RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 SPON1Q9HCB6 807 aa20.79■□□□□ 0.92
HMGA1-206ENST00000478214 MAP3K5Q99683 1374 aa20.79■□□□□ 0.92
HMGA1-206ENST00000478214 CASZ1Q86V15 1759 aa20.79■□□□□ 0.92
HMGA1-206ENST00000478214 PNPLA7Q6ZV29 1317 aa20.78■□□□□ 0.92
HMGA1-206ENST00000478214 GNAT3A8MTJ3 354 aa20.78■□□□□ 0.92
HMGA1-206ENST00000478214 ATP6V1AP38606 617 aa20.78■□□□□ 0.92
HMGA1-206ENST00000478214 ITPK1Q13572 414 aa20.78■□□□□ 0.92
HMGA1-206ENST00000478214 RBM42Q9BTD8 480 aaKnown RBP20.78■□□□□ 0.92
HMGA1-206ENST00000478214 LINC00116Q8NCU8 138 aa20.77■□□□□ 0.92
HMGA1-206ENST00000478214 IL17REQ8NFR9 667 aa20.77■□□□□ 0.92
HMGA1-206ENST00000478214 SLC4A9Q96Q91 983 aa20.77■□□□□ 0.92
HMGA1-206ENST00000478214 SCN11AQ9UI33 1791 aa20.77■□□□□ 0.91
HMGA1-206ENST00000478214 ATF5Q9Y2D1 282 aaPredicted RBP20.76■□□□□ 0.91
HMGA1-206ENST00000478214 MRC1P22897 1456 aa20.75■□□□□ 0.91
HMGA1-206ENST00000478214 PTCD1O75127 700 aaKnown RBP20.75■□□□□ 0.91
HMGA1-206ENST00000478214 HMGB2P26583 209 aaKnown RBP20.75■□□□□ 0.91
HMGA1-206ENST00000478214 C5P01031 1676 aa20.74■□□□□ 0.91
HMGA1-206ENST00000478214 MTFR1LQ9H019 292 aa20.74■□□□□ 0.91
HMGA1-206ENST00000478214 ADAMTS7Q9UKP4 1686 aa20.73■□□□□ 0.91
HMGA1-206ENST00000478214 SLC39A6Q13433 755 aa20.73■□□□□ 0.91
HMGA1-206ENST00000478214 AK7Q96M32 723 aa20.73■□□□□ 0.91
HMGA1-206ENST00000478214 PLEKHF1Q96S99 279 aa20.73■□□□□ 0.91
HMGA1-206ENST00000478214 PTGER2P43116 358 aa20.72■□□□□ 0.91
HMGA1-206ENST00000478214 AMIGO3Q86WK7 504 aa20.72■□□□□ 0.91
HMGA1-206ENST00000478214 COL23A1Q86Y22 540 aaPredicted RBP20.72■□□□□ 0.91
HMGA1-206ENST00000478214 TAF1LQ8IZX4 1826 aa20.71■□□□□ 0.91
HMGA1-206ENST00000478214 C4BP0C0L5 1744 aa20.71■□□□□ 0.91
HMGA1-206ENST00000478214 MSH5O43196 834 aa20.71■□□□□ 0.91
HMGA1-206ENST00000478214 TEFQ10587 303 aa20.71■□□□□ 0.91
HMGA1-206ENST00000478214 SMIM5Q71RC9 77 aa20.71■□□□□ 0.91
HMGA1-206ENST00000478214 TUBGCP6Q96RT7 1819 aa20.7■□□□□ 0.9
HMGA1-206ENST00000478214 NEFMP07197 916 aa20.7■□□□□ 0.9
HMGA1-206ENST00000478214 SLC16A10Q8TF71 515 aa20.7■□□□□ 0.9
HMGA1-206ENST00000478214 CEMIPQ8WUJ3 1361 aa20.7■□□□□ 0.9
HMGA1-206ENST00000478214 MCM10Q7L590 875 aa20.69■□□□□ 0.9
HMGA1-206ENST00000478214 RTF1Q92541 710 aaKnown RBP20.69■□□□□ 0.9
HMGA1-206ENST00000478214 PPP1R1BQ9UD71 204 aaPredicted RBP20.69■□□□□ 0.9
HMGA1-206ENST00000478214 QSER1Q2KHR3 1735 aa20.69■□□□□ 0.9
HMGA1-206ENST00000478214 GNPATO15228 680 aa20.68■□□□□ 0.9
HMGA1-206ENST00000478214 PHF14O94880 888 aa20.68■□□□□ 0.9
HMGA1-206ENST00000478214 DCTN1Q14203 1278 aa20.68■□□□□ 0.9
HMGA1-206ENST00000478214 FLAD1Q8NFF5 587 aa20.68■□□□□ 0.9
HMGA1-206ENST00000478214 SGIP1Q9BQI5 828 aa20.68■□□□□ 0.9
HMGA1-206ENST00000478214 PNNQ9H307 717 aaKnown RBP20.68■□□□□ 0.9
HMGA1-206ENST00000478214 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.67■□□□□ 0.9
HMGA1-206ENST00000478214 HTATSF1O43719 755 aaKnown RBP20.66■□□□□ 0.9
HMGA1-206ENST00000478214 SSFA2P28290 1259 aa20.66■□□□□ 0.9
HMGA1-206ENST00000478214 NFE2L2Q16236 605 aa20.66■□□□□ 0.9
HMGA1-206ENST00000478214 MAPK8IP3Q9UPT6 1336 aa20.66■□□□□ 0.9
HMGA1-206ENST00000478214 VIRMAQ69YN4 1812 aaKnown RBP20.65■□□□□ 0.9
HMGA1-206ENST00000478214 CNTNAP4Q9C0A0 1308 aa20.65■□□□□ 0.9
HMGA1-206ENST00000478214 WDR43Q15061 677 aaKnown RBP eCLIP20.65■□□□□ 0.9
HMGA1-206ENST00000478214 RC3H1Q5TC82 1133 aaKnown RBP20.65■□□□□ 0.9
HMGA1-206ENST00000478214 DNAJC10Q8IXB1 793 aa20.65■□□□□ 0.9
HMGA1-206ENST00000478214 ZNF831Q5JPB2 1677 aa20.64■□□□□ 0.9
HMGA1-206ENST00000478214 KCPQ6ZWJ8 1503 aa20.64■□□□□ 0.9
HMGA1-206ENST00000478214 ZNF790Q6PG37 636 aa20.64■□□□□ 0.89
HMGA1-206ENST00000478214 TTC5Q8N0Z6 440 aa20.64■□□□□ 0.89
HMGA1-206ENST00000478214 BTBD11A6QL63 1104 aa20.63■□□□□ 0.89
HMGA1-206ENST00000478214 CRKLP46109 303 aaKnown RBP20.63■□□□□ 0.89
HMGA1-206ENST00000478214 MSL1Q68DK7 614 aa20.63■□□□□ 0.89
HMGA1-206ENST00000478214 RTCBQ9Y3I0 505 aaKnown RBP20.63■□□□□ 0.89
HMGA1-206ENST00000478214 KCNQ3O43525 872 aa20.62■□□□□ 0.89
HMGA1-206ENST00000478214 CCDC146Q8IYE0 955 aa20.62■□□□□ 0.89
HMGA1-206ENST00000478214 ZNF496Q96IT1 587 aaPredicted RBP20.62■□□□□ 0.89
HMGA1-206ENST00000478214 ADAMTS8Q9UP79 889 aa20.62■□□□□ 0.89
HMGA1-206ENST00000478214 UBR3Q6ZT12 1888 aa20.62■□□□□ 0.89
HMGA1-206ENST00000478214 RPS6KA4O75676 772 aa20.61■□□□□ 0.89
HMGA1-206ENST00000478214 POLD1P28340 1107 aa20.61■□□□□ 0.89
HMGA1-206ENST00000478214 ARXQ96QS3 562 aa20.61■□□□□ 0.89
HMGA1-206ENST00000478214 COL5A3P25940 1745 aaPredicted RBP20.61■□□□□ 0.89
HMGA1-206ENST00000478214 SIPA1L3O60292 1781 aaPredicted RBP20.6■□□□□ 0.89
HMGA1-206ENST00000478214 CYP19A1P11511 503 aaPredicted RBP20.6■□□□□ 0.89
HMGA1-206ENST00000478214 CCDC184Q52MB2 194 aa20.6■□□□□ 0.89
HMGA1-206ENST00000478214 INTS5Q6P9B9 1019 aaKnown RBP20.6■□□□□ 0.89
HMGA1-206ENST00000478214 VSIG10Q8N0Z9 540 aa20.6■□□□□ 0.89
HMGA1-206ENST00000478214 TJP1Q07157 1748 aa20.6■□□□□ 0.89
HMGA1-206ENST00000478214 ANP32CO43423 234 aa20.59■□□□□ 0.89
HMGA1-206ENST00000478214 TRAPPC3LQ5T215 181 aa20.59■□□□□ 0.89
HMGA1-206ENST00000478214 THUMPD2Q9BTF0 503 aaKnown RBP20.59■□□□□ 0.89
HMGA1-206ENST00000478214 CICQ96RK0 1608 aaPredicted RBP20.58■□□□□ 0.89
HMGA1-206ENST00000478214 TMPOP42166 694 aaKnown RBP20.58■□□□□ 0.89
HMGA1-206ENST00000478214 RIPK4P57078 832 aa20.58■□□□□ 0.89
HMGA1-206ENST00000478214 TAF7Q15545 349 aaPredicted RBP20.58■□□□□ 0.89
HMGA1-206ENST00000478214 ARHGEF1Q92888 912 aaKnown RBP20.58■□□□□ 0.89
HMGA1-206ENST00000478214 RUNDC1Q96C34 613 aa20.58■□□□□ 0.89
HMGA1-206ENST00000478214 FMNL2Q96PY5 1086 aa20.58■□□□□ 0.89
HMGA1-206ENST00000478214 CCDC87Q9NVE4 849 aa20.58■□□□□ 0.89
HMGA1-206ENST00000478214 RRP7AQ9Y3A4 280 aaKnown RBP20.58■□□□□ 0.89
HMGA1-206ENST00000478214 HEG1Q9ULI3 1381 aa20.58■□□□□ 0.88
HMGA1-206ENST00000478214 ADRA2BP18089 450 aa20.57■□□□□ 0.88
HMGA1-206ENST00000478214 FHDC1Q9C0D6 1143 aaPredicted RBP20.57■□□□□ 0.88
HMGA1-206ENST00000478214 MIS18AQ9NYP9 233 aa20.57■□□□□ 0.88
HMGA1-206ENST00000478214 MYH14Q7Z406 1995 aaKnown RBP20.57■□□□□ 0.88
HMGA1-206ENST00000478214 UBR2Q8IWV8 1755 aa20.57■□□□□ 0.88
HMGA1-206ENST00000478214 ZBTB1Q9Y2K1 713 aa20.55■□□□□ 0.88
HMGA1-206ENST00000478214 COL24A1Q17RW2 1714 aa20.55■□□□□ 0.88
HMGA1-206ENST00000478214 DLG5Q8TDM6 1919 aa20.55■□□□□ 0.88
HMGA1-206ENST00000478214 STARD3NLO95772 234 aa20.54■□□□□ 0.88
HMGA1-206ENST00000478214 RFC4P35249 363 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms