RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CANXP27824 592 aaKnown RBP27.83■■■□□ 2.05
SMC4-221ENST00000489573 KRT24Q2M2I5 525 aa27.83■■■□□ 2.05
SMC4-221ENST00000489573 FNBP4Q8N3X1 1017 aaPredicted RBP27.82■■■□□ 2.04
SMC4-221ENST00000489573 CDCA7Q9BWT1 371 aaPredicted RBP27.82■■■□□ 2.04
SMC4-221ENST00000489573 BCL9LQ86UU0 1499 aa27.82■■■□□ 2.04
SMC4-221ENST00000489573 BTBD11A6QL63 1104 aa27.82■■■□□ 2.04
SMC4-221ENST00000489573 SLC52A2Q9HAB3 445 aa27.82■■■□□ 2.04
SMC4-221ENST00000489573 FRAT1Q92837 279 aaPredicted RBP27.81■■■□□ 2.04
SMC4-221ENST00000489573 NKX1-1Q15270 411 aaPredicted RBP27.8■■■□□ 2.04
SMC4-221ENST00000489573 MEX3CQ5U5Q3 659 aaKnown RBP27.8■■■□□ 2.04
SMC4-221ENST00000489573 C20orf194Q5TEA3 1177 aa27.79■■■□□ 2.04
SMC4-221ENST00000489573 DDX54Q8TDD1 881 aaKnown RBP27.79■■■□□ 2.04
SMC4-221ENST00000489573 CCDC9Q9Y3X0 531 aaKnown RBP27.79■■■□□ 2.04
SMC4-221ENST00000489573 SOS1Q07889 1333 aaPredicted RBP27.79■■■□□ 2.04
SMC4-221ENST00000489573 KIF16BQ96L93 1317 aa27.79■■■□□ 2.04
SMC4-221ENST00000489573 BRPF1P55201 1214 aaPredicted RBP27.78■■■□□ 2.04
SMC4-221ENST00000489573 TNS2Q63HR2 1409 aa27.78■■■□□ 2.04
SMC4-221ENST00000489573 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.78■■■□□ 2.04
SMC4-221ENST00000489573 VPS72Q15906 364 aa27.77■■■□□ 2.04
SMC4-221ENST00000489573 PDE3AQ14432 1141 aa27.77■■■□□ 2.04
SMC4-221ENST00000489573 EIF4A1P60842 406 aaKnown RBP27.76■■■□□ 2.03
SMC4-221ENST00000489573 ZKSCAN2Q63HK3 967 aa27.76■■■□□ 2.03
SMC4-221ENST00000489573 BARGINQ6ZT62 677 aa27.76■■■□□ 2.03
SMC4-221ENST00000489573 MRPL50Q8N5N7 158 aaKnown RBP27.76■■■□□ 2.03
SMC4-221ENST00000489573 CRBNQ96SW2 442 aa27.75■■■□□ 2.03
SMC4-221ENST00000489573 EXOC5O00471 708 aa27.74■■■□□ 2.03
SMC4-221ENST00000489573 CABP4P57796 275 aa27.74■■■□□ 2.03
SMC4-221ENST00000489573 EXOC6Q8TAG9 804 aa27.74■■■□□ 2.03
SMC4-221ENST00000489573 PPP4R2Q9NY27 417 aa27.74■■■□□ 2.03
SMC4-221ENST00000489573 USP21Q9UK80 565 aa27.74■■■□□ 2.03
SMC4-221ENST00000489573 KCNQ3O43525 872 aa27.73■■■□□ 2.03
SMC4-221ENST00000489573 NFATC2IPQ8NCF5 419 aa27.73■■■□□ 2.03
SMC4-221ENST00000489573 RGS17Q9UGC6 210 aaPredicted RBP27.73■■■□□ 2.03
SMC4-221ENST00000489573 ERVV-2B6SEH9 535 aa27.73■■■□□ 2.03
SMC4-221ENST00000489573 NOB1Q9ULX3 412 aaKnown RBP27.73■■■□□ 2.03
SMC4-221ENST00000489573 TCERG1O14776 1098 aaKnown RBP27.72■■■□□ 2.03
SMC4-221ENST00000489573 IPO8O15397 1037 aaKnown RBP27.72■■■□□ 2.03
SMC4-221ENST00000489573 HOXB7P09629 217 aa27.71■■■□□ 2.03
SMC4-221ENST00000489573 MS4A1P11836 297 aa27.7■■■□□ 2.03
SMC4-221ENST00000489573 DDB1Q16531 1140 aa27.69■■■□□ 2.02
SMC4-221ENST00000489573 ATF7IPQ6VMQ6 1270 aa27.69■■■□□ 2.02
SMC4-221ENST00000489573 ZNF790Q6PG37 636 aa27.69■■■□□ 2.02
SMC4-221ENST00000489573 TOGARAM1Q9Y4F4 1720 aa27.69■■■□□ 2.02
SMC4-221ENST00000489573 AFF2P51816 1311 aa27.68■■■□□ 2.02
SMC4-221ENST00000489573 TRIM27P14373 513 aa27.68■■■□□ 2.02
SMC4-221ENST00000489573 PANK1Q8TE04 598 aa27.68■■■□□ 2.02
SMC4-221ENST00000489573 TNNQ9UQP3 1299 aa27.68■■■□□ 2.02
SMC4-221ENST00000489573 CCDC30Q5VVM6 783 aa27.67■■■□□ 2.02
SMC4-221ENST00000489573 ARHGAP45Q92619 1136 aa27.67■■■□□ 2.02
SMC4-221ENST00000489573 HEG1Q9ULI3 1381 aa27.67■■■□□ 2.02
SMC4-221ENST00000489573 SLC39A6Q13433 755 aa27.66■■■□□ 2.02
SMC4-221ENST00000489573 FTSJ3Q8IY81 847 aaKnown RBP27.66■■■□□ 2.02
SMC4-221ENST00000489573 DZIP1LQ8IYY4 767 aaKnown RBP27.66■■■□□ 2.02
SMC4-221ENST00000489573 CHMP4AQ9BY43 222 aa27.65■■■□□ 2.02
SMC4-221ENST00000489573 RLBP1P12271 317 aa27.65■■■□□ 2.02
SMC4-221ENST00000489573 TTC5Q8N0Z6 440 aa27.65■■■□□ 2.02
SMC4-221ENST00000489573 CLUAP1Q96AJ1 413 aa27.65■■■□□ 2.02
SMC4-221ENST00000489573 STK31Q9BXU1 1019 aa27.65■■■□□ 2.02
SMC4-221ENST00000489573 FAM98CQ17RN3 349 aaKnown RBP27.64■■■□□ 2.01
SMC4-221ENST00000489573 HDGFL1Q5TGJ6 251 aa27.64■■■□□ 2.01
SMC4-221ENST00000489573 GIGYF1O75420 1035 aaPredicted RBP27.63■■■□□ 2.01
SMC4-221ENST00000489573 COG6Q9Y2V7 657 aa27.62■■■□□ 2.01
SMC4-221ENST00000489573 ATRNO75882 1429 aa27.62■■■□□ 2.01
SMC4-221ENST00000489573 PAPPAQ13219 1627 aa27.62■■■□□ 2.01
SMC4-221ENST00000489573 SLC4A2P04920 1241 aa27.61■■■□□ 2.01
SMC4-221ENST00000489573 API5Q9BZZ5 524 aaKnown RBP27.61■■■□□ 2.01
SMC4-221ENST00000489573 TMOD3Q9NYL9 352 aa27.61■■■□□ 2.01
SMC4-221ENST00000489573 PTPRCP08575 1304 aa27.6■■■□□ 2.01
SMC4-221ENST00000489573 NECTIN2Q92692 538 aa27.6■■■□□ 2.01
SMC4-221ENST00000489573 ZNF496Q96IT1 587 aaPredicted RBP27.59■■■□□ 2.01
SMC4-221ENST00000489573 FMNL2Q96PY5 1086 aa27.59■■■□□ 2.01
SMC4-221ENST00000489573 TRPC5Q9UL62 973 aaPredicted RBP27.59■■■□□ 2.01
SMC4-221ENST00000489573 GLI3P10071 1580 aa27.58■■■□□ 2.01
SMC4-221ENST00000489573 THSD7AQ9UPZ6 1657 aa27.58■■■□□ 2.01
SMC4-221ENST00000489573 EIF2S2P20042 333 aaKnown RBP27.58■■■□□ 2.01
SMC4-221ENST00000489573 MVPQ14764 893 aaKnown RBP27.58■■■□□ 2.01
SMC4-221ENST00000489573 GJD4Q96KN9 370 aaPredicted RBP27.58■■■□□ 2.01
SMC4-221ENST00000489573 B4GALNT3Q6L9W6 998 aa27.57■■■□□ 2
SMC4-221ENST00000489573 POTEAQ6S8J7 498 aa27.57■■■□□ 2
SMC4-221ENST00000489573 MARCH10Q8NA82 808 aaPredicted RBP27.57■■■□□ 2
SMC4-221ENST00000489573 CCDC136Q96JN2 1154 aa27.56■■■□□ 2
SMC4-221ENST00000489573 UBR2Q8IWV8 1755 aa27.56■■■□□ 2
SMC4-221ENST00000489573 ABCC4O15439 1325 aa27.56■■■□□ 2
SMC4-221ENST00000489573 DOT1LQ8TEK3 1739 aa27.55■■■□□ 2
SMC4-221ENST00000489573 C5P01031 1676 aa27.55■■■□□ 2
SMC4-221ENST00000489573 ITGB4P16144 1822 aa27.55■■■□□ 2
SMC4-221ENST00000489573 SNRPA1P09661 255 aaKnown RBP27.55■■■□□ 2
SMC4-221ENST00000489573 TMEM57Q8N5G2 664 aa27.55■■■□□ 2
SMC4-221ENST00000489573 KCPQ6ZWJ8 1503 aa27.55■■■□□ 2
SMC4-221ENST00000489573 CACNA1FO60840 1977 aa27.54■■■□□ 2
SMC4-221ENST00000489573 A0A0G2JS52 829 aa27.54■■■□□ 2
SMC4-221ENST00000489573 PRAMEF22A3QJZ6 481 aa27.54■■■□□ 2
SMC4-221ENST00000489573 MYT1Q01538 1121 aa27.54■■■□□ 2
SMC4-221ENST00000489573 G2E3Q7L622 706 aa27.54■■■□□ 2
SMC4-221ENST00000489573 PIGBQ92521 554 aa27.54■■■□□ 2
SMC4-221ENST00000489573 BCL9O00512 1426 aa27.54■■■□□ 2
SMC4-221ENST00000489573 RGS12O14924 1447 aa27.54■■■□□ 2
SMC4-221ENST00000489573 ITPRIPQ8IWB1 547 aa27.53■■■□□ 2
SMC4-221ENST00000489573 AAMPQ13685 434 aa27.52■■■□□ 2
SMC4-221ENST00000489573 CHPF2Q9P2E5 772 aa27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms