RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 CYP2U1Q7Z449 544 aa9.4□□□□□ -0.9
SMC4-224ENST00000494612 PCDHB11Q9Y5F2 797 aa9.4□□□□□ -0.9
SMC4-224ENST00000494612 NDUFB9Q9Y6M9 179 aa9.4□□□□□ -0.9
SMC4-224ENST00000494612 WDR44Q5JSH3 913 aa9.39□□□□□ -0.91
SMC4-224ENST00000494612 NBPF10Q6P3W6 841 aaKnown RBP9.39□□□□□ -0.91
SMC4-224ENST00000494612 NBPF15Q8N660 670 aa9.39□□□□□ -0.91
SMC4-224ENST00000494612 ZNF330Q9Y3S2 320 aaPredicted RBP9.39□□□□□ -0.91
SMC4-224ENST00000494612 TMEM132AQ24JP5 1023 aa9.38□□□□□ -0.91
SMC4-224ENST00000494612 TIMMDC1Q9NPL8 285 aa9.38□□□□□ -0.91
SMC4-224ENST00000494612 SHISA8B8ZZ34 492 aa9.37□□□□□ -0.91
SMC4-224ENST00000494612 PIK3R2O00459 728 aa9.37□□□□□ -0.91
SMC4-224ENST00000494612 F11P03951 625 aa9.37□□□□□ -0.91
SMC4-224ENST00000494612 GRIN2CQ14957 1233 aa9.37□□□□□ -0.91
SMC4-224ENST00000494612 CFHR5Q9BXR6 569 aa9.37□□□□□ -0.91
SMC4-224ENST00000494612 ARHGEF10LQ9HCE6 1279 aa9.37□□□□□ -0.91
SMC4-224ENST00000494612 CEP126Q9P2H0 1117 aa9.37□□□□□ -0.91
SMC4-224ENST00000494612 GDF2Q9UK05 429 aaPredicted RBP9.37□□□□□ -0.91
SMC4-224ENST00000494612 PHF24Q9UPV7 400 aa9.37□□□□□ -0.91
SMC4-224ENST00000494612 COL8A1P27658 744 aa9.36□□□□□ -0.91
SMC4-224ENST00000494612 GNRH1P01148 92 aa9.35□□□□□ -0.91
SMC4-224ENST00000494612 EDARADDQ8WWZ3 215 aa9.35□□□□□ -0.91
SMC4-224ENST00000494612 KLRG1Q96E93 195 aa9.35□□□□□ -0.91
SMC4-224ENST00000494612 CCDC85AQ96PX6 553 aaPredicted RBP9.35□□□□□ -0.91
SMC4-224ENST00000494612 CDCA7Q9BWT1 371 aaPredicted RBP9.35□□□□□ -0.91
SMC4-224ENST00000494612 HRH3Q9Y5N1 445 aa9.35□□□□□ -0.91
SMC4-224ENST00000494612 AMPD1P23109 780 aa9.34□□□□□ -0.91
SMC4-224ENST00000494612 TAS1R3Q7RTX0 852 aa9.34□□□□□ -0.91
SMC4-224ENST00000494612 ESYT1Q9BSJ8 1104 aa9.34□□□□□ -0.91
SMC4-224ENST00000494612 APBB1O00213 710 aa9.33□□□□□ -0.92
SMC4-224ENST00000494612 IL2RAP01589 272 aa9.33□□□□□ -0.92
SMC4-224ENST00000494612 CENPCQ03188 943 aa9.33□□□□□ -0.92
SMC4-224ENST00000494612 GOLGA6L1Q8N7Z2 621 aa9.33□□□□□ -0.92
SMC4-224ENST00000494612 CNKSR1Q969H4 720 aa9.33□□□□□ -0.92
SMC4-224ENST00000494612 WASLO00401 505 aaPredicted RBP9.32□□□□□ -0.92
SMC4-224ENST00000494612 THBS1P07996 1170 aa9.32□□□□□ -0.92
SMC4-224ENST00000494612 PHTF2Q8N3S3 785 aa9.32□□□□□ -0.92
SMC4-224ENST00000494612 XAGE2Q96GT9 111 aa9.32□□□□□ -0.92
SMC4-224ENST00000494612 KRTAP9-2Q9BYQ4 174 aa9.32□□□□□ -0.92
SMC4-224ENST00000494612 ESF1Q9H501 851 aaKnown RBP9.32□□□□□ -0.92
SMC4-224ENST00000494612 RAB6BQ9NRW1 208 aa9.32□□□□□ -0.92
SMC4-224ENST00000494612 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.31□□□□□ -0.92
SMC4-224ENST00000494612 TSGA10IPQ3SY00 556 aa9.31□□□□□ -0.92
SMC4-224ENST00000494612 C1orf229Q6ZS94 237 aaPredicted RBP9.31□□□□□ -0.92
SMC4-224ENST00000494612 GTF3C3Q9Y5Q9 886 aa9.31□□□□□ -0.92
SMC4-224ENST00000494612 C1QTNF9BB2RNN3 333 aa9.3□□□□□ -0.92
SMC4-224ENST00000494612 FHDC1Q9C0D6 1143 aaPredicted RBP9.3□□□□□ -0.92
SMC4-224ENST00000494612 TBC1D2BQ9UPU7 963 aa9.3□□□□□ -0.92
SMC4-224ENST00000494612 GNB5O14775 395 aa9.29□□□□□ -0.92
SMC4-224ENST00000494612 IRF5Q13568 498 aa9.29□□□□□ -0.92
SMC4-224ENST00000494612 SUV39H2Q9H5I1 410 aa9.29□□□□□ -0.92
SMC4-224ENST00000494612 GPAMQ9HCL2 828 aa9.29□□□□□ -0.92
SMC4-224ENST00000494612 MYCP01106 439 aaPredicted RBP9.28□□□□□ -0.92
SMC4-224ENST00000494612 LINC00114Q6XXX2 140 aa9.28□□□□□ -0.92
SMC4-224ENST00000494612 NOP53Q9NZM5 478 aaKnown RBP9.28□□□□□ -0.92
SMC4-224ENST00000494612 KRTAP9-6A0A140TA67 174 aa9.27□□□□□ -0.93
SMC4-224ENST00000494612 BMP4P12644 408 aa9.27□□□□□ -0.93
SMC4-224ENST00000494612 UBAP2LQ14157 1087 aaKnown RBP9.27□□□□□ -0.93
SMC4-224ENST00000494612 ZSCAN10Q96SZ4 725 aaPredicted RBP9.27□□□□□ -0.93
SMC4-224ENST00000494612 CHIC2Q9UKJ5 165 aa9.27□□□□□ -0.93
SMC4-224ENST00000494612 CSB-PGBD3P0DP91 1061 aa9.26□□□□□ -0.93
SMC4-224ENST00000494612 CD163Q86VB7 1156 aa9.26□□□□□ -0.93
SMC4-224ENST00000494612 PGBD3Q8N328 593 aa9.26□□□□□ -0.93
SMC4-224ENST00000494612 SEMA6BQ9H3T3 888 aa9.26□□□□□ -0.93
SMC4-224ENST00000494612 A0A1B0GTH6 734 aa9.25□□□□□ -0.93
SMC4-224ENST00000494612 PHKA2P46019 1235 aa9.25□□□□□ -0.93
SMC4-224ENST00000494612 EIF4G2P78344 907 aaKnown RBP eCLIP9.25□□□□□ -0.93
SMC4-224ENST00000494612 LBRQ14739 615 aaKnown RBP9.25□□□□□ -0.93
SMC4-224ENST00000494612 GTF2E1P29083 439 aaPredicted RBP9.24□□□□□ -0.93
SMC4-224ENST00000494612 USP4Q13107 963 aa9.24□□□□□ -0.93
SMC4-224ENST00000494612 C4orf17Q53FE4 359 aa9.24□□□□□ -0.93
SMC4-224ENST00000494612 ZMYM1Q5SVZ6 1142 aa9.24□□□□□ -0.93
SMC4-224ENST00000494612 SLCO4C1Q6ZQN7 724 aa9.24□□□□□ -0.93
SMC4-224ENST00000494612 GGA1Q9UJY5 639 aa9.24□□□□□ -0.93
SMC4-224ENST00000494612 ATXN7L1Q9ULK2 861 aaPredicted RBP9.24□□□□□ -0.93
SMC4-224ENST00000494612 ESCO1Q5FWF5 840 aa9.23□□□□□ -0.93
SMC4-224ENST00000494612 EFHC2Q5JST6 749 aa9.23□□□□□ -0.93
SMC4-224ENST00000494612 ETNK1Q9HBU6 452 aa9.23□□□□□ -0.93
SMC4-224ENST00000494612 STAU1O95793 577 aaKnown RBP9.22□□□□□ -0.93
SMC4-224ENST00000494612 HOXB4P17483 251 aaPredicted RBP9.22□□□□□ -0.93
SMC4-224ENST00000494612 CHRNA4P43681 627 aa9.22□□□□□ -0.93
SMC4-224ENST00000494612 PPARGC1BQ86YN6 1023 aaKnown RBP9.22□□□□□ -0.93
SMC4-224ENST00000494612 BTBD6Q96KE9 485 aa9.22□□□□□ -0.93
SMC4-224ENST00000494612 PRM3Q9NNZ6 103 aa9.22□□□□□ -0.93
SMC4-224ENST00000494612 DOLKQ9UPQ8 538 aa9.22□□□□□ -0.93
SMC4-224ENST00000494612 MSX1P28360 303 aa9.21□□□□□ -0.94
SMC4-224ENST00000494612 DOC2BQ14184 412 aa9.21□□□□□ -0.94
SMC4-224ENST00000494612 SLFNL1Q499Z3 407 aa9.21□□□□□ -0.94
SMC4-224ENST00000494612 GNASQ5JWF2 1037 aa9.21□□□□□ -0.94
SMC4-224ENST00000494612 TMEM214Q6NUQ4 689 aaKnown RBP9.21□□□□□ -0.94
SMC4-224ENST00000494612 FGFR3P22607 806 aa9.2□□□□□ -0.94
SMC4-224ENST00000494612 RNF135Q8IUD6 432 aa9.2□□□□□ -0.94
SMC4-224ENST00000494612 RUBCNLQ9H714 662 aa9.2□□□□□ -0.94
SMC4-224ENST00000494612 EPXP11678 715 aa9.19□□□□□ -0.94
SMC4-224ENST00000494612 DGKGP49619 791 aa9.19□□□□□ -0.94
SMC4-224ENST00000494612 VAC14Q08AM6 782 aa9.19□□□□□ -0.94
SMC4-224ENST00000494612 RHBDD1Q8TEB9 315 aa9.19□□□□□ -0.94
SMC4-224ENST00000494612 ABHD17AQ96GS6 310 aa9.19□□□□□ -0.94
SMC4-224ENST00000494612 NDFIP2Q9NV92 336 aa9.19□□□□□ -0.94
SMC4-224ENST00000494612 SCO2A0A1W2PP80 73 aa9.18□□□□□ -0.94
SMC4-224ENST00000494612 C2CD2LO14523 706 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 146.1 ms