RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 GNAI1P63096 354 aa18.11■□□□□ 0.49
C9orf3-221ENST00000489562 TAF7Q15545 349 aaPredicted RBP18.11■□□□□ 0.49
C9orf3-221ENST00000489562 FAM196AQ6ZSG2 479 aa18.11■□□□□ 0.49
C9orf3-221ENST00000489562 IFT57Q9NWB7 429 aa18.11■□□□□ 0.49
C9orf3-221ENST00000489562 CFAP44Q96MT7 982 aa18.1■□□□□ 0.49
C9orf3-221ENST00000489562 PAPPAQ13219 1627 aa18.09■□□□□ 0.49
C9orf3-221ENST00000489562 E9PSI1 815 aa18.09■□□□□ 0.49
C9orf3-221ENST00000489562 TMOD3Q9NYL9 352 aa18.09■□□□□ 0.49
C9orf3-221ENST00000489562 ZNF853P0CG23 659 aa18.08■□□□□ 0.48
C9orf3-221ENST00000489562 MYH16Q9H6N6 1097 aa18.08■□□□□ 0.48
C9orf3-221ENST00000489562 BTAF1O14981 1849 aa18.07■□□□□ 0.48
C9orf3-221ENST00000489562 UBR2Q8IWV8 1755 aa18.07■□□□□ 0.48
C9orf3-221ENST00000489562 CHL1O00533 1208 aa18.07■□□□□ 0.48
C9orf3-221ENST00000489562 NFATC2IPQ8NCF5 419 aa18.07■□□□□ 0.48
C9orf3-221ENST00000489562 PRIM1P49642 420 aaKnown RBP18.06■□□□□ 0.48
C9orf3-221ENST00000489562 SLFN5Q08AF3 891 aa18.06■□□□□ 0.48
C9orf3-221ENST00000489562 BTBD11A6QL63 1104 aa18.05■□□□□ 0.48
C9orf3-221ENST00000489562 SYTL4Q96C24 671 aaPredicted RBP18.05■□□□□ 0.48
C9orf3-221ENST00000489562 TSPYL4Q9UJ04 414 aa18.05■□□□□ 0.48
C9orf3-221ENST00000489562 LAS1LQ9Y4W2 734 aaKnown RBP18.05■□□□□ 0.48
C9orf3-221ENST00000489562 FAM182BQ5T319 152 aa18.04■□□□□ 0.48
C9orf3-221ENST00000489562 PIGBQ92521 554 aa18.04■□□□□ 0.48
C9orf3-221ENST00000489562 ACSBG1Q96GR2 724 aa18.04■□□□□ 0.48
C9orf3-221ENST00000489562 TRMT2AQ8IZ69 625 aaKnown RBP18.03■□□□□ 0.48
C9orf3-221ENST00000489562 MBIPQ9NS73 344 aa18.03■□□□□ 0.48
C9orf3-221ENST00000489562 FANCIQ9NVI1 1328 aa18.02■□□□□ 0.48
C9orf3-221ENST00000489562 ZNF790Q6PG37 636 aa18.02■□□□□ 0.48
C9orf3-221ENST00000489562 TTC5Q8N0Z6 440 aa18.02■□□□□ 0.48
C9orf3-221ENST00000489562 CDCA7LQ96GN5 454 aa18.02■□□□□ 0.48
C9orf3-221ENST00000489562 BCL11BQ9C0K0 894 aaPredicted RBP18.02■□□□□ 0.48
C9orf3-221ENST00000489562 SPINK5Q9NQ38 1064 aaPredicted RBP18.02■□□□□ 0.48
C9orf3-221ENST00000489562 TNS1Q9HBL0 1735 aaKnown RBP18.01■□□□□ 0.47
C9orf3-221ENST00000489562 SMARCC1Q92922 1105 aaPredicted RBP18.01■□□□□ 0.47
C9orf3-221ENST00000489562 ZNF831Q5JPB2 1677 aa18.01■□□□□ 0.47
C9orf3-221ENST00000489562 KCNQ2O43526 872 aa18■□□□□ 0.47
C9orf3-221ENST00000489562 DUSP27Q5VZP5 1158 aa18■□□□□ 0.47
C9orf3-221ENST00000489562 TSR2Q969E8 191 aaKnown RBP18■□□□□ 0.47
C9orf3-221ENST00000489562 LY75O60449 1722 aa18■□□□□ 0.47
C9orf3-221ENST00000489562 RGPD3A6NKT7 1758 aaPredicted RBP17.99■□□□□ 0.47
C9orf3-221ENST00000489562 RGPD4Q7Z3J3 1758 aa17.99■□□□□ 0.47
C9orf3-221ENST00000489562 KCPQ6ZWJ8 1503 aa17.99■□□□□ 0.47
C9orf3-221ENST00000489562 CICQ96RK0 1608 aaPredicted RBP17.99■□□□□ 0.47
C9orf3-221ENST00000489562 MIS18AQ9NYP9 233 aa17.99■□□□□ 0.47
C9orf3-221ENST00000489562 LAMB4A4D0S4 1761 aa17.99■□□□□ 0.47
C9orf3-221ENST00000489562 SOS1Q07889 1333 aaPredicted RBP17.98■□□□□ 0.47
C9orf3-221ENST00000489562 SLC39A6Q13433 755 aa17.98■□□□□ 0.47
C9orf3-221ENST00000489562 ATG3Q9NT62 314 aa17.98■□□□□ 0.47
C9orf3-221ENST00000489562 CACNA1FO60840 1977 aa17.98■□□□□ 0.47
C9orf3-221ENST00000489562 TRIM37O94972 964 aa17.97■□□□□ 0.47
C9orf3-221ENST00000489562 EIF4A1P60842 406 aaKnown RBP17.97■□□□□ 0.47
C9orf3-221ENST00000489562 FMNL2Q96PY5 1086 aa17.97■□□□□ 0.47
C9orf3-221ENST00000489562 ASAP1Q9ULH1 1129 aa17.97■□□□□ 0.47
C9orf3-221ENST00000489562 PALLDQ8WX93 1383 aa17.96■□□□□ 0.47
C9orf3-221ENST00000489562 HOXB7P09629 217 aa17.96■□□□□ 0.47
C9orf3-221ENST00000489562 CT47B1P0C2W7 299 aaPredicted RBP17.96■□□□□ 0.47
C9orf3-221ENST00000489562 C5P01031 1676 aa17.96■□□□□ 0.47
C9orf3-221ENST00000489562 HEG1Q9ULI3 1381 aa17.95■□□□□ 0.46
C9orf3-221ENST00000489562 KCNQ3O43525 872 aa17.95■□□□□ 0.46
C9orf3-221ENST00000489562 VSIG10Q8N0Z9 540 aa17.95■□□□□ 0.46
C9orf3-221ENST00000489562 CHMP4AQ9BY43 222 aa17.95■□□□□ 0.46
C9orf3-221ENST00000489562 EXOSC9Q06265 439 aaKnown RBP17.94■□□□□ 0.46
C9orf3-221ENST00000489562 ZNF496Q96IT1 587 aaPredicted RBP17.94■□□□□ 0.46
C9orf3-221ENST00000489562 TJP1Q07157 1748 aa17.93■□□□□ 0.46
C9orf3-221ENST00000489562 SNRPA1P09661 255 aaKnown RBP17.93■□□□□ 0.46
C9orf3-221ENST00000489562 HMGB2P26583 209 aaKnown RBP17.93■□□□□ 0.46
C9orf3-221ENST00000489562 PTF1AQ7RTS3 328 aa17.93■□□□□ 0.46
C9orf3-221ENST00000489562 ZNF428Q96B54 188 aa17.93■□□□□ 0.46
C9orf3-221ENST00000489562 TAF1LQ8IZX4 1826 aa17.93■□□□□ 0.46
C9orf3-221ENST00000489562 PTCD1O75127 700 aaKnown RBP17.92■□□□□ 0.46
C9orf3-221ENST00000489562 TWISTNBQ3B726 338 aaPredicted RBP17.92■□□□□ 0.46
C9orf3-221ENST00000489562 TEX13AQ9BXU3 409 aaPredicted RBP17.92■□□□□ 0.46
C9orf3-221ENST00000489562 COL5A3P25940 1745 aaPredicted RBP17.92■□□□□ 0.46
C9orf3-221ENST00000489562 EP400Q96L91 3159 aa17.91■□□□□ 0.46
C9orf3-221ENST00000489562 LOC102724428A0A0B4J2F2 783 aa17.91■□□□□ 0.46
C9orf3-221ENST00000489562 GIGYF1O75420 1035 aaPredicted RBP17.91■□□□□ 0.46
C9orf3-221ENST00000489562 SIK1P57059 783 aa17.91■□□□□ 0.46
C9orf3-221ENST00000489562 CCDC125Q86Z20 511 aa17.91■□□□□ 0.46
C9orf3-221ENST00000489562 C8orf58Q8NAV2 365 aa17.91■□□□□ 0.46
C9orf3-221ENST00000489562 RBM42Q9BTD8 480 aaKnown RBP17.91■□□□□ 0.46
C9orf3-221ENST00000489562 PLSCR1O15162 318 aa17.9■□□□□ 0.46
C9orf3-221ENST00000489562 CENPBP07199 599 aaPredicted RBP17.9■□□□□ 0.46
C9orf3-221ENST00000489562 SF3B2Q13435 895 aaKnown RBP17.9■□□□□ 0.46
C9orf3-221ENST00000489562 APBA3O96018 575 aa17.89■□□□□ 0.45
C9orf3-221ENST00000489562 KRT24Q2M2I5 525 aa17.89■□□□□ 0.45
C9orf3-221ENST00000489562 TSPYL6Q8N831 410 aa17.89■□□□□ 0.45
C9orf3-221ENST00000489562 VAMP4O75379 141 aa17.88■□□□□ 0.45
C9orf3-221ENST00000489562 SLC27A3Q5K4L6 730 aa17.88■□□□□ 0.45
C9orf3-221ENST00000489562 ELL2O00472 640 aaPredicted RBP17.87■□□□□ 0.45
C9orf3-221ENST00000489562 STARD3NLO95772 234 aa17.86■□□□□ 0.45
C9orf3-221ENST00000489562 ATP6V1AP38606 617 aa17.86■□□□□ 0.45
C9orf3-221ENST00000489562 BAG6P46379 1132 aa17.86■□□□□ 0.45
C9orf3-221ENST00000489562 HDGFL1Q5TGJ6 251 aa17.86■□□□□ 0.45
C9orf3-221ENST00000489562 CCDC30Q5VVM6 783 aa17.86■□□□□ 0.45
C9orf3-221ENST00000489562 CCNL1Q9UK58 526 aaPredicted RBP17.86■□□□□ 0.45
C9orf3-221ENST00000489562 ERBB4Q15303 1308 aa17.86■□□□□ 0.45
C9orf3-221ENST00000489562 RREB1Q92766 1687 aa17.86■□□□□ 0.45
C9orf3-221ENST00000489562 ALDH1L2Q3SY69 923 aa17.85■□□□□ 0.45
C9orf3-221ENST00000489562 DNAJC10Q8IXB1 793 aa17.85■□□□□ 0.45
C9orf3-221ENST00000489562 SLC4A9Q96Q91 983 aa17.85■□□□□ 0.45
C9orf3-221ENST00000489562 STK31Q9BXU1 1019 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms