RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 SIPA1L3O60292 1781 aaPredicted RBP20.58■□□□□ 0.89
CPNE1-228ENST00000498814 CEMIPQ8WUJ3 1361 aa20.58■□□□□ 0.88
CPNE1-228ENST00000498814 RTF1Q92541 710 aaKnown RBP20.57■□□□□ 0.88
CPNE1-228ENST00000498814 PALLDQ8WX93 1383 aa20.56■□□□□ 0.88
CPNE1-228ENST00000498814 TMPOP42166 694 aaKnown RBP20.55■□□□□ 0.88
CPNE1-228ENST00000498814 SLC27A3Q5K4L6 730 aa20.55■□□□□ 0.88
CPNE1-228ENST00000498814 ATG3Q9NT62 314 aa20.55■□□□□ 0.88
CPNE1-228ENST00000498814 ASAP1Q9ULH1 1129 aa20.55■□□□□ 0.88
CPNE1-228ENST00000498814 PAPPAQ13219 1627 aa20.54■□□□□ 0.88
CPNE1-228ENST00000498814 CCER2I3L3R5 266 aa20.54■□□□□ 0.88
CPNE1-228ENST00000498814 TEFQ10587 303 aa20.53■□□□□ 0.88
CPNE1-228ENST00000498814 MCM10Q7L590 875 aa20.53■□□□□ 0.88
CPNE1-228ENST00000498814 RIPK4P57078 832 aa20.52■□□□□ 0.88
CPNE1-228ENST00000498814 LRRC4BQ9NT99 713 aa20.52■□□□□ 0.88
CPNE1-228ENST00000498814 TAF1LQ8IZX4 1826 aa20.52■□□□□ 0.88
CPNE1-228ENST00000498814 ZNF831Q5JPB2 1677 aa20.51■□□□□ 0.87
CPNE1-228ENST00000498814 DCTN1Q14203 1278 aa20.51■□□□□ 0.87
CPNE1-228ENST00000498814 CCNL1Q9UK58 526 aaPredicted RBP20.51■□□□□ 0.87
CPNE1-228ENST00000498814 LMOD3Q0VAK6 560 aa20.5■□□□□ 0.87
CPNE1-228ENST00000498814 UBR2Q8IWV8 1755 aa20.49■□□□□ 0.87
CPNE1-228ENST00000498814 C5P01031 1676 aa20.49■□□□□ 0.87
CPNE1-228ENST00000498814 LOC102724428A0A0B4J2F2 783 aa20.49■□□□□ 0.87
CPNE1-228ENST00000498814 APAF1O14727 1248 aa20.49■□□□□ 0.87
CPNE1-228ENST00000498814 SIK1P57059 783 aa20.49■□□□□ 0.87
CPNE1-228ENST00000498814 NBPF14Q5TI25 921 aa20.49■□□□□ 0.87
CPNE1-228ENST00000498814 RRP7AQ9Y3A4 280 aaKnown RBP20.49■□□□□ 0.87
CPNE1-228ENST00000498814 HMGB2P26583 209 aaKnown RBP20.48■□□□□ 0.87
CPNE1-228ENST00000498814 NEUROD2Q15784 382 aa20.48■□□□□ 0.87
CPNE1-228ENST00000498814 FAM9BQ8IZU0 186 aa20.48■□□□□ 0.87
CPNE1-228ENST00000498814 MIER1Q8N108 512 aa20.48■□□□□ 0.87
CPNE1-228ENST00000498814 KCNQ4P56696 695 aa20.47■□□□□ 0.87
CPNE1-228ENST00000498814 SLC39A6Q13433 755 aa20.46■□□□□ 0.87
CPNE1-228ENST00000498814 TAF7Q15545 349 aaPredicted RBP20.46■□□□□ 0.87
CPNE1-228ENST00000498814 TRIM35Q9UPQ4 493 aa20.46■□□□□ 0.87
CPNE1-228ENST00000498814 CICQ96RK0 1608 aaPredicted RBP20.45■□□□□ 0.87
CPNE1-228ENST00000498814 KCPQ6ZWJ8 1503 aa20.45■□□□□ 0.86
CPNE1-228ENST00000498814 BTBD11A6QL63 1104 aa20.45■□□□□ 0.86
CPNE1-228ENST00000498814 RBM42Q9BTD8 480 aaKnown RBP20.45■□□□□ 0.86
CPNE1-228ENST00000498814 THUMPD2Q9BTF0 503 aaKnown RBP20.45■□□□□ 0.86
CPNE1-228ENST00000498814 ANO8Q9HCE9 1232 aaPredicted RBP20.45■□□□□ 0.86
CPNE1-228ENST00000498814 PTCD1O75127 700 aaKnown RBP20.44■□□□□ 0.86
CPNE1-228ENST00000498814 ATP6V1AP38606 617 aa20.44■□□□□ 0.86
CPNE1-228ENST00000498814 ZNF790Q6PG37 636 aa20.44■□□□□ 0.86
CPNE1-228ENST00000498814 TTC5Q8N0Z6 440 aa20.44■□□□□ 0.86
CPNE1-228ENST00000498814 SLC4A9Q96Q91 983 aa20.44■□□□□ 0.86
CPNE1-228ENST00000498814 KDM3BQ7LBC6 1761 aa20.44■□□□□ 0.86
CPNE1-228ENST00000498814 STK32BQ9NY57 414 aa20.43■□□□□ 0.86
CPNE1-228ENST00000498814 COL5A3P25940 1745 aaPredicted RBP20.43■□□□□ 0.86
CPNE1-228ENST00000498814 TJP1Q07157 1748 aa20.43■□□□□ 0.86
CPNE1-228ENST00000498814 C4BP0C0L5 1744 aa20.42■□□□□ 0.86
CPNE1-228ENST00000498814 QSER1Q2KHR3 1735 aa20.42■□□□□ 0.86
CPNE1-228ENST00000498814 ITPK1Q13572 414 aa20.42■□□□□ 0.86
CPNE1-228ENST00000498814 SLC15A2Q16348 729 aa20.42■□□□□ 0.86
CPNE1-228ENST00000498814 NCBP3Q53F19 620 aaKnown RBP20.42■□□□□ 0.86
CPNE1-228ENST00000498814 AKT1S1Q96B36 256 aa20.42■□□□□ 0.86
CPNE1-228ENST00000498814 R3HDM1Q15032 1099 aaKnown RBP20.41■□□□□ 0.86
CPNE1-228ENST00000498814 ZNF827Q17R98 1081 aa20.4■□□□□ 0.86
CPNE1-228ENST00000498814 VSIG10Q8N0Z9 540 aa20.4■□□□□ 0.86
CPNE1-228ENST00000498814 TUBGCP6Q96RT7 1819 aa20.4■□□□□ 0.86
CPNE1-228ENST00000498814 KCNQ3O43525 872 aa20.39■□□□□ 0.85
CPNE1-228ENST00000498814 CCDC27Q2M243 656 aa20.39■□□□□ 0.85
CPNE1-228ENST00000498814 LINC00116Q8NCU8 138 aa20.39■□□□□ 0.85
CPNE1-228ENST00000498814 ZNF496Q96IT1 587 aaPredicted RBP20.39■□□□□ 0.85
CPNE1-228ENST00000498814 BABAM1Q9NWV8 329 aa20.39■□□□□ 0.85
CPNE1-228ENST00000498814 MIS18AQ9NYP9 233 aa20.39■□□□□ 0.85
CPNE1-228ENST00000498814 PSDA5PKW4 1024 aaPredicted RBP20.38■□□□□ 0.85
CPNE1-228ENST00000498814 FMNL2Q96PY5 1086 aa20.38■□□□□ 0.85
CPNE1-228ENST00000498814 MYH14Q7Z406 1995 aaKnown RBP20.37■□□□□ 0.85
CPNE1-228ENST00000498814 UBR3Q6ZT12 1888 aa20.37■□□□□ 0.85
CPNE1-228ENST00000498814 HEG1Q9ULI3 1381 aa20.37■□□□□ 0.85
CPNE1-228ENST00000498814 CALD1Q05682 793 aaKnown RBP20.36■□□□□ 0.85
CPNE1-228ENST00000498814 RC3H1Q5TC82 1133 aaKnown RBP20.36■□□□□ 0.85
CPNE1-228ENST00000498814 NGEFQ8N5V2 710 aa20.36■□□□□ 0.85
CPNE1-228ENST00000498814 CNTNAP4Q9C0A0 1308 aa20.35■□□□□ 0.85
CPNE1-228ENST00000498814 CHL1O00533 1208 aa20.35■□□□□ 0.85
CPNE1-228ENST00000498814 DNAJC10Q8IXB1 793 aa20.35■□□□□ 0.85
CPNE1-228ENST00000498814 TFCP2L1Q9NZI6 479 aa20.35■□□□□ 0.85
CPNE1-228ENST00000498814 CASZ1Q86V15 1759 aa20.35■□□□□ 0.85
CPNE1-228ENST00000498814 WWC1Q8IX03 1113 aa20.34■□□□□ 0.85
CPNE1-228ENST00000498814 AK7Q96M32 723 aa20.34■□□□□ 0.85
CPNE1-228ENST00000498814 TEX13AQ9BXU3 409 aaPredicted RBP20.34■□□□□ 0.85
CPNE1-228ENST00000498814 TSPYL4Q9UJ04 414 aa20.34■□□□□ 0.85
CPNE1-228ENST00000498814 SENP3-EIF4A1A0A087X0R7 540 aa20.33■□□□□ 0.85
CPNE1-228ENST00000498814 CYP19A1P11511 503 aaPredicted RBP20.33■□□□□ 0.85
CPNE1-228ENST00000498814 CFAP44Q96MT7 982 aa20.33■□□□□ 0.85
CPNE1-228ENST00000498814 SNRPA1P09661 255 aaKnown RBP20.32■□□□□ 0.84
CPNE1-228ENST00000498814 CRKLP46109 303 aaKnown RBP20.32■□□□□ 0.84
CPNE1-228ENST00000498814 EIF4A1P60842 406 aaKnown RBP20.32■□□□□ 0.84
CPNE1-228ENST00000498814 PNPLA7Q6ZV29 1317 aa20.31■□□□□ 0.84
CPNE1-228ENST00000498814 STARD3NLO95772 234 aa20.31■□□□□ 0.84
CPNE1-228ENST00000498814 ZNF853P0CG23 659 aa20.31■□□□□ 0.84
CPNE1-228ENST00000498814 FLAD1Q8NFF5 587 aa20.31■□□□□ 0.84
CPNE1-228ENST00000498814 IFT57Q9NWB7 429 aa20.31■□□□□ 0.84
CPNE1-228ENST00000498814 LAMB4A4D0S4 1761 aa20.31■□□□□ 0.84
CPNE1-228ENST00000498814 GNPATO15228 680 aa20.3■□□□□ 0.84
CPNE1-228ENST00000498814 GNAI1P63096 354 aa20.3■□□□□ 0.84
CPNE1-228ENST00000498814 INTS5Q6P9B9 1019 aaKnown RBP20.3■□□□□ 0.84
CPNE1-228ENST00000498814 CCDC87Q9NVE4 849 aa20.3■□□□□ 0.84
CPNE1-228ENST00000498814 SALL2Q9Y467 1007 aaPredicted RBP20.3■□□□□ 0.84
CPNE1-228ENST00000498814 LAS1LQ9Y4W2 734 aaKnown RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms