RNA–Protein interactions for RNA: ENST00000494243.5

TTC3-224, Transcript of tetratricopeptide repeat domain 3, human

TSL 5

Gene TTC3, Length 861 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-224	ENST00000494243	SSFA2	P28290	1259 aa		32.69	■■■□□ 2.82
TTC3-224	ENST00000494243	AEBP1	Q8IUX7	1158 aa		32.69	■■■□□ 2.82
TTC3-224	ENST00000494243	CD2AP	Q9Y5K6	639 aa		32.69	■■■□□ 2.82
TTC3-224	ENST00000494243	DCAF5	Q96JK2	942 aa		32.68	■■■□□ 2.82
TTC3-224	ENST00000494243	AMER1	Q5JTC6	1135 aa	Predicted RBP	32.67	■■■□□ 2.82
TTC3-224	ENST00000494243	HSP90AB1	P08238	724 aa	Known RBP	32.66	■■■□□ 2.82
TTC3-224	ENST00000494243	SLC4A9	Q96Q91	983 aa		32.66	■■■□□ 2.82
TTC3-224	ENST00000494243	AMOT	Q4VCS5	1084 aa		32.65	■■■□□ 2.82
TTC3-224	ENST00000494243	ZNF530	Q6P9A1	599 aa	Predicted RBP	32.65	■■■□□ 2.82
TTC3-224	ENST00000494243	KIF7	Q2M1P5	1343 aa		32.65	■■■□□ 2.82
TTC3-224	ENST00000494243	KDR	P35968	1356 aa		32.65	■■■□□ 2.82
TTC3-224	ENST00000494243	KDM6A	O15550	1401 aa	Predicted RBP	32.65	■■■□□ 2.82
TTC3-224	ENST00000494243	GNPAT	O15228	680 aa		32.64	■■■□□ 2.82
TTC3-224	ENST00000494243	IL13	P35225	146 aa		32.63	■■■□□ 2.81
TTC3-224	ENST00000494243	GRIN3B	O60391	1043 aa		32.61	■■■□□ 2.81
TTC3-224	ENST00000494243	SULT6B1	Q6IMI4	303 aa		32.61	■■■□□ 2.81
TTC3-224	ENST00000494243	GOLGB1	Q14789	3259 aa	Known RBP	32.61	■■■□□ 2.81
TTC3-224	ENST00000494243	ZNF831	Q5JPB2	1677 aa		32.59	■■■□□ 2.81
TTC3-224	ENST00000494243	RBM42	Q9BTD8	480 aa	Known RBP	32.59	■■■□□ 2.81
TTC3-224	ENST00000494243	MTHFS	P49914	203 aa		32.58	■■■□□ 2.81
TTC3-224	ENST00000494243	CABP4	P57796	275 aa		32.58	■■■□□ 2.81
TTC3-224	ENST00000494243	PER1	O15534	1290 aa	Predicted RBP	32.57	■■■□□ 2.8
TTC3-224	ENST00000494243	C1orf141	Q5JVX7	400 aa		32.55	■■■□□ 2.8
TTC3-224	ENST00000494243	RC3H1	Q5TC82	1133 aa	Known RBP	32.54	■■■□□ 2.8
TTC3-224	ENST00000494243	NFATC2IP	Q8NCF5	419 aa		32.53	■■■□□ 2.8
TTC3-224	ENST00000494243	RTCB	Q9Y3I0	505 aa	Known RBP	32.53	■■■□□ 2.8
TTC3-224	ENST00000494243	COL5A3	P25940	1745 aa	Predicted RBP	32.52	■■■□□ 2.8
TTC3-224	ENST00000494243	TRAPPC3L	Q5T215	181 aa		32.52	■■■□□ 2.8
TTC3-224	ENST00000494243	CNTNAP4	Q9C0A0	1308 aa		32.51	■■■□□ 2.79
TTC3-224	ENST00000494243	MMP10	P09238	476 aa		32.49	■■■□□ 2.79
TTC3-224	ENST00000494243	ARHGEF1	Q92888	912 aa	Known RBP	32.49	■■■□□ 2.79
TTC3-224	ENST00000494243	PTCD1	O75127	700 aa	Known RBP	32.48	■■■□□ 2.79
TTC3-224	ENST00000494243	RPS6KA4	O75676	772 aa		32.48	■■■□□ 2.79
TTC3-224	ENST00000494243	C1QTNF8	P60827	252 aa		32.48	■■■□□ 2.79
TTC3-224	ENST00000494243	ADRA2B	P18089	450 aa		32.47	■■■□□ 2.79
TTC3-224	ENST00000494243	SCN11A	Q9UI33	1791 aa		32.45	■■■□□ 2.79
TTC3-224	ENST00000494243	MYH14	Q7Z406	1995 aa	Known RBP	32.45	■■■□□ 2.79
TTC3-224	ENST00000494243	AKAP4	Q5JQC9	854 aa		32.45	■■■□□ 2.79
TTC3-224	ENST00000494243	CC2D1B	Q5T0F9	858 aa	Known RBP	32.45	■■■□□ 2.79
TTC3-224	ENST00000494243	NLGN1	Q8N2Q7	840 aa		32.45	■■■□□ 2.79
TTC3-224	ENST00000494243	WWC3	Q9ULE0	1092 aa		32.44	■■■□□ 2.78
TTC3-224	ENST00000494243	HMOX1	P09601	288 aa		32.43	■■■□□ 2.78
TTC3-224	ENST00000494243	LGR6	Q9HBX8	967 aa		32.43	■■■□□ 2.78
TTC3-224	ENST00000494243	GYS1	P13807	737 aa		32.42	■■■□□ 2.78
TTC3-224	ENST00000494243	RFC4	P35249	363 aa		32.41	■■■□□ 2.78
TTC3-224	ENST00000494243	CRKL	P46109	303 aa	Known RBP	32.4	■■■□□ 2.78
TTC3-224	ENST00000494243	GIGYF1	O75420	1035 aa	Predicted RBP	32.39	■■■□□ 2.78
TTC3-224	ENST00000494243	SLC52A2	Q9HAB3	445 aa		32.39	■■■□□ 2.78
TTC3-224	ENST00000494243	CIC	Q96RK0	1608 aa	Predicted RBP	32.39	■■■□□ 2.78
TTC3-224	ENST00000494243	TJP1	Q07157	1748 aa		32.39	■■■□□ 2.78
TTC3-224	ENST00000494243	KIF13B	Q9NQT8	1826 aa		32.39	■■■□□ 2.78
TTC3-224	ENST00000494243	DIAPH1	O60610	1272 aa	Known RBP	32.38	■■■□□ 2.77
TTC3-224	ENST00000494243	C4A	P0C0L4	1744 aa		32.37	■■■□□ 2.77
TTC3-224	ENST00000494243	RNMT	O43148	476 aa	Known RBP	32.37	■■■□□ 2.77
TTC3-224	ENST00000494243	KIAA1551	Q9HCM1	1747 aa		32.37	■■■□□ 2.77
TTC3-224	ENST00000494243	PXDNL	A1KZ92	1463 aa		32.36	■■■□□ 2.77
TTC3-224	ENST00000494243	ATP10D	Q9P241	1426 aa		32.36	■■■□□ 2.77
TTC3-224	ENST00000494243	NPC1L1	Q9UHC9	1359 aa		32.36	■■■□□ 2.77
TTC3-224	ENST00000494243	MTHFSD	Q2M296	383 aa	Known RBP	32.36	■■■□□ 2.77
TTC3-224	ENST00000494243	INTS5	Q6P9B9	1019 aa	Known RBP	32.35	■■■□□ 2.77
TTC3-224	ENST00000494243	MRC1	P22897	1456 aa		32.35	■■■□□ 2.77
TTC3-224	ENST00000494243	C10orf71	Q711Q0	1435 aa		32.34	■■■□□ 2.77
TTC3-224	ENST00000494243	ADCY9	O60503	1353 aa		32.34	■■■□□ 2.77
TTC3-224	ENST00000494243	TGFB2	P61812	414 aa		32.34	■■■□□ 2.77
TTC3-224	ENST00000494243	SRP68	Q9UHB9	627 aa	Known RBP	32.33	■■■□□ 2.77
TTC3-224	ENST00000494243	COL3A1	P02461	1466 aa	Predicted RBP	32.32	■■■□□ 2.76
TTC3-224	ENST00000494243	SENP3-EIF4A1	A0A087X0R7	540 aa		32.32	■■■□□ 2.76
TTC3-224	ENST00000494243	ADAMTS7	Q9UKP4	1686 aa		32.31	■■■□□ 2.76
TTC3-224	ENST00000494243		A0A0G2JLW4	131 aa		32.31	■■■□□ 2.76
TTC3-224	ENST00000494243	SLC39A6	Q13433	755 aa		32.31	■■■□□ 2.76
TTC3-224	ENST00000494243	DNAJC10	Q8IXB1	793 aa		32.31	■■■□□ 2.76
TTC3-224	ENST00000494243	PARP3	Q9Y6F1	533 aa		32.31	■■■□□ 2.76
TTC3-224	ENST00000494243	USP42	Q9H9J4	1324 aa	Known RBP	32.3	■■■□□ 2.76
TTC3-224	ENST00000494243	N4BP2	Q86UW6	1770 aa	Predicted RBP	32.3	■■■□□ 2.76
TTC3-224	ENST00000494243	CCDC87	Q9NVE4	849 aa		32.3	■■■□□ 2.76
TTC3-224	ENST00000494243	VIRMA	Q69YN4	1812 aa	Known RBP	32.29	■■■□□ 2.76
TTC3-224	ENST00000494243	CNGB1	Q14028	1251 aa	Predicted RBP	32.28	■■■□□ 2.76
TTC3-224	ENST00000494243	FKBP8	Q14318	412 aa		32.28	■■■□□ 2.76
TTC3-224	ENST00000494243	KCP	Q6ZWJ8	1503 aa		32.26	■■■□□ 2.76
TTC3-224	ENST00000494243	CYP19A1	P11511	503 aa	Predicted RBP	32.26	■■■□□ 2.75
TTC3-224	ENST00000494243	DPEP1	P16444	411 aa		32.26	■■■□□ 2.75
TTC3-224	ENST00000494243	DDR1	Q08345	913 aa		32.24	■■■□□ 2.75
TTC3-224	ENST00000494243	GPBP1L1	Q9HC44	474 aa	Predicted RBP	32.24	■■■□□ 2.75
TTC3-224	ENST00000494243	BCS1L	Q9Y276	419 aa		32.24	■■■□□ 2.75
TTC3-224	ENST00000494243	SOS1	Q07889	1333 aa	Predicted RBP	32.24	■■■□□ 2.75
TTC3-224	ENST00000494243	KCNA3	P22001	575 aa		32.23	■■■□□ 2.75
TTC3-224	ENST00000494243	U2SURP	O15042	1029 aa	Known RBP	32.22	■■■□□ 2.75
TTC3-224	ENST00000494243	TM4SF1	P30408	202 aa		32.21	■■■□□ 2.75
TTC3-224	ENST00000494243	ZNF526	Q8TF50	670 aa	Predicted RBP	32.21	■■■□□ 2.75
TTC3-224	ENST00000494243	BRCA1	P38398	1863 aa	Known RBP	32.19	■■■□□ 2.74
TTC3-224	ENST00000494243	VSIG10	Q8N0Z9	540 aa		32.19	■■■□□ 2.74
TTC3-224	ENST00000494243	IL17RE	Q8NFR9	667 aa		32.19	■■■□□ 2.74
TTC3-224	ENST00000494243	USPL1	Q5W0Q7	1092 aa		32.18	■■■□□ 2.74
TTC3-224	ENST00000494243	ZBTB1	Q9Y2K1	713 aa		32.18	■■■□□ 2.74
TTC3-224	ENST00000494243	UBR2	Q8IWV8	1755 aa		32.17	■■■□□ 2.74
TTC3-224	ENST00000494243	POLRMT	O00411	1230 aa	Known RBP	32.17	■■■□□ 2.74
TTC3-224	ENST00000494243	ZPR1	O75312	459 aa		32.17	■■■□□ 2.74
TTC3-224	ENST00000494243	FCHSD2	O94868	740 aa		32.16	■■■□□ 2.74
TTC3-224	ENST00000494243	GNAT3	A8MTJ3	354 aa		32.15	■■■□□ 2.74
TTC3-224	ENST00000494243	GAS2L2	Q8NHY3	880 aa		32.15	■■■□□ 2.74

Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms