RNA–Protein interactions for RNA: ENST00000478603.5

C9orf3-216, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-216ENST00000478603 DCAF5Q96JK2 942 aa31.07■■■□□ 2.56
C9orf3-216ENST00000478603 UTRNP46939 3433 aa31.07■■■□□ 2.56
C9orf3-216ENST00000478603 CHD4Q14839 1912 aa31.06■■■□□ 2.56
C9orf3-216ENST00000478603 ERVV-2B6SEH9 535 aa31.06■■■□□ 2.56
C9orf3-216ENST00000478603 HSP90AB1P08238 724 aaKnown RBP31.06■■■□□ 2.56
C9orf3-216ENST00000478603 ATP6V1AP38606 617 aa31.06■■■□□ 2.56
C9orf3-216ENST00000478603 CC2D1BQ5T0F9 858 aaKnown RBP31.06■■■□□ 2.56
C9orf3-216ENST00000478603 MTHFSP49914 203 aa31.05■■■□□ 2.56
C9orf3-216ENST00000478603 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.04■■■□□ 2.56
C9orf3-216ENST00000478603 KDRP35968 1356 aa31.04■■■□□ 2.56
C9orf3-216ENST00000478603 GPR162Q16538 588 aa31.03■■■□□ 2.56
C9orf3-216ENST00000478603 C1orf141Q5JVX7 400 aa31.02■■■□□ 2.56
C9orf3-216ENST00000478603 CNGB1Q14028 1251 aaPredicted RBP31.01■■■□□ 2.55
C9orf3-216ENST00000478603 PELP1Q8IZL8 1130 aaKnown RBP31.01■■■□□ 2.55
C9orf3-216ENST00000478603 CABP4P57796 275 aa31■■■□□ 2.55
C9orf3-216ENST00000478603 SLC4A9Q96Q91 983 aa31■■■□□ 2.55
C9orf3-216ENST00000478603 RBM42Q9BTD8 480 aaKnown RBP31■■■□□ 2.55
C9orf3-216ENST00000478603 GNPATO15228 680 aa30.99■■■□□ 2.55
C9orf3-216ENST00000478603 SSFA2P28290 1259 aa30.99■■■□□ 2.55
C9orf3-216ENST00000478603 SCN11AQ9UI33 1791 aa30.97■■■□□ 2.55
C9orf3-216ENST00000478603 HMOX1P09601 288 aa30.96■■■□□ 2.55
C9orf3-216ENST00000478603 ZNF831Q5JPB2 1677 aa30.96■■■□□ 2.55
C9orf3-216ENST00000478603 COL5A3P25940 1745 aaPredicted RBP30.95■■■□□ 2.54
C9orf3-216ENST00000478603 NFATC2IPQ8NCF5 419 aa30.94■■■□□ 2.54
C9orf3-216ENST00000478603 VIRMAQ69YN4 1812 aaKnown RBP30.92■■■□□ 2.54
C9orf3-216ENST00000478603 DIAPH1O60610 1272 aaKnown RBP30.91■■■□□ 2.54
C9orf3-216ENST00000478603 NPC1L1Q9UHC9 1359 aa30.91■■■□□ 2.54
C9orf3-216ENST00000478603 MYH14Q7Z406 1995 aaKnown RBP30.9■■■□□ 2.54
C9orf3-216ENST00000478603 PTCD1O75127 700 aaKnown RBP30.9■■■□□ 2.54
C9orf3-216ENST00000478603 AKAP4Q5JQC9 854 aa30.9■■■□□ 2.54
C9orf3-216ENST00000478603 ZNF784Q8NCA9 323 aaPredicted RBP30.9■■■□□ 2.54
C9orf3-216ENST00000478603 CD2APQ9Y5K6 639 aa30.9■■■□□ 2.54
C9orf3-216ENST00000478603 GOLGB1Q14789 3259 aaKnown RBP30.9■■■□□ 2.54
C9orf3-216ENST00000478603 YBX3P16989 372 aaKnown RBP eCLIP30.89■■■□□ 2.54
C9orf3-216ENST00000478603 RTCBQ9Y3I0 505 aaKnown RBP30.88■■■□□ 2.53
C9orf3-216ENST00000478603 LGR6Q9HBX8 967 aa30.87■■■□□ 2.53
C9orf3-216ENST00000478603 COL3A1P02461 1466 aaPredicted RBP30.87■■■□□ 2.53
C9orf3-216ENST00000478603 CNTNAP4Q9C0A0 1308 aa30.85■■■□□ 2.53
C9orf3-216ENST00000478603 TRAPPC3LQ5T215 181 aa30.85■■■□□ 2.53
C9orf3-216ENST00000478603 RC3H1Q5TC82 1133 aaKnown RBP30.85■■■□□ 2.53
C9orf3-216ENST00000478603 TJP1Q07157 1748 aa30.84■■■□□ 2.53
C9orf3-216ENST00000478603 MTHFSDQ2M296 383 aaKnown RBP30.84■■■□□ 2.53
C9orf3-216ENST00000478603 RNMTO43148 476 aaKnown RBP30.82■■■□□ 2.52
C9orf3-216ENST00000478603 ARHGEF1Q92888 912 aaKnown RBP30.82■■■□□ 2.52
C9orf3-216ENST00000478603 SLC52A2Q9HAB3 445 aa30.82■■■□□ 2.52
C9orf3-216ENST00000478603 RPS6KA4O75676 772 aa30.81■■■□□ 2.52
C9orf3-216ENST00000478603 C4AP0C0L4 1744 aa30.81■■■□□ 2.52
C9orf3-216ENST00000478603 U2SURPO15042 1029 aaKnown RBP30.8■■■□□ 2.52
C9orf3-216ENST00000478603 MMP10P09238 476 aa30.8■■■□□ 2.52
C9orf3-216ENST00000478603 MRC1P22897 1456 aa30.8■■■□□ 2.52
C9orf3-216ENST00000478603 GRIN3BO60391 1043 aa30.79■■■□□ 2.52
C9orf3-216ENST00000478603 WWC3Q9ULE0 1092 aa30.79■■■□□ 2.52
C9orf3-216ENST00000478603 CICQ96RK0 1608 aaPredicted RBP30.78■■■□□ 2.52
C9orf3-216ENST00000478603 ADRA2BP18089 450 aa30.78■■■□□ 2.52
C9orf3-216ENST00000478603 CRKLP46109 303 aaKnown RBP30.78■■■□□ 2.52
C9orf3-216ENST00000478603 ADAMTS7Q9UKP4 1686 aa30.78■■■□□ 2.52
C9orf3-216ENST00000478603 RFC4P35249 363 aa30.77■■■□□ 2.52
C9orf3-216ENST00000478603 SLC39A6Q13433 755 aa30.77■■■□□ 2.52
C9orf3-216ENST00000478603 GYS1P13807 737 aa30.74■■■□□ 2.51
C9orf3-216ENST00000478603 NLGN1Q8N2Q7 840 aa30.74■■■□□ 2.51
C9orf3-216ENST00000478603 DNAJC10Q8IXB1 793 aa30.73■■■□□ 2.51
C9orf3-216ENST00000478603 KIF13BQ9NQT8 1826 aa30.73■■■□□ 2.51
C9orf3-216ENST00000478603 INTS5Q6P9B9 1019 aaKnown RBP30.71■■■□□ 2.51
C9orf3-216ENST00000478603 SRP68Q9UHB9 627 aaKnown RBP30.71■■■□□ 2.51
C9orf3-216ENST00000478603 KCPQ6ZWJ8 1503 aa30.71■■■□□ 2.51
C9orf3-216ENST00000478603 N4BP2Q86UW6 1770 aaPredicted RBP30.69■■■□□ 2.5
C9orf3-216ENST00000478603 KIAA1551Q9HCM1 1747 aa30.69■■■□□ 2.5
C9orf3-216ENST00000478603 CFAP53Q96M91 514 aa30.68■■■□□ 2.5
C9orf3-216ENST00000478603 UBR2Q8IWV8 1755 aa30.66■■■□□ 2.5
C9orf3-216ENST00000478603 PXDNLA1KZ92 1463 aa30.66■■■□□ 2.5
C9orf3-216ENST00000478603 PPP2R1AP30153 589 aa30.66■■■□□ 2.5
C9orf3-216ENST00000478603 GAS2L2Q8NHY3 880 aa30.66■■■□□ 2.5
C9orf3-216ENST00000478603 CCDC87Q9NVE4 849 aa30.66■■■□□ 2.5
C9orf3-216ENST00000478603 USP42Q9H9J4 1324 aaKnown RBP30.66■■■□□ 2.5
C9orf3-216ENST00000478603 CYP19A1P11511 503 aaPredicted RBP30.65■■■□□ 2.5
C9orf3-216ENST00000478603 PARP3Q9Y6F1 533 aa30.65■■■□□ 2.5
C9orf3-216ENST00000478603 C10orf71Q711Q0 1435 aa30.64■■■□□ 2.5
C9orf3-216ENST00000478603 GNAT3A8MTJ3 354 aa30.64■■■□□ 2.5
C9orf3-216ENST00000478603 FKBP8Q14318 412 aa30.64■■■□□ 2.5
C9orf3-216ENST00000478603 IL17REQ8NFR9 667 aa30.64■■■□□ 2.5
C9orf3-216ENST00000478603 PRKAR2BP31323 418 aa30.63■■■□□ 2.49
C9orf3-216ENST00000478603 PHACTR3Q96KR7 559 aa30.63■■■□□ 2.49
C9orf3-216ENST00000478603 RSPH6AQ9H0K4 717 aa30.63■■■□□ 2.49
C9orf3-216ENST00000478603 SIPA1L3O60292 1781 aaPredicted RBP30.63■■■□□ 2.49
C9orf3-216ENST00000478603 SOS1Q07889 1333 aaPredicted RBP30.62■■■□□ 2.49
C9orf3-216ENST00000478603 A0A0G2JLW4 131 aa30.61■■■□□ 2.49
C9orf3-216ENST00000478603 TGFB2P61812 414 aa30.6■■■□□ 2.49
C9orf3-216ENST00000478603 TEFQ10587 303 aa30.6■■■□□ 2.49
C9orf3-216ENST00000478603 ZBTB1Q9Y2K1 713 aa30.6■■■□□ 2.49
C9orf3-216ENST00000478603 DDR1Q08345 913 aa30.59■■■□□ 2.49
C9orf3-216ENST00000478603 TTC5Q8N0Z6 440 aa30.59■■■□□ 2.49
C9orf3-216ENST00000478603 VSIG10Q8N0Z9 540 aa30.59■■■□□ 2.49
C9orf3-216ENST00000478603 NUDCQ9Y266 331 aa30.59■■■□□ 2.49
C9orf3-216ENST00000478603 USPL1Q5W0Q7 1092 aa30.58■■■□□ 2.49
C9orf3-216ENST00000478603 ZPR1O75312 459 aa30.57■■■□□ 2.48
C9orf3-216ENST00000478603 U2AF1L5P0DN76 240 aaPredicted RBP30.57■■■□□ 2.48
C9orf3-216ENST00000478603 DPEP1P16444 411 aa30.57■■■□□ 2.48
C9orf3-216ENST00000478603 U2AF1Q01081 240 aaKnown RBP eCLIP30.57■■■□□ 2.48
C9orf3-216ENST00000478603 ATP10DQ9P241 1426 aa30.56■■■□□ 2.48
C9orf3-216ENST00000478603 COL15A1P39059 1388 aa30.56■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms