RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 TFCP2L1Q9NZI6 479 aa21.18■□□□□ 0.98
LIME1-209ENST00000494776 MAP3K5Q99683 1374 aa21.18■□□□□ 0.98
LIME1-209ENST00000494776 AKT1S1Q96B36 256 aa21.17■□□□□ 0.98
LIME1-209ENST00000494776 PAPPAQ13219 1627 aa21.16■□□□□ 0.98
LIME1-209ENST00000494776 ATP6V1AP38606 617 aa21.16■□□□□ 0.98
LIME1-209ENST00000494776 RTF1Q92541 710 aaKnown RBP21.15■□□□□ 0.98
LIME1-209ENST00000494776 SCN11AQ9UI33 1791 aa21.15■□□□□ 0.98
LIME1-209ENST00000494776 MAPK8IP3Q9UPT6 1336 aa21.14■□□□□ 0.97
LIME1-209ENST00000494776 TEFQ10587 303 aa21.14■□□□□ 0.97
LIME1-209ENST00000494776 WDR43Q15061 677 aaKnown RBP eCLIP21.14■□□□□ 0.97
LIME1-209ENST00000494776 ANP32CO43423 234 aa21.13■□□□□ 0.97
LIME1-209ENST00000494776 PTCD1O75127 700 aaKnown RBP21.13■□□□□ 0.97
LIME1-209ENST00000494776 PDGFDQ9GZP0 370 aaPredicted RBP21.13■□□□□ 0.97
LIME1-209ENST00000494776 SPON1Q9HCB6 807 aa21.13■□□□□ 0.97
LIME1-209ENST00000494776 ZBTB7AO95365 584 aa21.12■□□□□ 0.97
LIME1-209ENST00000494776 IL17REQ8NFR9 667 aa21.12■□□□□ 0.97
LIME1-209ENST00000494776 AK7Q96M32 723 aa21.12■□□□□ 0.97
LIME1-209ENST00000494776 MSH5O43196 834 aa21.11■□□□□ 0.97
LIME1-209ENST00000494776 C5P01031 1676 aa21.11■□□□□ 0.97
LIME1-209ENST00000494776 ITPK1Q13572 414 aa21.1■□□□□ 0.97
LIME1-209ENST00000494776 LINC00116Q8NCU8 138 aa21.1■□□□□ 0.97
LIME1-209ENST00000494776 PLEKHF1Q96S99 279 aa21.1■□□□□ 0.97
LIME1-209ENST00000494776 MRC1P22897 1456 aa21.09■□□□□ 0.97
LIME1-209ENST00000494776 SLC39A6Q13433 755 aa21.09■□□□□ 0.97
LIME1-209ENST00000494776 TTC5Q8N0Z6 440 aa21.09■□□□□ 0.97
LIME1-209ENST00000494776 ATF5Q9Y2D1 282 aaPredicted RBP21.09■□□□□ 0.97
LIME1-209ENST00000494776 PNPLA7Q6ZV29 1317 aa21.08■□□□□ 0.97
LIME1-209ENST00000494776 HTATSF1O43719 755 aaKnown RBP21.08■□□□□ 0.97
LIME1-209ENST00000494776 MCM10Q7L590 875 aa21.08■□□□□ 0.97
LIME1-209ENST00000494776 PPP1R1BQ9UD71 204 aaPredicted RBP21.08■□□□□ 0.97
LIME1-209ENST00000494776 VIRMAQ69YN4 1812 aaKnown RBP21.07■□□□□ 0.96
LIME1-209ENST00000494776 FLAD1Q8NFF5 587 aa21.07■□□□□ 0.96
LIME1-209ENST00000494776 SLC4A9Q96Q91 983 aa21.07■□□□□ 0.96
LIME1-209ENST00000494776 MTFR1LQ9H019 292 aa21.07■□□□□ 0.96
LIME1-209ENST00000494776 ADAMTS7Q9UKP4 1686 aa21.07■□□□□ 0.96
LIME1-209ENST00000494776 CASZ1Q86V15 1759 aa21.07■□□□□ 0.96
LIME1-209ENST00000494776 C4BP0C0L5 1744 aa21.07■□□□□ 0.96
LIME1-209ENST00000494776 PHF14O94880 888 aa21.06■□□□□ 0.96
LIME1-209ENST00000494776 NFE2L2Q16236 605 aa21.06■□□□□ 0.96
LIME1-209ENST00000494776 TAF1LQ8IZX4 1826 aa21.06■□□□□ 0.96
LIME1-209ENST00000494776 GNPATO15228 680 aa21.05■□□□□ 0.96
LIME1-209ENST00000494776 DCTN1Q14203 1278 aa21.05■□□□□ 0.96
LIME1-209ENST00000494776 CCDC146Q8IYE0 955 aa21.05■□□□□ 0.96
LIME1-209ENST00000494776 SLC16A10Q8TF71 515 aa21.05■□□□□ 0.96
LIME1-209ENST00000494776 ADAMTS8Q9UP79 889 aa21.05■□□□□ 0.96
LIME1-209ENST00000494776 CEMIPQ8WUJ3 1361 aa21.05■□□□□ 0.96
LIME1-209ENST00000494776 BTBD11A6QL63 1104 aa21.04■□□□□ 0.96
LIME1-209ENST00000494776 COL23A1Q86Y22 540 aaPredicted RBP21.04■□□□□ 0.96
LIME1-209ENST00000494776 QSER1Q2KHR3 1735 aa21.02■□□□□ 0.96
LIME1-209ENST00000494776 ZNF790Q6PG37 636 aa21.02■□□□□ 0.96
LIME1-209ENST00000494776 RUNDC1Q96C34 613 aa21.02■□□□□ 0.96
LIME1-209ENST00000494776 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.01■□□□□ 0.95
LIME1-209ENST00000494776 SSFA2P28290 1259 aa21.01■□□□□ 0.95
LIME1-209ENST00000494776 RIPK4P57078 832 aa21.01■□□□□ 0.95
LIME1-209ENST00000494776 RC3H1Q5TC82 1133 aaKnown RBP21.01■□□□□ 0.95
LIME1-209ENST00000494776 RTCBQ9Y3I0 505 aaKnown RBP21.01■□□□□ 0.95
LIME1-209ENST00000494776 TUBGCP6Q96RT7 1819 aa21.01■□□□□ 0.95
LIME1-209ENST00000494776 ZNF831Q5JPB2 1677 aa21■□□□□ 0.95
LIME1-209ENST00000494776 SMIM5Q71RC9 77 aa21■□□□□ 0.95
LIME1-209ENST00000494776 DNAJC10Q8IXB1 793 aa21■□□□□ 0.95
LIME1-209ENST00000494776 CNTNAP4Q9C0A0 1308 aa21■□□□□ 0.95
LIME1-209ENST00000494776 POLD1P28340 1107 aa20.99■□□□□ 0.95
LIME1-209ENST00000494776 TMPOP42166 694 aaKnown RBP20.99■□□□□ 0.95
LIME1-209ENST00000494776 CRKLP46109 303 aaKnown RBP20.99■□□□□ 0.95
LIME1-209ENST00000494776 TAF7Q15545 349 aaPredicted RBP20.99■□□□□ 0.95
LIME1-209ENST00000494776 NEUROD2Q15784 382 aa20.99■□□□□ 0.95
LIME1-209ENST00000494776 VSIG10Q8N0Z9 540 aa20.99■□□□□ 0.95
LIME1-209ENST00000494776 FMNL2Q96PY5 1086 aa20.99■□□□□ 0.95
LIME1-209ENST00000494776 PTGER2P43116 358 aa20.98■□□□□ 0.95
LIME1-209ENST00000494776 LMOD3Q0VAK6 560 aa20.98■□□□□ 0.95
LIME1-209ENST00000494776 CCDC184Q52MB2 194 aa20.98■□□□□ 0.95
LIME1-209ENST00000494776 TRAPPC3LQ5T215 181 aa20.98■□□□□ 0.95
LIME1-209ENST00000494776 AMIGO3Q86WK7 504 aa20.98■□□□□ 0.95
LIME1-209ENST00000494776 ZNF496Q96IT1 587 aaPredicted RBP20.98■□□□□ 0.95
LIME1-209ENST00000494776 MRS2Q9HD23 443 aa20.98■□□□□ 0.95
LIME1-209ENST00000494776 RRP7AQ9Y3A4 280 aaKnown RBP20.98■□□□□ 0.95
LIME1-209ENST00000494776 KCPQ6ZWJ8 1503 aa20.98■□□□□ 0.95
LIME1-209ENST00000494776 RPS6KA4O75676 772 aa20.97■□□□□ 0.95
LIME1-209ENST00000494776 THUMPD2Q9BTF0 503 aaKnown RBP20.97■□□□□ 0.95
LIME1-209ENST00000494776 SIPA1L3O60292 1781 aaPredicted RBP20.96■□□□□ 0.95
LIME1-209ENST00000494776 DCAF8L1A6NGE4 600 aa20.96■□□□□ 0.95
LIME1-209ENST00000494776 KCNQ3O43525 872 aa20.96■□□□□ 0.95
LIME1-209ENST00000494776 MSL1Q68DK7 614 aa20.96■□□□□ 0.95
LIME1-209ENST00000494776 PNISRQ8TF01 805 aaKnown RBP20.96■□□□□ 0.95
LIME1-209ENST00000494776 DLG5Q8TDM6 1919 aa20.96■□□□□ 0.95
LIME1-209ENST00000494776 UBR3Q6ZT12 1888 aa20.95■□□□□ 0.94
LIME1-209ENST00000494776 STARD3NLO95772 234 aa20.95■□□□□ 0.94
LIME1-209ENST00000494776 CYP19A1P11511 503 aaPredicted RBP20.95■□□□□ 0.94
LIME1-209ENST00000494776 TEX13AQ9BXU3 409 aaPredicted RBP20.95■□□□□ 0.94
LIME1-209ENST00000494776 CCDC87Q9NVE4 849 aa20.95■□□□□ 0.94
LIME1-209ENST00000494776 MIS18AQ9NYP9 233 aa20.95■□□□□ 0.94
LIME1-209ENST00000494776 HEG1Q9ULI3 1381 aa20.95■□□□□ 0.94
LIME1-209ENST00000494776 COL5A3P25940 1745 aaPredicted RBP20.95■□□□□ 0.94
LIME1-209ENST00000494776 TJP1Q07157 1748 aa20.95■□□□□ 0.94
LIME1-209ENST00000494776 ADRA2BP18089 450 aa20.94■□□□□ 0.94
LIME1-209ENST00000494776 RFC4P35249 363 aa20.94■□□□□ 0.94
LIME1-209ENST00000494776 ARXQ96QS3 562 aa20.94■□□□□ 0.94
LIME1-209ENST00000494776 INTS5Q6P9B9 1019 aaKnown RBP20.93■□□□□ 0.94
LIME1-209ENST00000494776 ARHGEF1Q92888 912 aaKnown RBP20.93■□□□□ 0.94
LIME1-209ENST00000494776 SGIP1Q9BQI5 828 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 843.1 ms