RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 EXOC5O00471 708 aa10.73□□□□□ -0.69
SF3A1-210ENST00000498259 MVPQ14764 893 aaKnown RBP10.73□□□□□ -0.69
SF3A1-210ENST00000498259 NKX1-1Q15270 411 aaPredicted RBP10.73□□□□□ -0.69
SF3A1-210ENST00000498259 NUTM2AQ8IVF1 878 aaPredicted RBP10.73□□□□□ -0.69
SF3A1-210ENST00000498259 MRPL50Q8N5N7 158 aaKnown RBP10.73□□□□□ -0.69
SF3A1-210ENST00000498259 LGR6Q9HBX8 967 aa10.73□□□□□ -0.69
SF3A1-210ENST00000498259 PARP4Q9UKK3 1724 aaKnown RBP10.72□□□□□ -0.69
SF3A1-210ENST00000498259 TSPYL6Q8N831 410 aa10.72□□□□□ -0.69
SF3A1-210ENST00000498259 NGLY1Q96IV0 654 aa10.72□□□□□ -0.69
SF3A1-210ENST00000498259 MIS18AQ9NYP9 233 aa10.72□□□□□ -0.69
SF3A1-210ENST00000498259 USP35Q9P2H5 1018 aa10.72□□□□□ -0.69
SF3A1-210ENST00000498259 MEGF6O75095 1541 aa10.72□□□□□ -0.69
SF3A1-210ENST00000498259 LRRC37A3O60309 1634 aa10.71□□□□□ -0.69
SF3A1-210ENST00000498259 SLC4A2P04920 1241 aa10.71□□□□□ -0.69
SF3A1-210ENST00000498259 RGPD2P0DJD1 1756 aa10.71□□□□□ -0.69
SF3A1-210ENST00000498259 TRIM27P14373 513 aa10.71□□□□□ -0.69
SF3A1-210ENST00000498259 EIF4A1P60842 406 aaKnown RBP10.71□□□□□ -0.69
SF3A1-210ENST00000498259 HDGFL1Q5TGJ6 251 aa10.71□□□□□ -0.69
SF3A1-210ENST00000498259 B4GALNT3Q6L9W6 998 aa10.71□□□□□ -0.69
SF3A1-210ENST00000498259 CLUAP1Q96AJ1 413 aa10.71□□□□□ -0.69
SF3A1-210ENST00000498259 CYP27B1O15528 508 aa10.7□□□□□ -0.7
SF3A1-210ENST00000498259 C20orf194Q5TEA3 1177 aa10.7□□□□□ -0.7
SF3A1-210ENST00000498259 MEX3CQ5U5Q3 659 aaKnown RBP10.7□□□□□ -0.7
SF3A1-210ENST00000498259 ZNF790Q6PG37 636 aa10.7□□□□□ -0.7
SF3A1-210ENST00000498259 BARGINQ6ZT62 677 aa10.7□□□□□ -0.7
SF3A1-210ENST00000498259 CENPQQ7L2Z9 268 aaPredicted RBP10.7□□□□□ -0.7
SF3A1-210ENST00000498259 UNC5CLQ8IV45 518 aa10.7□□□□□ -0.7
SF3A1-210ENST00000498259 ITPRIPQ8IWB1 547 aa10.7□□□□□ -0.7
SF3A1-210ENST00000498259 NFATC2IPQ8NCF5 419 aa10.7□□□□□ -0.7
SF3A1-210ENST00000498259 DDX54Q8TDD1 881 aaKnown RBP10.7□□□□□ -0.7
SF3A1-210ENST00000498259 PANK1Q8TE04 598 aa10.7□□□□□ -0.7
SF3A1-210ENST00000498259 FMNL2Q96PY5 1086 aa10.7□□□□□ -0.7
SF3A1-210ENST00000498259 DBF4Q9UBU7 674 aaPredicted RBP10.7□□□□□ -0.7
SF3A1-210ENST00000498259 HDAC5Q9UQL6 1122 aa10.7□□□□□ -0.7
SF3A1-210ENST00000498259 COG6Q9Y2V7 657 aa10.7□□□□□ -0.7
SF3A1-210ENST00000498259 CCDC9Q9Y3X0 531 aaKnown RBP10.7□□□□□ -0.7
SF3A1-210ENST00000498259 SPATA31A1Q5TZJ5 1347 aa10.69□□□□□ -0.7
SF3A1-210ENST00000498259 CCT4P50991 539 aaKnown RBP10.69□□□□□ -0.7
SF3A1-210ENST00000498259 TEX13AQ9BXU3 409 aaPredicted RBP10.69□□□□□ -0.7
SF3A1-210ENST00000498259 RWDD1Q9H446 243 aaPredicted RBP10.69□□□□□ -0.7
SF3A1-210ENST00000498259 PKD1L3Q7Z443 1732 aa10.68□□□□□ -0.7
SF3A1-210ENST00000498259 DDX58O95786 925 aaKnown RBP10.68□□□□□ -0.7
SF3A1-210ENST00000498259 SNRPA1P09661 255 aaKnown RBP10.68□□□□□ -0.7
SF3A1-210ENST00000498259 DDB1Q16531 1140 aa10.68□□□□□ -0.7
SF3A1-210ENST00000498259 FNBP4Q8N3X1 1017 aaPredicted RBP10.68□□□□□ -0.7
SF3A1-210ENST00000498259 C8orf37Q96NL8 207 aa10.68□□□□□ -0.7
SF3A1-210ENST00000498259 HYPKQ9NX55 129 aa10.68□□□□□ -0.7
SF3A1-210ENST00000498259 TMOD3Q9NYL9 352 aa10.68□□□□□ -0.7
SF3A1-210ENST00000498259 NWD2Q9ULI1 1742 aa10.67□□□□□ -0.7
SF3A1-210ENST00000498259 SPATA31A5Q5VU36 1347 aa10.67□□□□□ -0.7
SF3A1-210ENST00000498259 SPATA31A7Q8IWB4 1347 aa10.67□□□□□ -0.7
SF3A1-210ENST00000498259 GIGYF1O75420 1035 aaPredicted RBP10.67□□□□□ -0.7
SF3A1-210ENST00000498259 VPS72Q15906 364 aa10.67□□□□□ -0.7
SF3A1-210ENST00000498259 ADAMTS7Q9UKP4 1686 aa10.66□□□□□ -0.7
SF3A1-210ENST00000498259 ABCC4O15439 1325 aa10.66□□□□□ -0.7
SF3A1-210ENST00000498259 EIF2S2P20042 333 aaKnown RBP10.66□□□□□ -0.7
SF3A1-210ENST00000498259 FKBP5Q13451 457 aaPredicted RBP10.66□□□□□ -0.7
SF3A1-210ENST00000498259 INTS3Q68E01 1043 aaKnown RBP10.66□□□□□ -0.7
SF3A1-210ENST00000498259 TMEM57Q8N5G2 664 aa10.66□□□□□ -0.7
SF3A1-210ENST00000498259 USP21Q9UK80 565 aa10.66□□□□□ -0.7
SF3A1-210ENST00000498259 SLIT2O94813 1529 aa10.66□□□□□ -0.7
SF3A1-210ENST00000498259 MRC1P22897 1456 aa10.66□□□□□ -0.7
SF3A1-210ENST00000498259 KDM6AO15550 1401 aaPredicted RBP10.66□□□□□ -0.7
SF3A1-210ENST00000498259 ERBB4Q15303 1308 aa10.65□□□□□ -0.7
SF3A1-210ENST00000498259 FLIIQ13045 1269 aa10.65□□□□□ -0.7
SF3A1-210ENST00000498259 KRT24Q2M2I5 525 aa10.65□□□□□ -0.7
SF3A1-210ENST00000498259 HEG1Q9ULI3 1381 aa10.65□□□□□ -0.71
SF3A1-210ENST00000498259 TCERG1O14776 1098 aaKnown RBP10.64□□□□□ -0.71
SF3A1-210ENST00000498259 GNAI3P08754 354 aa10.64□□□□□ -0.71
SF3A1-210ENST00000498259 RLBP1P12271 317 aa10.64□□□□□ -0.71
SF3A1-210ENST00000498259 HMGB2P26583 209 aaKnown RBP10.64□□□□□ -0.71
SF3A1-210ENST00000498259 HSPA1LP34931 641 aa10.64□□□□□ -0.71
SF3A1-210ENST00000498259 VSIG10Q8N0Z9 540 aa10.64□□□□□ -0.71
SF3A1-210ENST00000498259 DDX21Q9NR30 783 aaKnown RBP eCLIP10.64□□□□□ -0.71
SF3A1-210ENST00000498259 ZBTB40Q9NUA8 1239 aa10.64□□□□□ -0.71
SF3A1-210ENST00000498259 DISP2A7MBM2 1401 aa10.64□□□□□ -0.71
SF3A1-210ENST00000498259 SCN11AQ9UI33 1791 aa10.64□□□□□ -0.71
SF3A1-210ENST00000498259 PLCH1Q4KWH8 1693 aa10.63□□□□□ -0.71
SF3A1-210ENST00000498259 CACNA1FO60840 1977 aa10.63□□□□□ -0.71
SF3A1-210ENST00000498259 ZBTB7BO15156 539 aaPredicted RBP10.63□□□□□ -0.71
SF3A1-210ENST00000498259 NPM2Q86SE8 214 aaKnown RBP10.63□□□□□ -0.71
SF3A1-210ENST00000498259 TNS2Q63HR2 1409 aa10.63□□□□□ -0.71
SF3A1-210ENST00000498259 KDM3BQ7LBC6 1761 aa10.62□□□□□ -0.71
SF3A1-210ENST00000498259 HMMRO75330 724 aa10.62□□□□□ -0.71
SF3A1-210ENST00000498259 STARD3NLO95772 234 aa10.62□□□□□ -0.71
SF3A1-210ENST00000498259 NEXNQ0ZGT2 675 aa10.62□□□□□ -0.71
SF3A1-210ENST00000498259 HDAC1Q13547 482 aaPredicted RBP10.62□□□□□ -0.71
SF3A1-210ENST00000498259 SLC4A10Q6U841 1118 aa10.62□□□□□ -0.71
SF3A1-210ENST00000498259 ZNF496Q96IT1 587 aaPredicted RBP10.62□□□□□ -0.71
SF3A1-210ENST00000498259 CHPF2Q9P2E5 772 aa10.62□□□□□ -0.71
SF3A1-210ENST00000498259 ZBTB47Q9UFB7 747 aaPredicted RBP10.62□□□□□ -0.71
SF3A1-210ENST00000498259 TRPC5Q9UL62 973 aaPredicted RBP10.62□□□□□ -0.71
SF3A1-210ENST00000498259 A0A0G2JS52 829 aa10.61□□□□□ -0.71
SF3A1-210ENST00000498259 KCNQ3O43525 872 aa10.61□□□□□ -0.71
SF3A1-210ENST00000498259 MYT1Q01538 1121 aa10.61□□□□□ -0.71
SF3A1-210ENST00000498259 SLC39A6Q13433 755 aa10.61□□□□□ -0.71
SF3A1-210ENST00000498259 RPAP2Q8IXW5 612 aaPredicted RBP10.61□□□□□ -0.71
SF3A1-210ENST00000498259 NECTIN2Q92692 538 aa10.61□□□□□ -0.71
SF3A1-210ENST00000498259 SMARCC1Q92922 1105 aaPredicted RBP10.61□□□□□ -0.71
SF3A1-210ENST00000498259 PXDNLA1KZ92 1463 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms