RNA–Protein interactions for RNA: ENST00000491183.5

HMGN1-219, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 527 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-219ENST00000491183 ATP6V1AP38606 617 aa24.4■■□□□ 1.5
HMGN1-219ENST00000491183 FLAD1Q8NFF5 587 aa24.4■■□□□ 1.5
HMGN1-219ENST00000491183 AK7Q96M32 723 aa24.4■■□□□ 1.5
HMGN1-219ENST00000491183 UBR3Q6ZT12 1888 aa24.4■■□□□ 1.5
HMGN1-219ENST00000491183 DIAPH1O60610 1272 aaKnown RBP24.39■■□□□ 1.49
HMGN1-219ENST00000491183 HMOX1P09601 288 aa24.39■■□□□ 1.49
HMGN1-219ENST00000491183 CABP4P57796 275 aa24.39■■□□□ 1.49
HMGN1-219ENST00000491183 C1orf141Q5JVX7 400 aa24.39■■□□□ 1.49
HMGN1-219ENST00000491183 SLC4A9Q96Q91 983 aa24.39■■□□□ 1.49
HMGN1-219ENST00000491183 MSL1Q68DK7 614 aa24.38■■□□□ 1.49
HMGN1-219ENST00000491183 COL3A1P02461 1466 aaPredicted RBP24.35■■□□□ 1.49
HMGN1-219ENST00000491183 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.35■■□□□ 1.49
HMGN1-219ENST00000491183 PHF14O94880 888 aa24.35■■□□□ 1.49
HMGN1-219ENST00000491183 KLHL34Q8N239 644 aa24.35■■□□□ 1.49
HMGN1-219ENST00000491183 NFATC2IPQ8NCF5 419 aa24.35■■□□□ 1.49
HMGN1-219ENST00000491183 SCN11AQ9UI33 1791 aa24.34■■□□□ 1.49
HMGN1-219ENST00000491183 YY1P25490 414 aa24.34■■□□□ 1.49
HMGN1-219ENST00000491183 AKAP4Q5JQC9 854 aa24.34■■□□□ 1.49
HMGN1-219ENST00000491183 RBM42Q9BTD8 480 aaKnown RBP24.34■■□□□ 1.49
HMGN1-219ENST00000491183 SSFA2P28290 1259 aa24.33■■□□□ 1.49
HMGN1-219ENST00000491183 ZNF831Q5JPB2 1677 aa24.33■■□□□ 1.49
HMGN1-219ENST00000491183 LGR6Q9HBX8 967 aa24.32■■□□□ 1.48
HMGN1-219ENST00000491183 GNPATO15228 680 aa24.31■■□□□ 1.48
HMGN1-219ENST00000491183 MTHFSDQ2M296 383 aaKnown RBP24.31■■□□□ 1.48
HMGN1-219ENST00000491183 NLGN2Q8NFZ4 835 aa24.31■■□□□ 1.48
HMGN1-219ENST00000491183 COL5A3P25940 1745 aaPredicted RBP24.28■■□□□ 1.48
HMGN1-219ENST00000491183 RNMTO43148 476 aaKnown RBP24.28■■□□□ 1.48
HMGN1-219ENST00000491183 PTCD1O75127 700 aaKnown RBP24.28■■□□□ 1.48
HMGN1-219ENST00000491183 VIRMAQ69YN4 1812 aaKnown RBP24.27■■□□□ 1.48
HMGN1-219ENST00000491183 U2SURPO15042 1029 aaKnown RBP24.27■■□□□ 1.48
HMGN1-219ENST00000491183 RC3H1Q5TC82 1133 aaKnown RBP24.27■■□□□ 1.48
HMGN1-219ENST00000491183 SLC52A2Q9HAB3 445 aa24.27■■□□□ 1.48
HMGN1-219ENST00000491183 MYH14Q7Z406 1995 aaKnown RBP24.25■■□□□ 1.47
HMGN1-219ENST00000491183 GPR162Q16538 588 aa24.25■■□□□ 1.47
HMGN1-219ENST00000491183 RTCBQ9Y3I0 505 aaKnown RBP24.25■■□□□ 1.47
HMGN1-219ENST00000491183 CNTNAP4Q9C0A0 1308 aa24.25■■□□□ 1.47
HMGN1-219ENST00000491183 ADAMTS7Q9UKP4 1686 aa24.24■■□□□ 1.47
HMGN1-219ENST00000491183 RPS6KA4O75676 772 aa24.23■■□□□ 1.47
HMGN1-219ENST00000491183 PPP2R1AP30153 589 aa24.23■■□□□ 1.47
HMGN1-219ENST00000491183 TRAPPC3LQ5T215 181 aa24.23■■□□□ 1.47
HMGN1-219ENST00000491183 MRC1P22897 1456 aa24.22■■□□□ 1.47
HMGN1-219ENST00000491183 ARHGEF1Q92888 912 aaKnown RBP24.22■■□□□ 1.47
HMGN1-219ENST00000491183 CD2APQ9Y5K6 639 aa24.22■■□□□ 1.47
HMGN1-219ENST00000491183 TJP1Q07157 1748 aa24.21■■□□□ 1.47
HMGN1-219ENST00000491183 SLC39A6Q13433 755 aa24.21■■□□□ 1.47
HMGN1-219ENST00000491183 CHD4Q14839 1912 aa24.21■■□□□ 1.47
HMGN1-219ENST00000491183 UTRNP46939 3433 aa24.21■■□□□ 1.47
HMGN1-219ENST00000491183 PELP1Q8IZL8 1130 aaKnown RBP24.2■■□□□ 1.46
HMGN1-219ENST00000491183 CFAP53Q96M91 514 aa24.2■■□□□ 1.46
HMGN1-219ENST00000491183 ADRA2BP18089 450 aa24.19■■□□□ 1.46
HMGN1-219ENST00000491183 CRKLP46109 303 aaKnown RBP24.19■■□□□ 1.46
HMGN1-219ENST00000491183 CICQ96RK0 1608 aaPredicted RBP24.19■■□□□ 1.46
HMGN1-219ENST00000491183 YBX3P16989 372 aaKnown RBP eCLIP24.17■■□□□ 1.46
HMGN1-219ENST00000491183 DNAJC10Q8IXB1 793 aa24.17■■□□□ 1.46
HMGN1-219ENST00000491183 IL17REQ8NFR9 667 aa24.17■■□□□ 1.46
HMGN1-219ENST00000491183 PHACTR3Q96KR7 559 aa24.17■■□□□ 1.46
HMGN1-219ENST00000491183 RSPH6AQ9H0K4 717 aa24.17■■□□□ 1.46
HMGN1-219ENST00000491183 MMP10P09238 476 aa24.16■■□□□ 1.46
HMGN1-219ENST00000491183 PRKAR2BP31323 418 aa24.16■■□□□ 1.46
HMGN1-219ENST00000491183 INTS5Q6P9B9 1019 aaKnown RBP24.16■■□□□ 1.46
HMGN1-219ENST00000491183 GAS2L2Q8NHY3 880 aa24.16■■□□□ 1.46
HMGN1-219ENST00000491183 GNAT3A8MTJ3 354 aa24.15■■□□□ 1.46
HMGN1-219ENST00000491183 GYS1P13807 737 aa24.15■■□□□ 1.46
HMGN1-219ENST00000491183 RFC4P35249 363 aa24.15■■□□□ 1.46
HMGN1-219ENST00000491183 NLGN1Q8N2Q7 840 aa24.15■■□□□ 1.46
HMGN1-219ENST00000491183 NUDCQ9Y266 331 aa24.15■■□□□ 1.46
HMGN1-219ENST00000491183 C4AP0C0L4 1744 aa24.15■■□□□ 1.46
HMGN1-219ENST00000491183 KCPQ6ZWJ8 1503 aa24.15■■□□□ 1.46
HMGN1-219ENST00000491183 U2AF1L5P0DN76 240 aaPredicted RBP24.12■■□□□ 1.45
HMGN1-219ENST00000491183 CYP19A1P11511 503 aaPredicted RBP24.12■■□□□ 1.45
HMGN1-219ENST00000491183 U2AF1Q01081 240 aaKnown RBP eCLIP24.12■■□□□ 1.451e-6■□□□□ 10.2
HMGN1-219ENST00000491183 ZNF784Q8NCA9 323 aaPredicted RBP24.11■■□□□ 1.45
HMGN1-219ENST00000491183 CCDC87Q9NVE4 849 aa24.11■■□□□ 1.45
HMGN1-219ENST00000491183 SRP68Q9UHB9 627 aaKnown RBP24.11■■□□□ 1.45
HMGN1-219ENST00000491183 GRIN3BO60391 1043 aa24.1■■□□□ 1.45
HMGN1-219ENST00000491183 UBR2Q8IWV8 1755 aa24.1■■□□□ 1.45
HMGN1-219ENST00000491183 GOLGB1Q14789 3259 aaKnown RBP24.1■■□□□ 1.45
HMGN1-219ENST00000491183 SIPA1L3O60292 1781 aaPredicted RBP24.09■■□□□ 1.45
HMGN1-219ENST00000491183 FCHSD2O94868 740 aa24.09■■□□□ 1.45
HMGN1-219ENST00000491183 TEFQ10587 303 aa24.09■■□□□ 1.45
HMGN1-219ENST00000491183 VSIG10Q8N0Z9 540 aa24.09■■□□□ 1.45
HMGN1-219ENST00000491183 USP42Q9H9J4 1324 aaKnown RBP24.08■■□□□ 1.44
HMGN1-219ENST00000491183 CEMIPQ8WUJ3 1361 aa24.07■■□□□ 1.44
HMGN1-219ENST00000491183 FKBP8Q14318 412 aa24.07■■□□□ 1.44
HMGN1-219ENST00000491183 KIF13BQ9NQT8 1826 aa24.07■■□□□ 1.44
HMGN1-219ENST00000491183 SOS1Q07889 1333 aaPredicted RBP24.07■■□□□ 1.44
HMGN1-219ENST00000491183 ZNF790Q6PG37 636 aa24.06■■□□□ 1.44
HMGN1-219ENST00000491183 TTC5Q8N0Z6 440 aa24.06■■□□□ 1.44
HMGN1-219ENST00000491183 ZNF496Q96IT1 587 aaPredicted RBP24.06■■□□□ 1.44
HMGN1-219ENST00000491183 WWC3Q9ULE0 1092 aa24.06■■□□□ 1.44
HMGN1-219ENST00000491183 ZBTB1Q9Y2K1 713 aa24.05■■□□□ 1.44
HMGN1-219ENST00000491183 PARP3Q9Y6F1 533 aa24.04■■□□□ 1.44
HMGN1-219ENST00000491183 KIAA1551Q9HCM1 1747 aa24.04■■□□□ 1.44
HMGN1-219ENST00000491183 C10orf71Q711Q0 1435 aa24.02■■□□□ 1.44
HMGN1-219ENST00000491183 PXDNLA1KZ92 1463 aa24.02■■□□□ 1.44
HMGN1-219ENST00000491183 KCNQ3O43525 872 aa24.02■■□□□ 1.44
HMGN1-219ENST00000491183 USPL1Q5W0Q7 1092 aa24.02■■□□□ 1.44
HMGN1-219ENST00000491183 HEG1Q9ULI3 1381 aa24.02■■□□□ 1.44
HMGN1-219ENST00000491183 N4BP2Q86UW6 1770 aaPredicted RBP24.01■■□□□ 1.43
HMGN1-219ENST00000491183 TM4SF1P30408 202 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms