RNA–Protein interactions for RNA: ENST00000478914.1

XRCC6-208, Transcript of X-ray repair cross complementing 6, human

TSL 2

Gene XRCC6, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
XRCC6-208	ENST00000478914	ATP6V1A	P38606	617 aa		11.83	□□□□□ -0.52
XRCC6-208	ENST00000478914	MTHFS	P49914	203 aa		11.83	□□□□□ -0.52
XRCC6-208	ENST00000478914	CABP4	P57796	275 aa		11.83	□□□□□ -0.52
XRCC6-208	ENST00000478914	GPR162	Q16538	588 aa		11.83	□□□□□ -0.52
XRCC6-208	ENST00000478914	MSL1	Q68DK7	614 aa		11.83	□□□□□ -0.52
XRCC6-208	ENST00000478914	AEBP1	Q8IUX7	1158 aa		11.83	□□□□□ -0.52
XRCC6-208	ENST00000478914	COL5A3	P25940	1745 aa	Predicted RBP	11.83	□□□□□ -0.52
XRCC6-208	ENST00000478914	CNGB1	Q14028	1251 aa	Predicted RBP	11.82	□□□□□ -0.52
XRCC6-208	ENST00000478914	RBM42	Q9BTD8	480 aa	Known RBP	11.82	□□□□□ -0.52
XRCC6-208	ENST00000478914	ATG3	Q9NT62	314 aa		11.82	□□□□□ -0.52
XRCC6-208	ENST00000478914	KDR	P35968	1356 aa		11.81	□□□□□ -0.52
XRCC6-208	ENST00000478914	KDM6A	O15550	1401 aa	Predicted RBP	11.81	□□□□□ -0.52
XRCC6-208	ENST00000478914	PER1	O15534	1290 aa	Predicted RBP	11.81	□□□□□ -0.52
XRCC6-208	ENST00000478914	SSFA2	P28290	1259 aa		11.81	□□□□□ -0.52
XRCC6-208	ENST00000478914	PELP1	Q8IZL8	1130 aa	Known RBP	11.81	□□□□□ -0.52
XRCC6-208	ENST00000478914	LINC00116	Q8NCU8	138 aa		11.81	□□□□□ -0.52
XRCC6-208	ENST00000478914	NPC1L1	Q9UHC9	1359 aa		11.8	□□□□□ -0.52
XRCC6-208	ENST00000478914	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.8	□□□□□ -0.52
XRCC6-208	ENST00000478914	GNPAT	O15228	680 aa		11.8	□□□□□ -0.52
XRCC6-208	ENST00000478914	DIAPH1	O60610	1272 aa	Known RBP	11.8	□□□□□ -0.52
XRCC6-208	ENST00000478914	HMOX1	P09601	288 aa		11.79	□□□□□ -0.52
XRCC6-208	ENST00000478914	ITPK1	Q13572	414 aa		11.79	□□□□□ -0.52
XRCC6-208	ENST00000478914	AKAP4	Q5JQC9	854 aa		11.79	□□□□□ -0.52
XRCC6-208	ENST00000478914	ZNF784	Q8NCA9	323 aa	Predicted RBP	11.78	□□□□□ -0.52
XRCC6-208	ENST00000478914	RTCB	Q9Y3I0	505 aa	Known RBP	11.78	□□□□□ -0.52
XRCC6-208	ENST00000478914	MYH14	Q7Z406	1995 aa	Known RBP	11.78	□□□□□ -0.52
XRCC6-208	ENST00000478914	C4A	P0C0L4	1744 aa		11.77	□□□□□ -0.52
XRCC6-208	ENST00000478914	NFATC2IP	Q8NCF5	419 aa		11.77	□□□□□ -0.53
XRCC6-208	ENST00000478914	NLGN2	Q8NFZ4	835 aa		11.77	□□□□□ -0.53
XRCC6-208	ENST00000478914	CIC	Q96RK0	1608 aa	Predicted RBP	11.77	□□□□□ -0.53
XRCC6-208	ENST00000478914	TJP1	Q07157	1748 aa		11.77	□□□□□ -0.53
XRCC6-208	ENST00000478914	U2SURP	O15042	1029 aa	Known RBP	11.76	□□□□□ -0.53
XRCC6-208	ENST00000478914	PTCD1	O75127	700 aa	Known RBP	11.76	□□□□□ -0.53
XRCC6-208	ENST00000478914	TRAPPC3L	Q5T215	181 aa		11.76	□□□□□ -0.53
XRCC6-208	ENST00000478914	RC3H1	Q5TC82	1133 aa	Known RBP	11.76	□□□□□ -0.53
XRCC6-208	ENST00000478914	SMIM5	Q71RC9	77 aa		11.76	□□□□□ -0.53
XRCC6-208	ENST00000478914	AMIGO3	Q86WK7	504 aa		11.76	□□□□□ -0.53
XRCC6-208	ENST00000478914	CFAP53	Q96M91	514 aa		11.76	□□□□□ -0.53
XRCC6-208	ENST00000478914	CD2AP	Q9Y5K6	639 aa		11.76	□□□□□ -0.53
XRCC6-208	ENST00000478914	ADRA2B	P18089	450 aa		11.75	□□□□□ -0.53
XRCC6-208	ENST00000478914	CNTNAP4	Q9C0A0	1308 aa		11.75	□□□□□ -0.53
XRCC6-208	ENST00000478914	ADAMTS7	Q9UKP4	1686 aa		11.75	□□□□□ -0.53
XRCC6-208	ENST00000478914	RNMT	O43148	476 aa	Known RBP	11.74	□□□□□ -0.53
XRCC6-208	ENST00000478914	GRIN3B	O60391	1043 aa		11.74	□□□□□ -0.53
XRCC6-208	ENST00000478914	RFC4	P35249	363 aa		11.74	□□□□□ -0.53
XRCC6-208	ENST00000478914	SLC4A9	Q96Q91	983 aa		11.74	□□□□□ -0.53
XRCC6-208	ENST00000478914	SLC52A2	Q9HAB3	445 aa		11.74	□□□□□ -0.53
XRCC6-208	ENST00000478914	COL3A1	P02461	1466 aa	Predicted RBP	11.74	□□□□□ -0.53
XRCC6-208	ENST00000478914	MRC1	P22897	1456 aa		11.74	□□□□□ -0.53
XRCC6-208	ENST00000478914	KIF13B	Q9NQT8	1826 aa		11.74	□□□□□ -0.53
XRCC6-208	ENST00000478914	SENP3-EIF4A1	A0A087X0R7	540 aa		11.73	□□□□□ -0.53
XRCC6-208	ENST00000478914	RPS6KA4	O75676	772 aa		11.73	□□□□□ -0.53
XRCC6-208	ENST00000478914	MTHFSD	Q2M296	383 aa	Known RBP	11.73	□□□□□ -0.53
XRCC6-208	ENST00000478914	NLGN1	Q8N2Q7	840 aa		11.73	□□□□□ -0.53
XRCC6-208	ENST00000478914	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.72	□□□□□ -0.53
XRCC6-208	ENST00000478914	UBR2	Q8IWV8	1755 aa		11.72	□□□□□ -0.53
XRCC6-208	ENST00000478914	CRKL	P46109	303 aa	Known RBP	11.72	□□□□□ -0.53
XRCC6-208	ENST00000478914	GAS2L2	Q8NHY3	880 aa		11.72	□□□□□ -0.53
XRCC6-208	ENST00000478914	LGR6	Q9HBX8	967 aa		11.72	□□□□□ -0.53
XRCC6-208	ENST00000478914	NUDC	Q9Y266	331 aa		11.72	□□□□□ -0.53
XRCC6-208	ENST00000478914	SIPA1L3	O60292	1781 aa	Predicted RBP	11.72	□□□□□ -0.53
XRCC6-208	ENST00000478914	UTRN	P46939	3433 aa		11.71	□□□□□ -0.53
XRCC6-208	ENST00000478914	MMP10	P09238	476 aa		11.71	□□□□□ -0.53
XRCC6-208	ENST00000478914	YBX3	P16989	372 aa	Known RBP eCLIP	11.71	□□□□□ -0.53
XRCC6-208	ENST00000478914	ARHGEF1	Q92888	912 aa	Known RBP	11.71	□□□□□ -0.53
XRCC6-208	ENST00000478914	TEF	Q10587	303 aa		11.7	□□□□□ -0.54
XRCC6-208	ENST00000478914	TTC5	Q8N0Z6	440 aa		11.7	□□□□□ -0.54
XRCC6-208	ENST00000478914	PARP3	Q9Y6F1	533 aa		11.7	□□□□□ -0.54
XRCC6-208	ENST00000478914	GNAT3	A8MTJ3	354 aa		11.69	□□□□□ -0.54
XRCC6-208	ENST00000478914	C1QTNF8	P60827	252 aa		11.69	□□□□□ -0.54
XRCC6-208	ENST00000478914	SLC39A6	Q13433	755 aa		11.69	□□□□□ -0.54
XRCC6-208	ENST00000478914	DNAJC10	Q8IXB1	793 aa		11.69	□□□□□ -0.54
XRCC6-208	ENST00000478914	CCDC87	Q9NVE4	849 aa		11.69	□□□□□ -0.54
XRCC6-208	ENST00000478914	KCP	Q6ZWJ8	1503 aa		11.69	□□□□□ -0.54
XRCC6-208	ENST00000478914	GYS1	P13807	737 aa		11.68	□□□□□ -0.54
XRCC6-208	ENST00000478914	PPP2R1A	P30153	589 aa		11.68	□□□□□ -0.54
XRCC6-208	ENST00000478914	PRKAR2B	P31323	418 aa		11.68	□□□□□ -0.54
XRCC6-208	ENST00000478914	KIAA1551	Q9HCM1	1747 aa		11.68	□□□□□ -0.54
XRCC6-208	ENST00000478914	USP42	Q9H9J4	1324 aa	Known RBP	11.67	□□□□□ -0.54
XRCC6-208	ENST00000478914	ZPR1	O75312	459 aa		11.67	□□□□□ -0.54
XRCC6-208	ENST00000478914	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.67	□□□□□ -0.54
XRCC6-208	ENST00000478914	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.67	□□□□□ -0.54
XRCC6-208	ENST00000478914	VSIG10	Q8N0Z9	540 aa		11.67	□□□□□ -0.54
XRCC6-208	ENST00000478914	WWC3	Q9ULE0	1092 aa		11.67	□□□□□ -0.54
XRCC6-208	ENST00000478914	BRCA1	P38398	1863 aa	Known RBP	11.67	□□□□□ -0.54
XRCC6-208	ENST00000478914	DLG5	Q8TDM6	1919 aa		11.66	□□□□□ -0.54
XRCC6-208	ENST00000478914	AFDN	P55196	1824 aa	Known RBP	11.66	□□□□□ -0.54
XRCC6-208	ENST00000478914	NEFM	P07197	916 aa		11.66	□□□□□ -0.54
XRCC6-208	ENST00000478914	CYP19A1	P11511	503 aa	Predicted RBP	11.66	□□□□□ -0.54
XRCC6-208	ENST00000478914	TGFB2	P61812	414 aa		11.66	□□□□□ -0.54
XRCC6-208	ENST00000478914	INTS5	Q6P9B9	1019 aa	Known RBP	11.66	□□□□□ -0.54
XRCC6-208	ENST00000478914	RSPH6A	Q9H0K4	717 aa		11.66	□□□□□ -0.54
XRCC6-208	ENST00000478914	SRP68	Q9UHB9	627 aa	Known RBP	11.66	□□□□□ -0.54
XRCC6-208	ENST00000478914	C10orf71	Q711Q0	1435 aa		11.66	□□□□□ -0.54
XRCC6-208	ENST00000478914	COL15A1	P39059	1388 aa		11.66	□□□□□ -0.54
XRCC6-208	ENST00000478914	ARFGEF1	Q9Y6D6	1849 aa		11.65	□□□□□ -0.54
XRCC6-208	ENST00000478914	PXDNL	A1KZ92	1463 aa		11.65	□□□□□ -0.54
XRCC6-208	ENST00000478914	STARD3NL	O95772	234 aa		11.65	□□□□□ -0.54
XRCC6-208	ENST00000478914	RTF1	Q92541	710 aa	Known RBP	11.65	□□□□□ -0.54
XRCC6-208	ENST00000478914	SOS1	Q07889	1333 aa	Predicted RBP	11.64	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms