RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 RIPK4P57078 832 aa25.68■■□□□ 1.7
HDAC4-212ENST00000495497 NEUROD2Q15784 382 aa25.68■■□□□ 1.7
HDAC4-212ENST00000495497 RREB1Q92766 1687 aa25.68■■□□□ 1.7
HDAC4-212ENST00000495497 ADAMTS7Q9UKP4 1686 aa25.68■■□□□ 1.7
HDAC4-212ENST00000495497 RGPD3A6NKT7 1758 aaPredicted RBP25.67■■□□□ 1.7
HDAC4-212ENST00000495497 RGPD4Q7Z3J3 1758 aa25.67■■□□□ 1.7
HDAC4-212ENST00000495497 CCNL1Q9UK58 526 aaPredicted RBP25.67■■□□□ 1.7
HDAC4-212ENST00000495497 CEMIPQ8WUJ3 1361 aa25.67■■□□□ 1.7
HDAC4-212ENST00000495497 MRC1P22897 1456 aa25.66■■□□□ 1.7
HDAC4-212ENST00000495497 SENP3-EIF4A1A0A087X0R7 540 aa25.66■■□□□ 1.7
HDAC4-212ENST00000495497 HTATSF1O43719 755 aaKnown RBP25.66■■□□□ 1.7
HDAC4-212ENST00000495497 TEFQ10587 303 aa25.66■■□□□ 1.7
HDAC4-212ENST00000495497 SLC39A6Q13433 755 aa25.66■■□□□ 1.7
HDAC4-212ENST00000495497 FAM9BQ8IZU0 186 aa25.66■■□□□ 1.7
HDAC4-212ENST00000495497 MIER1Q8N108 512 aa25.65■■□□□ 1.7
HDAC4-212ENST00000495497 THUMPD2Q9BTF0 503 aaKnown RBP25.65■■□□□ 1.7
HDAC4-212ENST00000495497 NUP188Q5SRE5 1749 aa25.65■■□□□ 1.7
HDAC4-212ENST00000495497 SLC27A3Q5K4L6 730 aa25.64■■□□□ 1.7
HDAC4-212ENST00000495497 RBM42Q9BTD8 480 aaKnown RBP25.64■■□□□ 1.7
HDAC4-212ENST00000495497 ANO8Q9HCE9 1232 aaPredicted RBP25.64■■□□□ 1.7
HDAC4-212ENST00000495497 APAF1O14727 1248 aa25.63■■□□□ 1.69
HDAC4-212ENST00000495497 LOC102724428A0A0B4J2F2 783 aa25.62■■□□□ 1.69
HDAC4-212ENST00000495497 PTCD1O75127 700 aaKnown RBP25.62■■□□□ 1.69
HDAC4-212ENST00000495497 SIK1P57059 783 aa25.62■■□□□ 1.69
HDAC4-212ENST00000495497 VIRMAQ69YN4 1812 aaKnown RBP25.62■■□□□ 1.69
HDAC4-212ENST00000495497 LY75O60449 1722 aa25.61■■□□□ 1.69
HDAC4-212ENST00000495497 PSDA5PKW4 1024 aaPredicted RBP25.61■■□□□ 1.69
HDAC4-212ENST00000495497 NBPF14Q5TI25 921 aa25.61■■□□□ 1.69
HDAC4-212ENST00000495497 SLC4A9Q96Q91 983 aa25.61■■□□□ 1.69
HDAC4-212ENST00000495497 CCER2I3L3R5 266 aa25.6■■□□□ 1.69
HDAC4-212ENST00000495497 R3HDM1Q15032 1099 aaKnown RBP25.6■■□□□ 1.69
HDAC4-212ENST00000495497 DLG5Q8TDM6 1919 aa25.6■■□□□ 1.69
HDAC4-212ENST00000495497 ATP6V1AP38606 617 aa25.59■■□□□ 1.69
HDAC4-212ENST00000495497 TRIM35Q9UPQ4 493 aa25.59■■□□□ 1.69
HDAC4-212ENST00000495497 BTBD11A6QL63 1104 aa25.58■■□□□ 1.69
HDAC4-212ENST00000495497 KCNQ3O43525 872 aa25.58■■□□□ 1.69
HDAC4-212ENST00000495497 ITPK1Q13572 414 aa25.58■■□□□ 1.69
HDAC4-212ENST00000495497 ZNF827Q17R98 1081 aa25.58■■□□□ 1.69
HDAC4-212ENST00000495497 STK32BQ9NY57 414 aa25.57■■□□□ 1.68
HDAC4-212ENST00000495497 MIS18AQ9NYP9 233 aa25.57■■□□□ 1.68
HDAC4-212ENST00000495497 LMOD3Q0VAK6 560 aa25.55■■□□□ 1.68
HDAC4-212ENST00000495497 TAF7Q15545 349 aaPredicted RBP25.55■■□□□ 1.68
HDAC4-212ENST00000495497 SLC15A2Q16348 729 aa25.55■■□□□ 1.68
HDAC4-212ENST00000495497 ZNF790Q6PG37 636 aa25.55■■□□□ 1.68
HDAC4-212ENST00000495497 LINC00116Q8NCU8 138 aa25.55■■□□□ 1.68
HDAC4-212ENST00000495497 PAPPAQ13219 1627 aa25.55■■□□□ 1.68
HDAC4-212ENST00000495497 TTC5Q8N0Z6 440 aa25.54■■□□□ 1.68
HDAC4-212ENST00000495497 AKT1S1Q96B36 256 aa25.54■■□□□ 1.68
HDAC4-212ENST00000495497 SIPA1L3O60292 1781 aaPredicted RBP25.54■■□□□ 1.68
HDAC4-212ENST00000495497 KCPQ6ZWJ8 1503 aa25.52■■□□□ 1.68
HDAC4-212ENST00000495497 ZNF496Q96IT1 587 aaPredicted RBP25.51■■□□□ 1.67
HDAC4-212ENST00000495497 SALL2Q9Y467 1007 aaPredicted RBP25.5■■□□□ 1.67
HDAC4-212ENST00000495497 DNAJC10Q8IXB1 793 aa25.49■■□□□ 1.67
HDAC4-212ENST00000495497 PDGFDQ9GZP0 370 aaPredicted RBP25.49■■□□□ 1.67
HDAC4-212ENST00000495497 SMIM5Q71RC9 77 aa25.48■■□□□ 1.67
HDAC4-212ENST00000495497 TFCP2L1Q9NZI6 479 aa25.48■■□□□ 1.67
HDAC4-212ENST00000495497 C5P01031 1676 aa25.48■■□□□ 1.67
HDAC4-212ENST00000495497 LAS1LQ9Y4W2 734 aaKnown RBP25.47■■□□□ 1.67
HDAC4-212ENST00000495497 AMIGO3Q86WK7 504 aa25.46■■□□□ 1.67
HDAC4-212ENST00000495497 AK7Q96M32 723 aa25.46■■□□□ 1.67
HDAC4-212ENST00000495497 FMNL2Q96PY5 1086 aa25.46■■□□□ 1.67
HDAC4-212ENST00000495497 TAF1LQ8IZX4 1826 aa25.46■■□□□ 1.67
HDAC4-212ENST00000495497 HEG1Q9ULI3 1381 aa25.45■■□□□ 1.67
HDAC4-212ENST00000495497 TSPYL4Q9UJ04 414 aa25.45■■□□□ 1.66
HDAC4-212ENST00000495497 C4BP0C0L5 1744 aa25.45■■□□□ 1.66
HDAC4-212ENST00000495497 UBR2Q8IWV8 1755 aa25.44■■□□□ 1.66
HDAC4-212ENST00000495497 PNPLA7Q6ZV29 1317 aa25.44■■□□□ 1.66
HDAC4-212ENST00000495497 PRAMEF22A3QJZ6 481 aa25.44■■□□□ 1.66
HDAC4-212ENST00000495497 VSIG10Q8N0Z9 540 aa25.44■■□□□ 1.66
HDAC4-212ENST00000495497 TJP1Q07157 1748 aa25.43■■□□□ 1.66
HDAC4-212ENST00000495497 CRKLP46109 303 aaKnown RBP25.42■■□□□ 1.66
HDAC4-212ENST00000495497 ZNF831Q5JPB2 1677 aa25.42■■□□□ 1.66
HDAC4-212ENST00000495497 GNPATO15228 680 aa25.41■■□□□ 1.66
HDAC4-212ENST00000495497 PHF14O94880 888 aa25.41■■□□□ 1.66
HDAC4-212ENST00000495497 CYP19A1P11511 503 aaPredicted RBP25.41■■□□□ 1.66
HDAC4-212ENST00000495497 HMGB2P26583 209 aaKnown RBP25.41■■□□□ 1.66
HDAC4-212ENST00000495497 EIF4A1P60842 406 aaKnown RBP25.41■■□□□ 1.66
HDAC4-212ENST00000495497 WWC1Q8IX03 1113 aa25.41■■□□□ 1.66
HDAC4-212ENST00000495497 CHL1O00533 1208 aa25.4■■□□□ 1.66
HDAC4-212ENST00000495497 CCDC27Q2M243 656 aa25.4■■□□□ 1.66
HDAC4-212ENST00000495497 RC3H1Q5TC82 1133 aaKnown RBP25.4■■□□□ 1.66
HDAC4-212ENST00000495497 CNTNAP4Q9C0A0 1308 aa25.39■■□□□ 1.66
HDAC4-212ENST00000495497 INTS5Q6P9B9 1019 aaKnown RBP25.39■■□□□ 1.66
HDAC4-212ENST00000495497 COL23A1Q86Y22 540 aaPredicted RBP25.39■■□□□ 1.66
HDAC4-212ENST00000495497 BABAM1Q9NWV8 329 aa25.39■■□□□ 1.66
HDAC4-212ENST00000495497 USP16Q9Y5T5 823 aa25.39■■□□□ 1.66
HDAC4-212ENST00000495497 KDM3BQ7LBC6 1761 aa25.39■■□□□ 1.65
HDAC4-212ENST00000495497 COL5A3P25940 1745 aaPredicted RBP25.38■■□□□ 1.65
HDAC4-212ENST00000495497 MSH5O43196 834 aa25.38■■□□□ 1.65
HDAC4-212ENST00000495497 SNRPA1P09661 255 aaKnown RBP25.38■■□□□ 1.65
HDAC4-212ENST00000495497 CFAP44Q96MT7 982 aa25.38■■□□□ 1.65
HDAC4-212ENST00000495497 TUBGCP6Q96RT7 1819 aa25.37■■□□□ 1.65
HDAC4-212ENST00000495497 CCDC87Q9NVE4 849 aa25.37■■□□□ 1.65
HDAC4-212ENST00000495497 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.36■■□□□ 1.65
HDAC4-212ENST00000495497 ZBTB7AO95365 584 aa25.36■■□□□ 1.65
HDAC4-212ENST00000495497 ZNF853P0CG23 659 aa25.36■■□□□ 1.65
HDAC4-212ENST00000495497 NCBP3Q53F19 620 aaKnown RBP25.36■■□□□ 1.65
HDAC4-212ENST00000495497 TEX13AQ9BXU3 409 aaPredicted RBP25.36■■□□□ 1.65
HDAC4-212ENST00000495497 MBIPQ9NS73 344 aa25.36■■□□□ 1.65
HDAC4-212ENST00000495497 ZBTB1Q9Y2K1 713 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms