RNA–Protein interactions for RNA: ENST00000495484.5

PCDH15-223, Transcript of protocadherin related 15, human

TSL 5 BASIC

Gene PCDH15, Length 1,896 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH15-223	ENST00000495484	TWISTNB	Q3B726	338 aa	Predicted RBP	11.89	□□□□□ -0.51
PCDH15-223	ENST00000495484	ALDH1L2	Q3SY69	923 aa		11.89	□□□□□ -0.51
PCDH15-223	ENST00000495484	NFATC2IP	Q8NCF5	419 aa		11.89	□□□□□ -0.51
PCDH15-223	ENST00000495484	VAMP4	O75379	141 aa		11.88	□□□□□ -0.51
PCDH15-223	ENST00000495484	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.88	□□□□□ -0.51
PCDH15-223	ENST00000495484		A0A0G2JS52	829 aa		11.87	□□□□□ -0.51
PCDH15-223	ENST00000495484	MYT1	Q01538	1121 aa		11.87	□□□□□ -0.51
PCDH15-223	ENST00000495484	C8orf58	Q8NAV2	365 aa		11.87	□□□□□ -0.51
PCDH15-223	ENST00000495484	LRRC37A3	O60309	1634 aa		11.87	□□□□□ -0.51
PCDH15-223	ENST00000495484	HOXB7	P09629	217 aa		11.87	□□□□□ -0.51
PCDH15-223	ENST00000495484	RRP1	P56182	461 aa	Known RBP	11.87	□□□□□ -0.51
PCDH15-223	ENST00000495484	EIF4A1	P60842	406 aa	Known RBP	11.87	□□□□□ -0.51
PCDH15-223	ENST00000495484	TTC5	Q8N0Z6	440 aa		11.87	□□□□□ -0.51
PCDH15-223	ENST00000495484	ELL2	O00472	640 aa	Predicted RBP	11.86	□□□□□ -0.51
PCDH15-223	ENST00000495484	ZNF790	Q6PG37	636 aa		11.86	□□□□□ -0.51
PCDH15-223	ENST00000495484	TMOD3	Q9NYL9	352 aa		11.86	□□□□□ -0.51
PCDH15-223	ENST00000495484	ADAMTS7	Q9UKP4	1686 aa		11.86	□□□□□ -0.51
PCDH15-223	ENST00000495484	MRC1	P22897	1456 aa		11.86	□□□□□ -0.51
PCDH15-223	ENST00000495484	BRPF1	P55201	1214 aa	Predicted RBP	11.85	□□□□□ -0.51
PCDH15-223	ENST00000495484	TSPYL6	Q8N831	410 aa		11.85	□□□□□ -0.51
PCDH15-223	ENST00000495484	SMC4	Q9NTJ3	1288 aa		11.85	□□□□□ -0.51
PCDH15-223	ENST00000495484	MARCH10	Q8NA82	808 aa	Predicted RBP	11.85	□□□□□ -0.51
PCDH15-223	ENST00000495484	IPO8	O15397	1037 aa	Known RBP	11.84	□□□□□ -0.51
PCDH15-223	ENST00000495484	BCAR3	O75815	825 aa		11.84	□□□□□ -0.51
PCDH15-223	ENST00000495484	MS4A1	P11836	297 aa		11.84	□□□□□ -0.51
PCDH15-223	ENST00000495484	RBM6	P78332	1123 aa	Known RBP	11.84	□□□□□ -0.51
PCDH15-223	ENST00000495484	SSH1	Q8WYL5	1049 aa		11.84	□□□□□ -0.51
PCDH15-223	ENST00000495484	KIF16B	Q96L93	1317 aa		11.84	□□□□□ -0.51
PCDH15-223	ENST00000495484	CANX	P27824	592 aa	Known RBP	11.83	□□□□□ -0.52
PCDH15-223	ENST00000495484	CCDC30	Q5VVM6	783 aa		11.83	□□□□□ -0.52
PCDH15-223	ENST00000495484	ERICH6B	Q5W0A0	696 aa		11.83	□□□□□ -0.52
PCDH15-223	ENST00000495484	FMNL2	Q96PY5	1086 aa		11.83	□□□□□ -0.52
PCDH15-223	ENST00000495484	KRT24	Q2M2I5	525 aa		11.83	□□□□□ -0.52
PCDH15-223	ENST00000495484	SEPT12	Q8IYM1	358 aa		11.83	□□□□□ -0.52
PCDH15-223	ENST00000495484	STK31	Q9BXU1	1019 aa		11.83	□□□□□ -0.52
PCDH15-223	ENST00000495484	KCNQ3	O43525	872 aa		11.82	□□□□□ -0.52
PCDH15-223	ENST00000495484	GIGYF1	O75420	1035 aa	Predicted RBP	11.82	□□□□□ -0.52
PCDH15-223	ENST00000495484	SNRPA1	P09661	255 aa	Known RBP	11.82	□□□□□ -0.52
PCDH15-223	ENST00000495484	SLC39A6	Q13433	755 aa		11.82	□□□□□ -0.52
PCDH15-223	ENST00000495484	GTF3C3	Q9Y5Q9	886 aa		11.82	□□□□□ -0.52
PCDH15-223	ENST00000495484	HEG1	Q9ULI3	1381 aa		11.82	□□□□□ -0.52
PCDH15-223	ENST00000495484	PRIM1	P49642	420 aa	Known RBP	11.81	□□□□□ -0.52
PCDH15-223	ENST00000495484	PDE3A	Q14432	1141 aa		11.81	□□□□□ -0.52
PCDH15-223	ENST00000495484	PIGB	Q92521	554 aa		11.81	□□□□□ -0.52
PCDH15-223	ENST00000495484	ARHGAP45	Q92619	1136 aa		11.81	□□□□□ -0.52
PCDH15-223	ENST00000495484	FRAT1	Q92837	279 aa	Predicted RBP	11.81	□□□□□ -0.52
PCDH15-223	ENST00000495484	SCN11A	Q9UI33	1791 aa		11.81	□□□□□ -0.52
PCDH15-223	ENST00000495484	GLI3	P10071	1580 aa		11.81	□□□□□ -0.52
PCDH15-223	ENST00000495484	FKBP8	Q14318	412 aa		11.8	□□□□□ -0.52
PCDH15-223	ENST00000495484	HDGFL1	Q5TGJ6	251 aa		11.8	□□□□□ -0.52
PCDH15-223	ENST00000495484	ZKSCAN2	Q63HK3	967 aa		11.8	□□□□□ -0.52
PCDH15-223	ENST00000495484	MRPL50	Q8N5N7	158 aa	Known RBP	11.8	□□□□□ -0.52
PCDH15-223	ENST00000495484	SYTL4	Q96C24	671 aa	Predicted RBP	11.8	□□□□□ -0.52
PCDH15-223	ENST00000495484	BCL2L13	Q9BXK5	485 aa		11.8	□□□□□ -0.52
PCDH15-223	ENST00000495484	BCL9	O00512	1426 aa		11.8	□□□□□ -0.52
PCDH15-223	ENST00000495484	WNK3	Q9BYP7	1800 aa		11.8	□□□□□ -0.52
PCDH15-223	ENST00000495484	RXRB	P28702	533 aa		11.8	□□□□□ -0.52
PCDH15-223	ENST00000495484	ZNF496	Q96IT1	587 aa	Predicted RBP	11.8	□□□□□ -0.52
PCDH15-223	ENST00000495484	SHANK3	Q9BYB0	1731 aa		11.8	□□□□□ -0.52
PCDH15-223	ENST00000495484	PLIN1	O60240	522 aa		11.79	□□□□□ -0.52
PCDH15-223	ENST00000495484	SLC4A2	P04920	1241 aa		11.79	□□□□□ -0.52
PCDH15-223	ENST00000495484	VSIG10	Q8N0Z9	540 aa		11.79	□□□□□ -0.52
PCDH15-223	ENST00000495484	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.79	□□□□□ -0.52
PCDH15-223	ENST00000495484	NOB1	Q9ULX3	412 aa	Known RBP	11.79	□□□□□ -0.52
PCDH15-223	ENST00000495484	THSD7A	Q9UPZ6	1657 aa		11.79	□□□□□ -0.52
PCDH15-223	ENST00000495484	EIF2S2	P20042	333 aa	Known RBP	11.78	□□□□□ -0.52
PCDH15-223	ENST00000495484	ATF7IP	Q6VMQ6	1270 aa		11.78	□□□□□ -0.52
PCDH15-223	ENST00000495484	SMARCC1	Q92922	1105 aa	Predicted RBP	11.78	□□□□□ -0.52
PCDH15-223	ENST00000495484	DBF4	Q9UBU7	674 aa	Predicted RBP	11.78	□□□□□ -0.52
PCDH15-223	ENST00000495484	PTPRC	P08575	1304 aa		11.78	□□□□□ -0.52
PCDH15-223	ENST00000495484	KRT27	Q7Z3Y8	459 aa		11.78	□□□□□ -0.52
PCDH15-223	ENST00000495484	API5	Q9BZZ5	524 aa	Known RBP	11.78	□□□□□ -0.52
PCDH15-223	ENST00000495484	ATG3	Q9NT62	314 aa		11.78	□□□□□ -0.52
PCDH15-223	ENST00000495484	KDM3B	Q7LBC6	1761 aa		11.77	□□□□□ -0.52
PCDH15-223	ENST00000495484	FTSJ3	Q8IY81	847 aa	Known RBP	11.77	□□□□□ -0.53
PCDH15-223	ENST00000495484	ACSBG1	Q96GR2	724 aa		11.77	□□□□□ -0.53
PCDH15-223	ENST00000495484	ASAP1	Q9ULH1	1129 aa		11.77	□□□□□ -0.53
PCDH15-223	ENST00000495484	SIPA1L3	O60292	1781 aa	Predicted RBP	11.77	□□□□□ -0.53
PCDH15-223	ENST00000495484	TCERG1	O14776	1098 aa	Known RBP	11.76	□□□□□ -0.53
PCDH15-223	ENST00000495484	PTCD1	O75127	700 aa	Known RBP	11.76	□□□□□ -0.53
PCDH15-223	ENST00000495484	FAM196A	Q6ZSG2	479 aa		11.76	□□□□□ -0.53
PCDH15-223	ENST00000495484	DZIP1L	Q8IYY4	767 aa	Known RBP	11.76	□□□□□ -0.53
PCDH15-223	ENST00000495484	ERBB4	Q15303	1308 aa		11.76	□□□□□ -0.53
PCDH15-223	ENST00000495484	IRX6	P78412	446 aa	Predicted RBP	11.76	□□□□□ -0.53
PCDH15-223	ENST00000495484	HYPK	Q9NX55	129 aa		11.76	□□□□□ -0.53
PCDH15-223	ENST00000495484	STARD3NL	O95772	234 aa		11.75	□□□□□ -0.53
PCDH15-223	ENST00000495484	TRIM27	P14373	513 aa		11.75	□□□□□ -0.53
PCDH15-223	ENST00000495484	NECTIN2	Q92692	538 aa		11.75	□□□□□ -0.53
PCDH15-223	ENST00000495484	RBM42	Q9BTD8	480 aa	Known RBP	11.75	□□□□□ -0.53
PCDH15-223	ENST00000495484	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.75	□□□□□ -0.53
PCDH15-223	ENST00000495484	AAMP	Q13685	434 aa		11.74	□□□□□ -0.53
PCDH15-223	ENST00000495484	CHMP4B	Q9H444	224 aa	Known RBP	11.74	□□□□□ -0.53
PCDH15-223	ENST00000495484	CHPF2	Q9P2E5	772 aa		11.74	□□□□□ -0.53
PCDH15-223	ENST00000495484	RGS17	Q9UGC6	210 aa	Predicted RBP	11.74	□□□□□ -0.53
PCDH15-223	ENST00000495484	KCNQ2	O43526	872 aa		11.74	□□□□□ -0.53
PCDH15-223	ENST00000495484	FLII	Q13045	1269 aa		11.74	□□□□□ -0.53
PCDH15-223	ENST00000495484	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.74	□□□□□ -0.53
PCDH15-223	ENST00000495484	USP16	Q9Y5T5	823 aa		11.74	□□□□□ -0.53
PCDH15-223	ENST00000495484	PRAMEF22	A3QJZ6	481 aa		11.73	□□□□□ -0.53
PCDH15-223	ENST00000495484	C20orf194	Q5TEA3	1177 aa		11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms