RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 IL13P35225 146 aa16.49■□□□□ 0.23
SQSTM1-207ENST00000481335 ZNF530Q6P9A1 599 aaPredicted RBP16.49■□□□□ 0.23
SQSTM1-207ENST00000481335 C1orf141Q5JVX7 400 aa16.48■□□□□ 0.23
SQSTM1-207ENST00000481335 ATG3Q9NT62 314 aa16.48■□□□□ 0.23
SQSTM1-207ENST00000481335 ASAP1Q9ULH1 1129 aa16.48■□□□□ 0.23
SQSTM1-207ENST00000481335 ATP6V1AP38606 617 aa16.47■□□□□ 0.23
SQSTM1-207ENST00000481335 SULT6B1Q6IMI4 303 aa16.47■□□□□ 0.23
SQSTM1-207ENST00000481335 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.46■□□□□ 0.23
SQSTM1-207ENST00000481335 AEBP1Q8IUX7 1158 aa16.46■□□□□ 0.23
SQSTM1-207ENST00000481335 LINC00116Q8NCU8 138 aa16.46■□□□□ 0.23
SQSTM1-207ENST00000481335 CD2APQ9Y5K6 639 aa16.46■□□□□ 0.23
SQSTM1-207ENST00000481335 MTHFSP49914 203 aa16.45■□□□□ 0.22
SQSTM1-207ENST00000481335 KLHL34Q8N239 644 aa16.45■□□□□ 0.22
SQSTM1-207ENST00000481335 ADAMTS7Q9UKP4 1686 aa16.45■□□□□ 0.22
SQSTM1-207ENST00000481335 MRC1P22897 1456 aa16.44■□□□□ 0.22
SQSTM1-207ENST00000481335 CABP4P57796 275 aa16.44■□□□□ 0.22
SQSTM1-207ENST00000481335 ITPK1Q13572 414 aa16.44■□□□□ 0.22
SQSTM1-207ENST00000481335 GPR162Q16538 588 aa16.44■□□□□ 0.22
SQSTM1-207ENST00000481335 RC3H1Q5TC82 1133 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-207ENST00000481335 CNTNAP4Q9C0A0 1308 aa16.44■□□□□ 0.22
SQSTM1-207ENST00000481335 GNPATO15228 680 aa16.43■□□□□ 0.22
SQSTM1-207ENST00000481335 ADRA2BP18089 450 aa16.43■□□□□ 0.22
SQSTM1-207ENST00000481335 AKAP4Q5JQC9 854 aa16.43■□□□□ 0.22
SQSTM1-207ENST00000481335 KIF13BQ9NQT8 1826 aa16.42■□□□□ 0.22
SQSTM1-207ENST00000481335 MYH14Q7Z406 1995 aaKnown RBP16.42■□□□□ 0.22
SQSTM1-207ENST00000481335 PHF14O94880 888 aa16.42■□□□□ 0.22
SQSTM1-207ENST00000481335 MSL1Q68DK7 614 aa16.42■□□□□ 0.22
SQSTM1-207ENST00000481335 C4AP0C0L4 1744 aa16.42■□□□□ 0.22
SQSTM1-207ENST00000481335 COL3A1P02461 1466 aaPredicted RBP16.42■□□□□ 0.22
SQSTM1-207ENST00000481335 GRIN3BO60391 1043 aa16.41■□□□□ 0.22
SQSTM1-207ENST00000481335 DIAPH1O60610 1272 aaKnown RBP16.41■□□□□ 0.22
SQSTM1-207ENST00000481335 AMIGO3Q86WK7 504 aa16.41■□□□□ 0.22
SQSTM1-207ENST00000481335 NLGN2Q8NFZ4 835 aa16.41■□□□□ 0.22
SQSTM1-207ENST00000481335 RTCBQ9Y3I0 505 aaKnown RBP16.41■□□□□ 0.22
SQSTM1-207ENST00000481335 TJP1Q07157 1748 aa16.41■□□□□ 0.22
SQSTM1-207ENST00000481335 CC2D1BQ5T0F9 858 aaKnown RBP16.4■□□□□ 0.22
SQSTM1-207ENST00000481335 SLC4A9Q96Q91 983 aa16.39■□□□□ 0.21
SQSTM1-207ENST00000481335 RBM42Q9BTD8 480 aaKnown RBP16.39■□□□□ 0.21
SQSTM1-207ENST00000481335 TRAPPC3LQ5T215 181 aa16.38■□□□□ 0.21
SQSTM1-207ENST00000481335 ZNF784Q8NCA9 323 aaPredicted RBP16.38■□□□□ 0.21
SQSTM1-207ENST00000481335 NFATC2IPQ8NCF5 419 aa16.38■□□□□ 0.21
SQSTM1-207ENST00000481335 UBR2Q8IWV8 1755 aa16.38■□□□□ 0.21
SQSTM1-207ENST00000481335 RPS6KA4O75676 772 aa16.37■□□□□ 0.21
SQSTM1-207ENST00000481335 NLGN1Q8N2Q7 840 aa16.37■□□□□ 0.21
SQSTM1-207ENST00000481335 SLC52A2Q9HAB3 445 aa16.37■□□□□ 0.21
SQSTM1-207ENST00000481335 HMOX1P09601 288 aa16.35■□□□□ 0.21
SQSTM1-207ENST00000481335 PELP1Q8IZL8 1130 aaKnown RBP16.35■□□□□ 0.21
SQSTM1-207ENST00000481335 SIPA1L3O60292 1781 aaPredicted RBP16.34■□□□□ 0.21
SQSTM1-207ENST00000481335 RNMTO43148 476 aaKnown RBP16.34■□□□□ 0.21
SQSTM1-207ENST00000481335 YBX3P16989 372 aaKnown RBP eCLIP16.34■□□□□ 0.21
SQSTM1-207ENST00000481335 KCPQ6ZWJ8 1503 aa16.34■□□□□ 0.21
SQSTM1-207ENST00000481335 KIAA1551Q9HCM1 1747 aa16.33■□□□□ 0.21
SQSTM1-207ENST00000481335 PTCD1O75127 700 aaKnown RBP16.33■□□□□ 0.2
SQSTM1-207ENST00000481335 RFC4P35249 363 aa16.33■□□□□ 0.2
SQSTM1-207ENST00000481335 MTHFSDQ2M296 383 aaKnown RBP16.33■□□□□ 0.2
SQSTM1-207ENST00000481335 GAS2L2Q8NHY3 880 aa16.33■□□□□ 0.2
SQSTM1-207ENST00000481335 ARHGEF1Q92888 912 aaKnown RBP16.33■□□□□ 0.2
SQSTM1-207ENST00000481335 CFAP53Q96M91 514 aa16.33■□□□□ 0.2
SQSTM1-207ENST00000481335 MMP10P09238 476 aa16.32■□□□□ 0.2
SQSTM1-207ENST00000481335 CRKLP46109 303 aaKnown RBP16.32■□□□□ 0.2
SQSTM1-207ENST00000481335 C10orf71Q711Q0 1435 aa16.32■□□□□ 0.2
SQSTM1-207ENST00000481335 VSIG10Q8N0Z9 540 aa16.32■□□□□ 0.2
SQSTM1-207ENST00000481335 BRCA1P38398 1863 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-207ENST00000481335 GYS1P13807 737 aa16.31■□□□□ 0.2
SQSTM1-207ENST00000481335 SMIM5Q71RC9 77 aa16.31■□□□□ 0.2
SQSTM1-207ENST00000481335 U2SURPO15042 1029 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-207ENST00000481335 TGFB2P61812 414 aa16.3■□□□□ 0.2
SQSTM1-207ENST00000481335 LGR6Q9HBX8 967 aa16.3■□□□□ 0.2
SQSTM1-207ENST00000481335 PXDNLA1KZ92 1463 aa16.29■□□□□ 0.2
SQSTM1-207ENST00000481335 USP42Q9H9J4 1324 aaKnown RBP16.29■□□□□ 0.2
SQSTM1-207ENST00000481335 CCDC87Q9NVE4 849 aa16.29■□□□□ 0.2
SQSTM1-207ENST00000481335 NUDCQ9Y266 331 aa16.29■□□□□ 0.2
SQSTM1-207ENST00000481335 N4BP2Q86UW6 1770 aaPredicted RBP16.28■□□□□ 0.2
SQSTM1-207ENST00000481335 GNAT3A8MTJ3 354 aa16.28■□□□□ 0.2
SQSTM1-207ENST00000481335 ARFGEF1Q9Y6D6 1849 aa16.28■□□□□ 0.2
SQSTM1-207ENST00000481335 CEMIPQ8WUJ3 1361 aa16.27■□□□□ 0.2
SQSTM1-207ENST00000481335 INTS5Q6P9B9 1019 aaKnown RBP16.27■□□□□ 0.2
SQSTM1-207ENST00000481335 PARP3Q9Y6F1 533 aa16.27■□□□□ 0.2
SQSTM1-207ENST00000481335 ADCY9O60503 1353 aa16.26■□□□□ 0.19
SQSTM1-207ENST00000481335 SOS1Q07889 1333 aaPredicted RBP16.26■□□□□ 0.19
SQSTM1-207ENST00000481335 CYP19A1P11511 503 aaPredicted RBP16.26■□□□□ 0.19
SQSTM1-207ENST00000481335 TEFQ10587 303 aa16.26■□□□□ 0.19
SQSTM1-207ENST00000481335 DNAJC10Q8IXB1 793 aa16.26■□□□□ 0.19
SQSTM1-207ENST00000481335 TTC5Q8N0Z6 440 aa16.26■□□□□ 0.19
SQSTM1-207ENST00000481335 RSPH6AQ9H0K4 717 aa16.25■□□□□ 0.19
SQSTM1-207ENST00000481335 NRXN2Q9P2S2 1712 aa16.25■□□□□ 0.19
SQSTM1-207ENST00000481335 COL15A1P39059 1388 aa16.25■□□□□ 0.19
SQSTM1-207ENST00000481335 ZPR1O75312 459 aa16.24■□□□□ 0.19
SQSTM1-207ENST00000481335 PPP2R1AP30153 589 aa16.24■□□□□ 0.19
SQSTM1-207ENST00000481335 SLC39A6Q13433 755 aa16.24■□□□□ 0.19
SQSTM1-207ENST00000481335 TEX13AQ9BXU3 409 aaPredicted RBP16.24■□□□□ 0.19
SQSTM1-207ENST00000481335 GIGYF1O75420 1035 aaPredicted RBP16.23■□□□□ 0.19
SQSTM1-207ENST00000481335 FCHSD2O94868 740 aa16.23■□□□□ 0.19
SQSTM1-207ENST00000481335 STARD3NLO95772 234 aa16.23■□□□□ 0.19
SQSTM1-207ENST00000481335 PRKAR2BP31323 418 aa16.23■□□□□ 0.19
SQSTM1-207ENST00000481335 ZNF790Q6PG37 636 aa16.23■□□□□ 0.19
SQSTM1-207ENST00000481335 AFDNP55196 1824 aaKnown RBP16.23■□□□□ 0.19
SQSTM1-207ENST00000481335 HEG1Q9ULI3 1381 aa16.23■□□□□ 0.19
SQSTM1-207ENST00000481335 ATP10DQ9P241 1426 aa16.22■□□□□ 0.19
SQSTM1-207ENST00000481335 SCN7AQ01118 1682 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms