RNA–Protein interactions for RNA: ENST00000477152.5

BRCA1-214, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,980 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-214ENST00000477152 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.29□□□□□ -0.76
BRCA1-214ENST00000477152 COL5A2P05997 1499 aaPredicted RBP10.29□□□□□ -0.76
BRCA1-214ENST00000477152 OVOS2A0A0G2JMS6 1433 aa10.29□□□□□ -0.76
BRCA1-214ENST00000477152 OVOS2A0A0J9YW53 1432 aa10.29□□□□□ -0.76
BRCA1-214ENST00000477152 OVOS2Q6IE36 1432 aa10.29□□□□□ -0.76
BRCA1-214ENST00000477152 POTEB2H3BUK9 544 aa10.28□□□□□ -0.76
BRCA1-214ENST00000477152 CSB-PGBD3P0DP91 1061 aa10.28□□□□□ -0.76
BRCA1-214ENST00000477152 TIMELESSQ9UNS1 1208 aa10.28□□□□□ -0.76
BRCA1-214ENST00000477152 SLIT3O75094 1523 aa10.28□□□□□ -0.76
BRCA1-214ENST00000477152 TRIM66O15016 1216 aa10.27□□□□□ -0.77
BRCA1-214ENST00000477152 PPP1R1BQ9UD71 204 aaPredicted RBP10.27□□□□□ -0.77
BRCA1-214ENST00000477152 RREB1Q92766 1687 aa10.27□□□□□ -0.77
BRCA1-214ENST00000477152 RGPD3A6NKT7 1758 aaPredicted RBP10.27□□□□□ -0.77
BRCA1-214ENST00000477152 AKAP12Q02952 1782 aa10.27□□□□□ -0.77
BRCA1-214ENST00000477152 RGPD4Q7Z3J3 1758 aa10.27□□□□□ -0.77
BRCA1-214ENST00000477152 NEUROD1Q13562 356 aa10.26□□□□□ -0.77
BRCA1-214ENST00000477152 WDR17Q8IZU2 1322 aa10.26□□□□□ -0.77
BRCA1-214ENST00000477152 SLC34A2O95436 690 aa10.26□□□□□ -0.77
BRCA1-214ENST00000477152 TTC21BQ7Z4L5 1316 aa10.26□□□□□ -0.77
BRCA1-214ENST00000477152 KTN1Q86UP2 1357 aaKnown RBP10.25□□□□□ -0.77
BRCA1-214ENST00000477152 PLSCR1O15162 318 aa10.25□□□□□ -0.77
BRCA1-214ENST00000477152 HDGFL2Q7Z4V5 671 aaPredicted RBP10.25□□□□□ -0.77
BRCA1-214ENST00000477152 SPON1Q9HCB6 807 aa10.25□□□□□ -0.77
BRCA1-214ENST00000477152 ANO8Q9HCE9 1232 aaPredicted RBP10.25□□□□□ -0.77
BRCA1-214ENST00000477152 ABCC6O95255 1503 aa10.25□□□□□ -0.77
BRCA1-214ENST00000477152 CCDC7Q96M83 1385 aa10.25□□□□□ -0.77
BRCA1-214ENST00000477152 CPSF1Q10570 1443 aaKnown RBP10.25□□□□□ -0.77
BRCA1-214ENST00000477152 EXOC5O00471 708 aa10.25□□□□□ -0.77
BRCA1-214ENST00000477152 CARD10Q9BWT7 1032 aa10.25□□□□□ -0.77
BRCA1-214ENST00000477152 CDHR5Q9HBB8 845 aa10.25□□□□□ -0.77
BRCA1-214ENST00000477152 NUP188Q5SRE5 1749 aa10.24□□□□□ -0.77
BRCA1-214ENST00000477152 PIK3C2AO00443 1686 aa10.24□□□□□ -0.77
BRCA1-214ENST00000477152 PCDHGA4Q9Y5G9 962 aa10.24□□□□□ -0.77
BRCA1-214ENST00000477152 WNK3Q9BYP7 1800 aa10.24□□□□□ -0.77
BRCA1-214ENST00000477152 SBNO2Q9Y2G9 1366 aa10.24□□□□□ -0.77
BRCA1-214ENST00000477152 SBF2Q86WG5 1849 aa10.23□□□□□ -0.77
BRCA1-214ENST00000477152 ARHGEF25Q86VW2 580 aa10.23□□□□□ -0.77
BRCA1-214ENST00000477152 TERF2IPQ9NYB0 399 aa10.23□□□□□ -0.77
BRCA1-214ENST00000477152 LRRC37A3O60309 1634 aa10.23□□□□□ -0.77
BRCA1-214ENST00000477152 KCNQ2O43526 872 aa10.23□□□□□ -0.77
BRCA1-214ENST00000477152 PDE4DQ08499 809 aa10.23□□□□□ -0.77
BRCA1-214ENST00000477152 KHSRPQ92945 711 aaKnown RBP eCLIP10.23□□□□□ -0.77
BRCA1-214ENST00000477152 CCDC102AQ96A19 550 aa10.23□□□□□ -0.77
BRCA1-214ENST00000477152 CARD11Q9BXL7 1154 aa10.23□□□□□ -0.77
BRCA1-214ENST00000477152 COL18A1P39060 1754 aa10.23□□□□□ -0.77
BRCA1-214ENST00000477152 BCL9O00512 1426 aa10.22□□□□□ -0.77
BRCA1-214ENST00000477152 PUS7Q96PZ0 661 aaKnown RBP10.22□□□□□ -0.77
BRCA1-214ENST00000477152 SIN3AQ96ST3 1273 aa10.22□□□□□ -0.77
BRCA1-214ENST00000477152 MON2Q7Z3U7 1717 aa10.22□□□□□ -0.77
BRCA1-214ENST00000477152 GNPATO15228 680 aa10.21□□□□□ -0.77
BRCA1-214ENST00000477152 PTGDRQ13258 359 aa10.21□□□□□ -0.77
BRCA1-214ENST00000477152 IL27Q8NEV9 243 aa10.21□□□□□ -0.77
BRCA1-214ENST00000477152 TMC1Q8TDI8 760 aa10.21□□□□□ -0.77
BRCA1-214ENST00000477152 KDM4CQ9H3R0 1056 aa10.21□□□□□ -0.77
BRCA1-214ENST00000477152 PCDHGA10Q9Y5H3 936 aa10.21□□□□□ -0.77
BRCA1-214ENST00000477152 TONSLQ96HA7 1378 aa10.21□□□□□ -0.77
BRCA1-214ENST00000477152 RGPD5Q99666 1765 aa10.21□□□□□ -0.77
BRCA1-214ENST00000477152 TSR1Q2NL82 804 aaKnown RBP10.21□□□□□ -0.78
BRCA1-214ENST00000477152 PEAK1Q9H792 1746 aa10.21□□□□□ -0.78
BRCA1-214ENST00000477152 STK32BQ9NY57 414 aa10.21□□□□□ -0.78
BRCA1-214ENST00000477152 NINLQ9Y2I6 1382 aa10.2□□□□□ -0.78
BRCA1-214ENST00000477152 IRF6O14896 467 aa10.2□□□□□ -0.78
BRCA1-214ENST00000477152 FCHSD2O94868 740 aa10.2□□□□□ -0.78
BRCA1-214ENST00000477152 USP31Q70CQ4 1352 aa10.19□□□□□ -0.78
BRCA1-214ENST00000477152 HMGB2P26583 209 aaKnown RBP10.19□□□□□ -0.78
BRCA1-214ENST00000477152 MAP2K5Q13163 448 aa10.19□□□□□ -0.78
BRCA1-214ENST00000477152 NPDC1Q9NQX5 325 aaPredicted RBP10.19□□□□□ -0.78
BRCA1-214ENST00000477152 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.19□□□□□ -0.78
BRCA1-214ENST00000477152 AXIN2Q9Y2T1 843 aa10.19□□□□□ -0.78
BRCA1-214ENST00000477152 USP54Q70EL1 1684 aa10.19□□□□□ -0.78
BRCA1-214ENST00000477152 MAP3K7O43318 606 aa10.18□□□□□ -0.78
BRCA1-214ENST00000477152 HIC1Q14526 733 aa10.18□□□□□ -0.78
BRCA1-214ENST00000477152 NLRP2Q9NX02 1062 aa10.18□□□□□ -0.78
BRCA1-214ENST00000477152 LTN1O94822 1766 aa10.18□□□□□ -0.78
BRCA1-214ENST00000477152 EDC4Q6P2E9 1401 aaKnown RBP10.18□□□□□ -0.78
BRCA1-214ENST00000477152 ZNF316A6NFI3 1004 aaPredicted RBP10.17□□□□□ -0.78
BRCA1-214ENST00000477152 IL2RBP14784 551 aa10.17□□□□□ -0.78
BRCA1-214ENST00000477152 MARCH10Q8NA82 808 aaPredicted RBP10.17□□□□□ -0.78
BRCA1-214ENST00000477152 NFAT5O94916 1531 aa10.17□□□□□ -0.78
BRCA1-214ENST00000477152 TNS2Q63HR2 1409 aa10.17□□□□□ -0.78
BRCA1-214ENST00000477152 FAM208AQ9UK61 1670 aaKnown RBP10.17□□□□□ -0.78
BRCA1-214ENST00000477152 PHF14O94880 888 aa10.16□□□□□ -0.78
BRCA1-214ENST00000477152 NUDT7P0C024 238 aa10.16□□□□□ -0.78
BRCA1-214ENST00000477152 HOXB3P14651 431 aaPredicted RBP10.16□□□□□ -0.78
BRCA1-214ENST00000477152 ARSIQ5FYB1 569 aa10.16□□□□□ -0.78
BRCA1-214ENST00000477152 KAT6BQ8WYB5 2073 aa10.16□□□□□ -0.78
BRCA1-214ENST00000477152 ERBB3P21860 1342 aa10.16□□□□□ -0.78
BRCA1-214ENST00000477152 YY1P25490 414 aa10.15□□□□□ -0.78
BRCA1-214ENST00000477152 TXNRD1Q16881 649 aa10.15□□□□□ -0.78
BRCA1-214ENST00000477152 SLAIN1Q8ND83 568 aa10.15□□□□□ -0.78
BRCA1-214ENST00000477152 ANKRD24Q8TF21 1146 aa10.15□□□□□ -0.78
BRCA1-214ENST00000477152 COG3Q96JB2 828 aa10.15□□□□□ -0.78
BRCA1-214ENST00000477152 FAM117AQ9C073 453 aa10.15□□□□□ -0.78
BRCA1-214ENST00000477152 NHSQ6T4R5 1651 aa10.15□□□□□ -0.78
BRCA1-214ENST00000477152 SLC15A2Q16348 729 aa10.14□□□□□ -0.79
BRCA1-214ENST00000477152 CDCA8Q53HL2 280 aa10.14□□□□□ -0.79
BRCA1-214ENST00000477152 FAM161AQ3B820 660 aa10.14□□□□□ -0.79
BRCA1-214ENST00000477152 NME9Q86XW9 330 aa10.14□□□□□ -0.79
BRCA1-214ENST00000477152 PARP9Q8IXQ6 854 aa10.13□□□□□ -0.79
BRCA1-214ENST00000477152 IP6K1Q92551 441 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms