RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 C20orf194Q5TEA3 1177 aa18.3■□□□□ 0.52
CUX1-209ENST00000487284 CFAP44Q96MT7 982 aa18.3■□□□□ 0.52
CUX1-209ENST00000487284 RGS17Q9UGC6 210 aaPredicted RBP18.3■□□□□ 0.52
CUX1-209ENST00000487284 TOGARAM1Q9Y4F4 1720 aa18.29■□□□□ 0.52
CUX1-209ENST00000487284 RNMTO43148 476 aaKnown RBP18.29■□□□□ 0.52
CUX1-209ENST00000487284 B4GALNT3Q6L9W6 998 aa18.29■□□□□ 0.52
CUX1-209ENST00000487284 CRBNQ96SW2 442 aa18.29■□□□□ 0.52
CUX1-209ENST00000487284 SIPA1L3O60292 1781 aaPredicted RBP18.28■□□□□ 0.52
CUX1-209ENST00000487284 ONECUT3O60422 494 aaPredicted RBP18.27■□□□□ 0.52
CUX1-209ENST00000487284 HSP90AB1P08238 724 aaKnown RBP18.27■□□□□ 0.52
CUX1-209ENST00000487284 NKX1-1Q15270 411 aaPredicted RBP18.27■□□□□ 0.52
CUX1-209ENST00000487284 DCAF5Q96JK2 942 aa18.27■□□□□ 0.52
CUX1-209ENST00000487284 RBM6P78332 1123 aaKnown RBP18.26■□□□□ 0.51
CUX1-209ENST00000487284 PDE3AQ14432 1141 aa18.26■□□□□ 0.51
CUX1-209ENST00000487284 MBIPQ9NS73 344 aa18.26■□□□□ 0.51
CUX1-209ENST00000487284 LAS1LQ9Y4W2 734 aaKnown RBP18.26■□□□□ 0.51
CUX1-209ENST00000487284 MARCH10Q8NA82 808 aaPredicted RBP18.25■□□□□ 0.51
CUX1-209ENST00000487284 ZNF428Q96B54 188 aa18.25■□□□□ 0.51
CUX1-209ENST00000487284 CCDC136Q96JN2 1154 aa18.25■□□□□ 0.51
CUX1-209ENST00000487284 MRC1P22897 1456 aa18.25■□□□□ 0.51
CUX1-209ENST00000487284 TEFQ10587 303 aa18.25■□□□□ 0.51
CUX1-209ENST00000487284 SEPT12Q8IYM1 358 aa18.25■□□□□ 0.51
CUX1-209ENST00000487284 BRWD3Q6RI45 1802 aa18.24■□□□□ 0.51
CUX1-209ENST00000487284 DOT1LQ8TEK3 1739 aa18.24■□□□□ 0.51
CUX1-209ENST00000487284 POTEAQ6S8J7 498 aa18.24■□□□□ 0.51
CUX1-209ENST00000487284 CHL1O00533 1208 aa18.23■□□□□ 0.51
CUX1-209ENST00000487284 KAT6BQ8WYB5 2073 aa18.23■□□□□ 0.51
CUX1-209ENST00000487284 KDM3BQ7LBC6 1761 aa18.23■□□□□ 0.51
CUX1-209ENST00000487284 ITGB4P16144 1822 aa18.23■□□□□ 0.51
CUX1-209ENST00000487284 TAF7Q15545 349 aaPredicted RBP18.22■□□□□ 0.51
CUX1-209ENST00000487284 ALDH1L2Q3SY69 923 aa18.22■□□□□ 0.51
CUX1-209ENST00000487284 MIS18AQ9NYP9 233 aa18.22■□□□□ 0.51
CUX1-209ENST00000487284 CANXP27824 592 aaKnown RBP18.21■□□□□ 0.51
CUX1-209ENST00000487284 SSH1Q8WYL5 1049 aa18.21■□□□□ 0.51
CUX1-209ENST00000487284 BCL2L13Q9BXK5 485 aa18.21■□□□□ 0.51
CUX1-209ENST00000487284 SLC52A2Q9HAB3 445 aa18.21■□□□□ 0.51
CUX1-209ENST00000487284 SMC4Q9NTJ3 1288 aa18.21■□□□□ 0.51
CUX1-209ENST00000487284 CACNA1FO60840 1977 aa18.21■□□□□ 0.51
CUX1-209ENST00000487284 RXRBP28702 533 aa18.21■□□□□ 0.51
CUX1-209ENST00000487284 NFATC2IPQ8NCF5 419 aa18.21■□□□□ 0.51
CUX1-209ENST00000487284 ERVV-2B6SEH9 535 aa18.2■□□□□ 0.5
CUX1-209ENST00000487284 VAMP4O75379 141 aa18.2■□□□□ 0.5
CUX1-209ENST00000487284 BRPF1P55201 1214 aaPredicted RBP18.2■□□□□ 0.5
CUX1-209ENST00000487284 CABP4P57796 275 aa18.2■□□□□ 0.5
CUX1-209ENST00000487284 FRAT1Q92837 279 aaPredicted RBP18.2■□□□□ 0.5
CUX1-209ENST00000487284 TSPYL4Q9UJ04 414 aa18.2■□□□□ 0.5
CUX1-209ENST00000487284 KIF16BQ96L93 1317 aa18.19■□□□□ 0.5
CUX1-209ENST00000487284 BTBD11A6QL63 1104 aa18.18■□□□□ 0.5
CUX1-209ENST00000487284 FAM182BQ5T319 152 aa18.18■□□□□ 0.5
CUX1-209ENST00000487284 TSPYL6Q8N831 410 aa18.18■□□□□ 0.5
CUX1-209ENST00000487284 RGS12O14924 1447 aa18.18■□□□□ 0.5
CUX1-209ENST00000487284 TWISTNBQ3B726 338 aaPredicted RBP18.17■□□□□ 0.5
CUX1-209ENST00000487284 ZKSCAN2Q63HK3 967 aa18.17■□□□□ 0.5
CUX1-209ENST00000487284 C8orf58Q8NAV2 365 aa18.17■□□□□ 0.5
CUX1-209ENST00000487284 PAPPAQ13219 1627 aa18.17■□□□□ 0.5
CUX1-209ENST00000487284 PANK1Q8TE04 598 aa18.17■□□□□ 0.5
CUX1-209ENST00000487284 ACSBG1Q96GR2 724 aa18.17■□□□□ 0.5
CUX1-209ENST00000487284 BABAM1Q9NWV8 329 aa18.17■□□□□ 0.5
CUX1-209ENST00000487284 KCNQ3O43525 872 aa18.16■□□□□ 0.5
CUX1-209ENST00000487284 MS4A1P11836 297 aa18.16■□□□□ 0.5
CUX1-209ENST00000487284 TMOD3Q9NYL9 352 aa18.16■□□□□ 0.5
CUX1-209ENST00000487284 SLC39A6Q13433 755 aa18.15■□□□□ 0.5
CUX1-209ENST00000487284 SYTL4Q96C24 671 aaPredicted RBP18.15■□□□□ 0.5
CUX1-209ENST00000487284 SBF2Q86WG5 1849 aa18.15■□□□□ 0.5
CUX1-209ENST00000487284 EP400Q96L91 3159 aa18.15■□□□□ 0.5
CUX1-209ENST00000487284 BCL9O00512 1426 aa18.14■□□□□ 0.5
CUX1-209ENST00000487284 RLBP1P12271 317 aa18.14■□□□□ 0.49
CUX1-209ENST00000487284 PRIM1P49642 420 aaKnown RBP18.14■□□□□ 0.49
CUX1-209ENST00000487284 KRT24Q2M2I5 525 aa18.14■□□□□ 0.49
CUX1-209ENST00000487284 KRT27Q7Z3Y8 459 aa18.14■□□□□ 0.49
CUX1-209ENST00000487284 TNNQ9UQP3 1299 aa18.14■□□□□ 0.49
CUX1-209ENST00000487284 NHSQ6T4R5 1651 aa18.13■□□□□ 0.49
CUX1-209ENST00000487284 AAMPQ13685 434 aa18.13■□□□□ 0.49
CUX1-209ENST00000487284 ATF7IPQ6VMQ6 1270 aa18.13■□□□□ 0.49
CUX1-209ENST00000487284 PIGBQ92521 554 aa18.13■□□□□ 0.49
CUX1-209ENST00000487284 COG6Q9Y2V7 657 aa18.13■□□□□ 0.49
CUX1-209ENST00000487284 UBR2Q8IWV8 1755 aa18.13■□□□□ 0.49
CUX1-209ENST00000487284 IPO8O15397 1037 aaKnown RBP18.13■□□□□ 0.49
CUX1-209ENST00000487284 TRIM27P14373 513 aa18.13■□□□□ 0.49
CUX1-209ENST00000487284 ZNF790Q6PG37 636 aa18.13■□□□□ 0.49
CUX1-209ENST00000487284 DZIP1LQ8IYY4 767 aaKnown RBP18.13■□□□□ 0.49
CUX1-209ENST00000487284 MRPL50Q8N5N7 158 aaKnown RBP18.13■□□□□ 0.49
CUX1-209ENST00000487284 ELL2O00472 640 aaPredicted RBP18.12■□□□□ 0.49
CUX1-209ENST00000487284 KCNQ2O43526 872 aa18.12■□□□□ 0.49
CUX1-209ENST00000487284 EIF4A1P60842 406 aaKnown RBP18.12■□□□□ 0.49
CUX1-209ENST00000487284 NOB1Q9ULX3 412 aaKnown RBP18.12■□□□□ 0.49
CUX1-209ENST00000487284 MVPQ14764 893 aaKnown RBP18.1■□□□□ 0.49
CUX1-209ENST00000487284 TTC5Q8N0Z6 440 aa18.1■□□□□ 0.49
CUX1-209ENST00000487284 ARHGAP45Q92619 1136 aa18.1■□□□□ 0.49
CUX1-209ENST00000487284 KCPQ6ZWJ8 1503 aa18.1■□□□□ 0.49
CUX1-209ENST00000487284 N4BP2Q86UW6 1770 aaPredicted RBP18.1■□□□□ 0.49
CUX1-209ENST00000487284 KDM2BQ8NHM5 1336 aa18.1■□□□□ 0.49
CUX1-209ENST00000487284 FTSJ3Q8IY81 847 aaKnown RBP18.09■□□□□ 0.49
CUX1-209ENST00000487284 CLUAP1Q96AJ1 413 aa18.09■□□□□ 0.49
CUX1-209ENST00000487284 BTAF1O14981 1849 aa18.09■□□□□ 0.49
CUX1-209ENST00000487284 SOS1Q07889 1333 aaPredicted RBP18.09■□□□□ 0.49
CUX1-209ENST00000487284 C5P01031 1676 aa18.09■□□□□ 0.49
CUX1-209ENST00000487284 PTF1AQ7RTS3 328 aa18.08■□□□□ 0.49
CUX1-209ENST00000487284 ASAP1Q9ULH1 1129 aa18.08■□□□□ 0.49
CUX1-209ENST00000487284 ZNF496Q96IT1 587 aaPredicted RBP18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms