RNA–Protein interactions for RNA: ENST00000475540.1

SMC5-203, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-203ENST00000475540 TLR1Q15399 786 aa12.89□□□□□ -0.35
SMC5-203ENST00000475540 KANK4Q5T7N3 995 aaPredicted RBP12.89□□□□□ -0.35
SMC5-203ENST00000475540 CCDC102BQ68D86 513 aa12.89□□□□□ -0.35
SMC5-203ENST00000475540 TMEM214Q6NUQ4 689 aaKnown RBP12.89□□□□□ -0.35
SMC5-203ENST00000475540 POU4F2Q12837 409 aa12.88□□□□□ -0.35
SMC5-203ENST00000475540 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.88□□□□□ -0.35
SMC5-203ENST00000475540 TPCN2Q8NHX9 752 aa12.88□□□□□ -0.35
SMC5-203ENST00000475540 TERTO14746 1132 aaKnown RBP12.87□□□□□ -0.35
SMC5-203ENST00000475540 RHOQP17081 205 aa12.87□□□□□ -0.35
SMC5-203ENST00000475540 SMTNP53814 917 aa12.87□□□□□ -0.35
SMC5-203ENST00000475540 NPAS3Q8IXF0 933 aa12.87□□□□□ -0.35
SMC5-203ENST00000475540 SLC4A9Q96Q91 983 aa12.87□□□□□ -0.35
SMC5-203ENST00000475540 FHDC1Q9C0D6 1143 aaPredicted RBP12.87□□□□□ -0.35
SMC5-203ENST00000475540 SPATA31C2B4DYI2 1134 aa12.86□□□□□ -0.35
SMC5-203ENST00000475540 SLC16A10Q8TF71 515 aa12.86□□□□□ -0.35
SMC5-203ENST00000475540 ZNF594Q96JF6 807 aaPredicted RBP12.86□□□□□ -0.35
SMC5-203ENST00000475540 KIAA1024Q9UPX6 916 aa12.86□□□□□ -0.35
SMC5-203ENST00000475540 GNASQ5JWF2 1037 aa12.85□□□□□ -0.35
SMC5-203ENST00000475540 TAS1R3Q7RTX0 852 aa12.85□□□□□ -0.35
SMC5-203ENST00000475540 ZNF358Q9NW07 568 aa12.85□□□□□ -0.35
SMC5-203ENST00000475540 SLC35F4A4IF30 521 aa12.84□□□□□ -0.35
SMC5-203ENST00000475540 WDR44Q5JSH3 913 aa12.84□□□□□ -0.35
SMC5-203ENST00000475540 NBPF10Q6P3W6 841 aaKnown RBP12.84□□□□□ -0.35
SMC5-203ENST00000475540 PPARGC1BQ86YN6 1023 aaKnown RBP12.84□□□□□ -0.35
SMC5-203ENST00000475540 NBPF15Q8N660 670 aa12.84□□□□□ -0.35
SMC5-203ENST00000475540 A6NJY4 79 aa12.83□□□□□ -0.36
SMC5-203ENST00000475540 PPFIA3O75145 1194 aa12.83□□□□□ -0.36
SMC5-203ENST00000475540 CDCA8Q53HL2 280 aa12.83□□□□□ -0.36
SMC5-203ENST00000475540 SIX5Q8N196 739 aa12.83□□□□□ -0.36
SMC5-203ENST00000475540 CCDC155Q8N6L0 562 aa12.83□□□□□ -0.36
SMC5-203ENST00000475540 FAM196BA6NMK8 535 aa12.82□□□□□ -0.36
SMC5-203ENST00000475540 CCDC82Q8N4S0 544 aa12.82□□□□□ -0.36
SMC5-203ENST00000475540 CDK2AP1O14519 115 aa12.81□□□□□ -0.36
SMC5-203ENST00000475540 VEGFBP49765 207 aa12.81□□□□□ -0.36
SMC5-203ENST00000475540 PTK7Q13308 1070 aa12.81□□□□□ -0.36
SMC5-203ENST00000475540 MTFR1Q15390 333 aa12.81□□□□□ -0.36
SMC5-203ENST00000475540 CRTC2Q53ET0 693 aaPredicted RBP12.81□□□□□ -0.36
SMC5-203ENST00000475540 RHBDD1Q8TEB9 315 aa12.81□□□□□ -0.36
SMC5-203ENST00000475540 TIMMDC1Q9NPL8 285 aa12.81□□□□□ -0.36
SMC5-203ENST00000475540 USP17L15C9J2P7 530 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 USP17L10C9JJH3 530 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 USP17L13C9JLJ4 530 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 USP17L12C9JPN9 530 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 USP17L11C9JVI0 530 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 USP17L21D6R901 530 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 USP17L18D6R9N7 530 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 USP17L22D6RA61 530 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 USP17L17D6RBQ6 530 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 USP17L19D6RCP7 530 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 USP17L20D6RJB6 530 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 SUPT5HO00267 1087 aaKnown RBP12.8□□□□□ -0.36
SMC5-203ENST00000475540 PHKA2P46019 1235 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 USP17L24Q0WX57 530 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 C1orf115Q9H7X2 142 aa12.8□□□□□ -0.36
SMC5-203ENST00000475540 SENP3-EIF4A1A0A087X0R7 540 aa12.79□□□□□ -0.36
SMC5-203ENST00000475540 SFI1A8K8P3 1242 aa12.79□□□□□ -0.36
SMC5-203ENST00000475540 H3BM21 787 aa12.79□□□□□ -0.36
SMC5-203ENST00000475540 WFS1O76024 890 aa12.79□□□□□ -0.36
SMC5-203ENST00000475540 SEC13P55735 322 aa12.79□□□□□ -0.36
SMC5-203ENST00000475540 TREML4Q6UXN2 200 aa12.79□□□□□ -0.36
SMC5-203ENST00000475540 NIFKQ9BYG3 293 aaKnown RBP12.79□□□□□ -0.36
SMC5-203ENST00000475540 DYRK1BQ9Y463 629 aa12.79□□□□□ -0.36
SMC5-203ENST00000475540 M0R2N6 131 aa12.78□□□□□ -0.36
SMC5-203ENST00000475540 DKK1O94907 266 aa12.78□□□□□ -0.36
SMC5-203ENST00000475540 NFX1Q12986 1120 aaKnown RBP12.78□□□□□ -0.36
SMC5-203ENST00000475540 C4orf17Q53FE4 359 aa12.78□□□□□ -0.36
SMC5-203ENST00000475540 ANKMY2Q8IV38 441 aa12.78□□□□□ -0.36
SMC5-203ENST00000475540 TNS4Q8IZW8 715 aa12.78□□□□□ -0.36
SMC5-203ENST00000475540 DPYDQ12882 1025 aa12.77□□□□□ -0.37
SMC5-203ENST00000475540 GAS2L1Q99501 681 aaPredicted RBP12.77□□□□□ -0.37
SMC5-203ENST00000475540 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.76□□□□□ -0.37
SMC5-203ENST00000475540 ITGA6P23229 1130 aa12.76□□□□□ -0.37
SMC5-203ENST00000475540 SCHIP1Q9P0W5 487 aaPredicted RBP12.76□□□□□ -0.37
SMC5-203ENST00000475540 FAM200AQ8TCP9 573 aa12.75□□□□□ -0.37
SMC5-203ENST00000475540 IRF7Q92985 503 aa12.75□□□□□ -0.37
SMC5-203ENST00000475540 CABP1Q9NZU7 370 aa12.75□□□□□ -0.37
SMC5-203ENST00000475540 SRPK2P78362 688 aaKnown RBP12.74□□□□□ -0.37
SMC5-203ENST00000475540 RIPOR1Q6ZS17 1223 aa12.74□□□□□ -0.37
SMC5-203ENST00000475540 TSEN2Q8NCE0 465 aaKnown RBP12.74□□□□□ -0.37
SMC5-203ENST00000475540 PBXIP1Q96AQ6 731 aa12.74□□□□□ -0.37
SMC5-203ENST00000475540 HINFPQ9BQA5 517 aa12.74□□□□□ -0.37
SMC5-203ENST00000475540 IQSEC3Q9UPP2 1182 aaPredicted RBP12.74□□□□□ -0.37
SMC5-203ENST00000475540 A0A1B0GTH6 734 aa12.73□□□□□ -0.37
SMC5-203ENST00000475540 F11P03951 625 aa12.73□□□□□ -0.37
SMC5-203ENST00000475540 EPHA4P54764 986 aa12.73□□□□□ -0.37
SMC5-203ENST00000475540 PLA2G4AP47712 749 aa12.72□□□□□ -0.37
SMC5-203ENST00000475540 SLC9A9Q8IVB4 645 aa12.72□□□□□ -0.37
SMC5-203ENST00000475540 AIDAQ96BJ3 306 aa12.72□□□□□ -0.37
SMC5-203ENST00000475540 FOXK2Q01167 660 aa12.71□□□□□ -0.37
SMC5-203ENST00000475540 NANOS1Q8WY41 292 aaKnown RBP12.71□□□□□ -0.37
SMC5-203ENST00000475540 NOVA2Q9UNW9 492 aaKnown RBP12.71□□□□□ -0.37
SMC5-203ENST00000475540 USP3Q9Y6I4 520 aa12.71□□□□□ -0.37
SMC5-203ENST00000475540 CDC14CA4D256 554 aa12.7□□□□□ -0.38
SMC5-203ENST00000475540 H7C1W4 665 aa12.7□□□□□ -0.38
SMC5-203ENST00000475540 SV2AQ7L0J3 742 aa12.7□□□□□ -0.38
SMC5-203ENST00000475540 GMCL1Q96IK5 515 aa12.7□□□□□ -0.38
SMC5-203ENST00000475540 ARXQ96QS3 562 aa12.7□□□□□ -0.38
SMC5-203ENST00000475540 ATG7O95352 703 aa12.69□□□□□ -0.38
SMC5-203ENST00000475540 ELOAQ14241 798 aaKnown RBP12.69□□□□□ -0.38
SMC5-203ENST00000475540 TBCELQ5QJ74 424 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms