RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 KDM3BQ7LBC6 1761 aa18.51■□□□□ 0.55
COL4A6-206ENST00000477085 DCAF5Q96JK2 942 aa18.51■□□□□ 0.55
COL4A6-206ENST00000477085 SLC52A2Q9HAB3 445 aa18.51■□□□□ 0.55
COL4A6-206ENST00000477085 DISP2A7MBM2 1401 aa18.51■□□□□ 0.55
COL4A6-206ENST00000477085 NFATC2IPQ8NCF5 419 aa18.5■□□□□ 0.55
COL4A6-206ENST00000477085 SCN11AQ9UI33 1791 aa18.5■□□□□ 0.55
COL4A6-206ENST00000477085 NRAPQ86VF7 1730 aa18.5■□□□□ 0.55
COL4A6-206ENST00000477085 SHANK3Q9BYB0 1731 aa18.5■□□□□ 0.55
COL4A6-206ENST00000477085 SLIT2O94813 1529 aa18.5■□□□□ 0.55
COL4A6-206ENST00000477085 HSPA1LP34931 641 aa18.5■□□□□ 0.55
COL4A6-206ENST00000477085 PCDH11XQ9BZA7 1347 aa18.49■□□□□ 0.55
COL4A6-206ENST00000477085 PCDH11YQ9BZA8 1340 aa18.49■□□□□ 0.55
COL4A6-206ENST00000477085 IPO8O15397 1037 aaKnown RBP18.49■□□□□ 0.55
COL4A6-206ENST00000477085 NKX1-1Q15270 411 aaPredicted RBP18.49■□□□□ 0.55
COL4A6-206ENST00000477085 ARHGAP45Q92619 1136 aa18.49■□□□□ 0.55
COL4A6-206ENST00000477085 MVPQ14764 893 aaKnown RBP18.48■□□□□ 0.55
COL4A6-206ENST00000477085 DDX54Q8TDD1 881 aaKnown RBP18.48■□□□□ 0.55
COL4A6-206ENST00000477085 HEG1Q9ULI3 1381 aa18.48■□□□□ 0.55
COL4A6-206ENST00000477085 SLC4A2P04920 1241 aa18.47■□□□□ 0.55
COL4A6-206ENST00000477085 HSP90AB1P08238 724 aaKnown RBP18.47■□□□□ 0.55
COL4A6-206ENST00000477085 TMEM57Q8N5G2 664 aa18.47■□□□□ 0.55
COL4A6-206ENST00000477085 MRC1P22897 1456 aa18.47■□□□□ 0.55
COL4A6-206ENST00000477085 SPATA31A1Q5TZJ5 1347 aa18.47■□□□□ 0.55
COL4A6-206ENST00000477085 SLC39A6Q13433 755 aa18.47■□□□□ 0.55
COL4A6-206ENST00000477085 G2E3Q7L622 706 aa18.47■□□□□ 0.55
COL4A6-206ENST00000477085 FTSJ3Q8IY81 847 aaKnown RBP18.47■□□□□ 0.55
COL4A6-206ENST00000477085 NECTIN2Q92692 538 aa18.47■□□□□ 0.55
COL4A6-206ENST00000477085 LRP6O75581 1613 aa18.46■□□□□ 0.55
COL4A6-206ENST00000477085 SOS1Q07889 1333 aaPredicted RBP18.46■□□□□ 0.54
COL4A6-206ENST00000477085 PRAMEF22A3QJZ6 481 aa18.45■□□□□ 0.54
COL4A6-206ENST00000477085 RGS12O14924 1447 aa18.45■□□□□ 0.54
COL4A6-206ENST00000477085 MS4A1P11836 297 aa18.45■□□□□ 0.54
COL4A6-206ENST00000477085 ZNF790Q6PG37 636 aa18.45■□□□□ 0.54
COL4A6-206ENST00000477085 C8orf37Q96NL8 207 aa18.45■□□□□ 0.54
COL4A6-206ENST00000477085 ABCC4O15439 1325 aa18.44■□□□□ 0.54
COL4A6-206ENST00000477085 SPATA31A5Q5VU36 1347 aa18.44■□□□□ 0.54
COL4A6-206ENST00000477085 SPATA31A7Q8IWB4 1347 aa18.44■□□□□ 0.54
COL4A6-206ENST00000477085 GIGYF1O75420 1035 aaPredicted RBP18.44■□□□□ 0.54
COL4A6-206ENST00000477085 CCDC30Q5VVM6 783 aa18.44■□□□□ 0.54
COL4A6-206ENST00000477085 BCL9LQ86UU0 1499 aa18.43■□□□□ 0.54
COL4A6-206ENST00000477085 SPATA31A6Q5VVP1 1343 aa18.43■□□□□ 0.54
COL4A6-206ENST00000477085 CABP4P57796 275 aa18.43■□□□□ 0.54
COL4A6-206ENST00000477085 HOXB7P09629 217 aa18.42■□□□□ 0.54
COL4A6-206ENST00000477085 ITPRIPQ8IWB1 547 aa18.42■□□□□ 0.54
COL4A6-206ENST00000477085 NWD2Q9ULI1 1742 aa18.42■□□□□ 0.54
COL4A6-206ENST00000477085 HDGFL1Q5TGJ6 251 aa18.42■□□□□ 0.54
COL4A6-206ENST00000477085 UNC5CLQ8IV45 518 aa18.42■□□□□ 0.54
COL4A6-206ENST00000477085 FNBP4Q8N3X1 1017 aaPredicted RBP18.42■□□□□ 0.54
COL4A6-206ENST00000477085 NGLY1Q96IV0 654 aa18.42■□□□□ 0.54
COL4A6-206ENST00000477085 PCDHB15Q9Y5E8 787 aa18.42■□□□□ 0.54
COL4A6-206ENST00000477085 KDM2BQ8NHM5 1336 aa18.41■□□□□ 0.54
COL4A6-206ENST00000477085 ERVV-2B6SEH9 535 aa18.41■□□□□ 0.54
COL4A6-206ENST00000477085 EIF2S2P20042 333 aaKnown RBP18.41■□□□□ 0.54
COL4A6-206ENST00000477085 API5Q9BZZ5 524 aaKnown RBP18.41■□□□□ 0.54
COL4A6-206ENST00000477085 THRAP3Q9Y2W1 955 aaKnown RBP18.41■□□□□ 0.54
COL4A6-206ENST00000477085 ZNF496Q96IT1 587 aaPredicted RBP18.4■□□□□ 0.54
COL4A6-206ENST00000477085 IGHDP01880 384 aa18.4■□□□□ 0.54
COL4A6-206ENST00000477085 STK31Q9BXU1 1019 aa18.4■□□□□ 0.54
COL4A6-206ENST00000477085 PTPRCP08575 1304 aa18.39■□□□□ 0.53
COL4A6-206ENST00000477085 EXOC5O00471 708 aa18.39■□□□□ 0.53
COL4A6-206ENST00000477085 ZBTB40Q9NUA8 1239 aa18.39■□□□□ 0.53
COL4A6-206ENST00000477085 DDX19BQ9UMR2 479 aa18.39■□□□□ 0.53
COL4A6-206ENST00000477085 WNK3Q9BYP7 1800 aa18.39■□□□□ 0.53
COL4A6-206ENST00000477085 TOGARAM1Q9Y4F4 1720 aa18.39■□□□□ 0.53
COL4A6-206ENST00000477085 ZBTB7BO15156 539 aaPredicted RBP18.38■□□□□ 0.53
COL4A6-206ENST00000477085 PHAXQ9H814 394 aaKnown RBP18.38■□□□□ 0.53
COL4A6-206ENST00000477085 CHPF2Q9P2E5 772 aa18.38■□□□□ 0.53
COL4A6-206ENST00000477085 FLIIQ13045 1269 aa18.37■□□□□ 0.53
COL4A6-206ENST00000477085 BARGINQ6ZT62 677 aa18.37■□□□□ 0.53
COL4A6-206ENST00000477085 F6X3S4 739 aa18.37■□□□□ 0.53
COL4A6-206ENST00000477085 AAMPQ13685 434 aa18.37■□□□□ 0.53
COL4A6-206ENST00000477085 VPS72Q15906 364 aa18.37■□□□□ 0.53
COL4A6-206ENST00000477085 INTS3Q68E01 1043 aaKnown RBP18.37■□□□□ 0.53
COL4A6-206ENST00000477085 CCDC9Q9Y3X0 531 aaKnown RBP18.37■□□□□ 0.53
COL4A6-206ENST00000477085 TNS2Q63HR2 1409 aa18.36■□□□□ 0.53
COL4A6-206ENST00000477085 ANXA1P04083 346 aa18.36■□□□□ 0.53
COL4A6-206ENST00000477085 PROSER3Q2NL68 480 aa18.36■□□□□ 0.53
COL4A6-206ENST00000477085 CDCA7Q9BWT1 371 aaPredicted RBP18.36■□□□□ 0.53
COL4A6-206ENST00000477085 GLI3P10071 1580 aa18.36■□□□□ 0.53
COL4A6-206ENST00000477085 PDIA6Q15084 440 aa18.35■□□□□ 0.53
COL4A6-206ENST00000477085 TTC5Q8N0Z6 440 aa18.35■□□□□ 0.53
COL4A6-206ENST00000477085 PIGBQ92521 554 aa18.35■□□□□ 0.53
COL4A6-206ENST00000477085 USP16Q9Y5T5 823 aa18.35■□□□□ 0.53
COL4A6-206ENST00000477085 C5P01031 1676 aa18.34■□□□□ 0.53
COL4A6-206ENST00000477085 DDB1Q16531 1140 aa18.34■□□□□ 0.53
COL4A6-206ENST00000477085 USP21Q9UK80 565 aa18.34■□□□□ 0.53
COL4A6-206ENST00000477085 SKAP1Q86WV1 359 aa18.33■□□□□ 0.53
COL4A6-206ENST00000477085 MARCH10Q8NA82 808 aaPredicted RBP18.33■□□□□ 0.53
COL4A6-206ENST00000477085 FMNL2Q96PY5 1086 aa18.33■□□□□ 0.53
COL4A6-206ENST00000477085 FKBP5Q13451 457 aaPredicted RBP18.32■□□□□ 0.52
COL4A6-206ENST00000477085 FAM98CQ17RN3 349 aaKnown RBP18.32■□□□□ 0.52
COL4A6-206ENST00000477085 CENPQQ7L2Z9 268 aaPredicted RBP18.32■□□□□ 0.52
COL4A6-206ENST00000477085 DBF4Q9UBU7 674 aaPredicted RBP18.32■□□□□ 0.52
COL4A6-206ENST00000477085 KCPQ6ZWJ8 1503 aa18.32■□□□□ 0.52
COL4A6-206ENST00000477085 PAPPAQ13219 1627 aa18.32■□□□□ 0.52
COL4A6-206ENST00000477085 SNRPA1P09661 255 aaKnown RBP18.32■□□□□ 0.52
COL4A6-206ENST00000477085 TMOD3Q9NYL9 352 aa18.32■□□□□ 0.52
COL4A6-206ENST00000477085 ASAP1Q9ULH1 1129 aa18.31■□□□□ 0.52
COL4A6-206ENST00000477085 SLC4A10Q6U841 1118 aa18.3■□□□□ 0.52
COL4A6-206ENST00000477085 ATG3Q9NT62 314 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms