33 1791 aa24.11■■□□□ 1.45
SQSTM1-209ENST00000504627 ADRA2BP18089 450 aa24.1■■□□□ 1.45
SQSTM1-209ENST00000504627 RFC4P35249 363 aa24.1■■□□□ 1.45
SQSTM1-209ENST00000504627 ARHGEF1Q92888 912 aaKnown RBP24.1■■□□□ 1.45
SQSTM1-209ENST00000504627 COL3A1P02461 1466 aaPredicted RBP24.1■■□□□ 1.45
SQSTM1-209ENST00000504627 GRIN3BO60391 1043 aa24.08■■□□□ 1.45
SQSTM1-209ENST00000504627 CRKLP46109 303 aaKnown RBP24.08■■□□□ 1.45
SQSTM1-209ENST00000504627 NLGN1Q8N2Q7 840 aa24.08■■□□□ 1.45
SQSTM1-209ENST00000504627 GAS2L2Q8NHY3 880 aa24.08■■□□□ 1.45
SQSTM1-209ENST00000504627 NUDCQ9Y266 331 aa24.08■■□□□ 1.45
SQSTM1-209ENST00000504627 MMP10P09238 476 aa24.07■■□□□ 1.44
SQSTM1-209ENST00000504627 SLC39A6Q13433 755 aa24.07■■□□□ 1.44
SQSTM1-209ENST00000504627 GOLGB1Q14789 3259 aaKnown RBP24.07■■□□□ 1.44
SQSTM1-209ENST00000504627 CHD4Q14839 1912 aa24.06■■□□□ 1.44
SQSTM1-209ENST00000504627 PPP2R1AP30153 589 aa24.06■■□□□ 1.44
SQSTM1-209ENST00000504627 COL5A3P25940 1745 aaPredicted RBP24.06■■□□□ 1.44
SQSTM1-209ENST00000504627 YBX3P16989 372 aaKnown RBP eCLIP24.05■■□□□ 1.44
SQSTM1-209ENST00000504627 ZNF784Q8NCA9 323 aaPredicted RBP24.05■■□□□ 1.44
SQSTM1-209ENST00000504627 GNAT3A8MTJ3 354 aa24.04■■□□□ 1.44
SQSTM1-209ENST00000504627 DNAJC10Q8IXB1 793 aa24.04■■□□□ 1.44
SQSTM1-209ENST00000504627 MRC1P22897 1456 aa24.04■■□□□ 1.44
SQSTM1-209ENST00000504627 GYS1P13807 737 aa24.03■■□□□ 1.44
SQSTM1-209ENST00000504627 TEFQ10587 303 aa24.03■■□□□ 1.44
SQSTM1-209ENST00000504627 PRKAR2BP31323 418 aa24.02■■□□□ 1.44
SQSTM1-209ENST00000504627 TTC5Q8N0Z6 440 aa24.02■■□□□ 1.44
SQSTM1-209ENST00000504627 U2AF1L5P0DN76 240 aaPredicted RBP24.01■■□□□ 1.43
SQSTM1-209ENST00000504627 U2AF1Q01081 240 aaKnown RBP eCLIP24.01■■□□□ 1.433e-6■□□□□ 8.7
SQSTM1-209ENST00000504627 CCDC87Q9NVE4 849 aa24.01■■□□□ 1.43
SQSTM1-209ENST00000504627 MYH14Q7Z406 1995 aaKnown RBP24.01■■□□□ 1.43
SQSTM1-209ENST00000504627 INTS5Q6P9B9 1019 aaKnown RBP24■■□□□ 1.43
SQSTM1-209ENST00000504627 WWC3Q9ULE0 1092 aa24■■□□□ 1.43
SQSTM1-209ENST00000504627 PARP3Q9Y6F1 533 aa24■■□□□ 1.43
SQSTM1-209ENST00000504627 IL17REQ8NFR9 667 aa23.99■■□□□ 1.43
SQSTM1-209ENST00000504627 RSPH6AQ9H0K4 717 aa23.99■■□□□ 1.43
SQSTM1-209ENST00000504627 TJP1Q07157 1748 aa23.98■■□□□ 1.43
SQSTM1-209ENST00000504627 ANP32CO43423 234 aa23.98■■□□□ 1.43
SQSTM1-209ENST00000504627 PHACTR3Q96KR7 559 aa23.98■■□□□ 1.43
SQSTM1-209ENST00000504627 SRP68Q9UHB9 627 aaKnown RBP23.98■■□□□ 1.43
SQSTM1-209ENST00000504627 VIRMAQ69YN4 1812 aaKnown RBP23.98■■□□□ 1.43
SQSTM1-209ENST00000504627 CYP19A1P11511 503 aaPredicted RBP23.97■■□□□ 1.43
SQSTM1-209ENST00000504627 VSIG10Q8N0Z9 540 aa23.97■■□□□ 1.43
SQSTM1-209ENST00000504627 ADAMTS7Q9UKP4 1686 aa23.97■■□□□ 1.43
SQSTM1-209ENST00000504627 USP42Q9H9J4 1324 aaKnown RBP23.96■■□□□ 1.43
SQSTM1-209ENST00000504627 ZPR1O75312 459 aa23.96■■□□□ 1.43
SQSTM1-209ENST00000504627 CICQ96RK0 1608 aaPredicted RBP23.95■■□□□ 1.43
SQSTM1-209ENST00000504627 KCPQ6ZWJ8 1503 aa23.95■■□□□ 1.43
SQSTM1-209ENST00000504627 FCHSD2O94868 740 aa23.95■■□□□ 1.42
SQSTM1-209ENST00000504627 TGFB2P61812 414 aa23.94■■□□□ 1.42
SQSTM1-209ENST00000504627 ZNF790Q6PG37 636 aa23.94■■□□□ 1.42
SQSTM1-209ENST00000504627 RTF1Q92541 710 aaKnown RBP23.94■■□□□ 1.42
SQSTM1-209ENST00000504627 C4AP0C0L4 1744 aa23.93■■□□□ 1.42
SQSTM1-209ENST00000504627 SOS1Q07889 1333 aaPredicted RBP23.93■■□□□ 1.42
SQSTM1-209ENST00000504627 STARD3NLO95772 234 aa23.93■■□□□ 1.42
SQSTM1-209ENST00000504627 FKBP8Q14318 412 aa23.93■■□□□ 1.42
SQSTM1-209ENST00000504627 ZBTB1Q9Y2K1 713 aa23.93■■□□□ 1.42
SQSTM1-209ENST00000504627 USPL1Q5W0Q7 1092 aa23.92■■□□□ 1.42
SQSTM1-209ENST00000504627 MIER1Q8N108 512 aa23.92■■□□□ 1.42
SQSTM1-209ENST00000504627 CANXP27824 592 aaKnown RBP23.91■■□□□ 1.42
SQSTM1-209ENST00000504627 ZNF496Q96IT1 587 aaPredicted RBP23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms