RNA–Protein interactions for RNA: ENST00000488494.5

ITGB1-215, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-215ENST00000488494 ZNF831Q5JPB2 1677 aa23.89■■□□□ 1.42
ITGB1-215ENST00000488494 MRC1P22897 1456 aa23.89■■□□□ 1.42
ITGB1-215ENST00000488494 PPP2R1AP30153 589 aa23.89■■□□□ 1.41
ITGB1-215ENST00000488494 AKAP4Q5JQC9 854 aa23.89■■□□□ 1.41
ITGB1-215ENST00000488494 COL23A1Q86Y22 540 aaPredicted RBP23.89■■□□□ 1.41
ITGB1-215ENST00000488494 ITPK1Q13572 414 aa23.88■■□□□ 1.41
ITGB1-215ENST00000488494 ARXQ96QS3 562 aa23.88■■□□□ 1.41
ITGB1-215ENST00000488494 FHDC1Q9C0D6 1143 aaPredicted RBP23.88■■□□□ 1.41
ITGB1-215ENST00000488494 ADAMTS7Q9UKP4 1686 aa23.87■■□□□ 1.41
ITGB1-215ENST00000488494 ATP6V1AP38606 617 aa23.87■■□□□ 1.41
ITGB1-215ENST00000488494 AMIGO3Q86WK7 504 aa23.87■■□□□ 1.41
ITGB1-215ENST00000488494 MTHFSDQ2M296 383 aaKnown RBP23.86■■□□□ 1.41
ITGB1-215ENST00000488494 COL5A3P25940 1745 aaPredicted RBP23.86■■□□□ 1.41
ITGB1-215ENST00000488494 VIRMAQ69YN4 1812 aaKnown RBP23.86■■□□□ 1.41
ITGB1-215ENST00000488494 PHF14O94880 888 aa23.85■■□□□ 1.41
ITGB1-215ENST00000488494 POLD1P28340 1107 aa23.85■■□□□ 1.41
ITGB1-215ENST00000488494 RBM42Q9BTD8 480 aaKnown RBP23.85■■□□□ 1.41
ITGB1-215ENST00000488494 MSL1Q68DK7 614 aa23.84■■□□□ 1.41
ITGB1-215ENST00000488494 NFATC2IPQ8NCF5 419 aa23.84■■□□□ 1.41
ITGB1-215ENST00000488494 GNPATO15228 680 aa23.83■■□□□ 1.41
ITGB1-215ENST00000488494 SMIM5Q71RC9 77 aa23.83■■□□□ 1.41
ITGB1-215ENST00000488494 FLAD1Q8NFF5 587 aa23.83■■□□□ 1.41
ITGB1-215ENST00000488494 SLC4A9Q96Q91 983 aa23.83■■□□□ 1.41
ITGB1-215ENST00000488494 TJP1Q07157 1748 aa23.82■■□□□ 1.4
ITGB1-215ENST00000488494 MAP3K5Q99683 1374 aa23.82■■□□□ 1.4
ITGB1-215ENST00000488494 CICQ96RK0 1608 aaPredicted RBP23.82■■□□□ 1.4
ITGB1-215ENST00000488494 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.81■■□□□ 1.4
ITGB1-215ENST00000488494 SYT17Q9BSW7 474 aa23.81■■□□□ 1.4
ITGB1-215ENST00000488494 SLC52A2Q9HAB3 445 aa23.81■■□□□ 1.4
ITGB1-215ENST00000488494 LGR6Q9HBX8 967 aa23.81■■□□□ 1.4
ITGB1-215ENST00000488494 RNMTO43148 476 aaKnown RBP23.8■■□□□ 1.4
ITGB1-215ENST00000488494 PTCD1O75127 700 aaKnown RBP23.8■■□□□ 1.4
ITGB1-215ENST00000488494 SSFA2P28290 1259 aa23.8■■□□□ 1.4
ITGB1-215ENST00000488494 KLHL34Q8N239 644 aa23.8■■□□□ 1.4
ITGB1-215ENST00000488494 PRKAR2BP31323 418 aa23.79■■□□□ 1.4
ITGB1-215ENST00000488494 RSPH6AQ9H0K4 717 aa23.79■■□□□ 1.4
ITGB1-215ENST00000488494 NUDCQ9Y266 331 aa23.79■■□□□ 1.4
ITGB1-215ENST00000488494 GAS2L2Q8NHY3 880 aa23.78■■□□□ 1.4
ITGB1-215ENST00000488494 U2AF1L5P0DN76 240 aaPredicted RBP23.77■■□□□ 1.4
ITGB1-215ENST00000488494 U2AF1Q01081 240 aaKnown RBP eCLIP23.77■■□□□ 1.4
ITGB1-215ENST00000488494 KCPQ6ZWJ8 1503 aa23.77■■□□□ 1.4
ITGB1-215ENST00000488494 CNTNAP4Q9C0A0 1308 aa23.77■■□□□ 1.4
ITGB1-215ENST00000488494 DCAF8L1A6NGE4 600 aa23.75■■□□□ 1.39
ITGB1-215ENST00000488494 UBR2Q8IWV8 1755 aa23.74■■□□□ 1.39
ITGB1-215ENST00000488494 PHACTR3Q96KR7 559 aa23.74■■□□□ 1.39
ITGB1-215ENST00000488494 C4AP0C0L4 1744 aa23.73■■□□□ 1.39
ITGB1-215ENST00000488494 SIPA1L3O60292 1781 aaPredicted RBP23.73■■□□□ 1.39
ITGB1-215ENST00000488494 GNAT3A8MTJ3 354 aa23.73■■□□□ 1.39
ITGB1-215ENST00000488494 RTCBQ9Y3I0 505 aaKnown RBP23.73■■□□□ 1.39
ITGB1-215ENST00000488494 SLC39A6Q13433 755 aa23.72■■□□□ 1.39
ITGB1-215ENST00000488494 CRKLP46109 303 aaKnown RBP23.71■■□□□ 1.39
ITGB1-215ENST00000488494 DDX10Q13206 875 aaKnown RBP23.71■■□□□ 1.39
ITGB1-215ENST00000488494 RC3H1Q5TC82 1133 aaKnown RBP23.71■■□□□ 1.39
ITGB1-215ENST00000488494 MYH14Q7Z406 1995 aaKnown RBP23.71■■□□□ 1.39
ITGB1-215ENST00000488494 TEFQ10587 303 aa23.69■■□□□ 1.38
ITGB1-215ENST00000488494 IL17REQ8NFR9 667 aa23.69■■□□□ 1.38
ITGB1-215ENST00000488494 NLGN2Q8NFZ4 835 aa23.69■■□□□ 1.38
ITGB1-215ENST00000488494 CEMIPQ8WUJ3 1361 aa23.68■■□□□ 1.38
ITGB1-215ENST00000488494 FCHSD2O94868 740 aa23.68■■□□□ 1.38
ITGB1-215ENST00000488494 ADRA2BP18089 450 aa23.68■■□□□ 1.38
ITGB1-215ENST00000488494 RPS6KA4O75676 772 aa23.67■■□□□ 1.38
ITGB1-215ENST00000488494 TRAPPC3LQ5T215 181 aa23.67■■□□□ 1.38
ITGB1-215ENST00000488494 DNAJC10Q8IXB1 793 aa23.67■■□□□ 1.38
ITGB1-215ENST00000488494 GOLGB1Q14789 3259 aaKnown RBP23.66■■□□□ 1.38
ITGB1-215ENST00000488494 RALBP1Q15311 655 aa23.65■■□□□ 1.38
ITGB1-215ENST00000488494 TTC5Q8N0Z6 440 aa23.65■■□□□ 1.38
ITGB1-215ENST00000488494 ARHGEF1Q92888 912 aaKnown RBP23.65■■□□□ 1.38
ITGB1-215ENST00000488494 UTRNP46939 3433 aa23.64■■□□□ 1.37
ITGB1-215ENST00000488494 RFC4P35249 363 aa23.63■■□□□ 1.37
ITGB1-215ENST00000488494 INTS5Q6P9B9 1019 aaKnown RBP23.63■■□□□ 1.37
ITGB1-215ENST00000488494 CCDC87Q9NVE4 849 aa23.63■■□□□ 1.37
ITGB1-215ENST00000488494 MMP10P09238 476 aa23.62■■□□□ 1.37
ITGB1-215ENST00000488494 YY1P25490 414 aa23.62■■□□□ 1.37
ITGB1-215ENST00000488494 PELP1Q8IZL8 1130 aaKnown RBP23.62■■□□□ 1.37
ITGB1-215ENST00000488494 CYP19A1P11511 503 aaPredicted RBP23.61■■□□□ 1.37
ITGB1-215ENST00000488494 ZNF790Q6PG37 636 aa23.61■■□□□ 1.37
ITGB1-215ENST00000488494 MCM10Q7L590 875 aa23.61■■□□□ 1.37
ITGB1-215ENST00000488494 VSIG10Q8N0Z9 540 aa23.61■■□□□ 1.37
ITGB1-215ENST00000488494 RTF1Q92541 710 aaKnown RBP23.61■■□□□ 1.37
ITGB1-215ENST00000488494 CD2APQ9Y5K6 639 aa23.61■■□□□ 1.37
ITGB1-215ENST00000488494 GYS1P13807 737 aa23.6■■□□□ 1.37
ITGB1-215ENST00000488494 GPR162Q16538 588 aa23.6■■□□□ 1.37
ITGB1-215ENST00000488494 SOS1Q07889 1333 aaPredicted RBP23.59■■□□□ 1.37
ITGB1-215ENST00000488494 MYBBP1AQ9BQG0 1328 aaKnown RBP23.59■■□□□ 1.37
ITGB1-215ENST00000488494 ZNF496Q96IT1 587 aaPredicted RBP23.59■■□□□ 1.37
ITGB1-215ENST00000488494 SRP68Q9UHB9 627 aaKnown RBP23.59■■□□□ 1.37
ITGB1-215ENST00000488494 HEG1Q9ULI3 1381 aa23.59■■□□□ 1.37
ITGB1-215ENST00000488494 USP42Q9H9J4 1324 aaKnown RBP23.59■■□□□ 1.37
ITGB1-215ENST00000488494 COL15A1P39059 1388 aa23.58■■□□□ 1.37
ITGB1-215ENST00000488494 NEFMP07197 916 aa23.58■■□□□ 1.37
ITGB1-215ENST00000488494 ZEB1P37275 1124 aaPredicted RBP23.58■■□□□ 1.37
ITGB1-215ENST00000488494 NLGN1Q8N2Q7 840 aa23.58■■□□□ 1.37
ITGB1-215ENST00000488494 ZBTB1Q9Y2K1 713 aa23.58■■□□□ 1.37
ITGB1-215ENST00000488494 DLG5Q8TDM6 1919 aa23.57■■□□□ 1.36
ITGB1-215ENST00000488494 BTBD11A6QL63 1104 aa23.57■■□□□ 1.36
ITGB1-215ENST00000488494 DCTN1Q14203 1278 aa23.57■■□□□ 1.36
ITGB1-215ENST00000488494 PLEKHF1Q96S99 279 aa23.56■■□□□ 1.36
ITGB1-215ENST00000488494 C10orf71Q711Q0 1435 aa23.56■■□□□ 1.36
ITGB1-215ENST00000488494 KIF13BQ9NQT8 1826 aa23.55■■□□□ 1.36
ITGB1-215ENST00000488494 KCNQ3O43525 872 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms