RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 LGR6Q9HBX8 967 aa13.21□□□□□ -0.29
PRPF38A-202ENST00000474048 ADAMTS7Q9UKP4 1686 aa13.21□□□□□ -0.3
PRPF38A-202ENST00000474048 ERVV-2B6SEH9 535 aa13.2□□□□□ -0.3
PRPF38A-202ENST00000474048 ZNF853P0CG23 659 aa13.2□□□□□ -0.3
PRPF38A-202ENST00000474048 TWISTNBQ3B726 338 aaPredicted RBP13.2□□□□□ -0.3
PRPF38A-202ENST00000474048 GJD4Q96KN9 370 aaPredicted RBP13.2□□□□□ -0.3
PRPF38A-202ENST00000474048 QTRT2Q9H974 415 aaKnown RBP13.2□□□□□ -0.3
PRPF38A-202ENST00000474048 SLC52A2Q9HAB3 445 aa13.2□□□□□ -0.3
PRPF38A-202ENST00000474048 TMOD3Q9NYL9 352 aa13.2□□□□□ -0.3
PRPF38A-202ENST00000474048 ATRNO75882 1429 aa13.2□□□□□ -0.3
PRPF38A-202ENST00000474048 SMC4Q9NTJ3 1288 aa13.19□□□□□ -0.3
PRPF38A-202ENST00000474048 KDM6AO15550 1401 aaPredicted RBP13.19□□□□□ -0.3
PRPF38A-202ENST00000474048 SIPA1L3O60292 1781 aaPredicted RBP13.19□□□□□ -0.3
PRPF38A-202ENST00000474048 KDM3BQ7LBC6 1761 aa13.19□□□□□ -0.3
PRPF38A-202ENST00000474048 SOS1Q07889 1333 aaPredicted RBP13.18□□□□□ -0.3
PRPF38A-202ENST00000474048 MRC1P22897 1456 aa13.18□□□□□ -0.3
PRPF38A-202ENST00000474048 KAT6BQ8WYB5 2073 aa13.18□□□□□ -0.3
PRPF38A-202ENST00000474048 SYTL4Q96C24 671 aaPredicted RBP13.18□□□□□ -0.3
PRPF38A-202ENST00000474048 STK31Q9BXU1 1019 aa13.18□□□□□ -0.3
PRPF38A-202ENST00000474048 MIS18AQ9NYP9 233 aa13.18□□□□□ -0.3
PRPF38A-202ENST00000474048 KIF16BQ96L93 1317 aa13.17□□□□□ -0.3
PRPF38A-202ENST00000474048 DOT1LQ8TEK3 1739 aa13.17□□□□□ -0.3
PRPF38A-202ENST00000474048 ELL2O00472 640 aaPredicted RBP13.17□□□□□ -0.3
PRPF38A-202ENST00000474048 RRP1P56182 461 aaKnown RBP13.17□□□□□ -0.3
PRPF38A-202ENST00000474048 NKX1-1Q15270 411 aaPredicted RBP13.17□□□□□ -0.3
PRPF38A-202ENST00000474048 NFATC2IPQ8NCF5 419 aa13.17□□□□□ -0.3
PRPF38A-202ENST00000474048 GLI3P10071 1580 aa13.16□□□□□ -0.3
PRPF38A-202ENST00000474048 MS4A1P11836 297 aa13.16□□□□□ -0.3
PRPF38A-202ENST00000474048 ALDH1L2Q3SY69 923 aa13.16□□□□□ -0.3
PRPF38A-202ENST00000474048 FRAT1Q92837 279 aaPredicted RBP13.16□□□□□ -0.3
PRPF38A-202ENST00000474048 THSD7AQ9UPZ6 1657 aa13.15□□□□□ -0.3
PRPF38A-202ENST00000474048 IPO8O15397 1037 aaKnown RBP13.15□□□□□ -0.3
PRPF38A-202ENST00000474048 RARSP54136 660 aaKnown RBP13.15□□□□□ -0.3
PRPF38A-202ENST00000474048 CCDC30Q5VVM6 783 aa13.15□□□□□ -0.3
PRPF38A-202ENST00000474048 HOXB7P09629 217 aa13.14□□□□□ -0.31
PRPF38A-202ENST00000474048 RBM6P78332 1123 aaKnown RBP13.14□□□□□ -0.31
PRPF38A-202ENST00000474048 ZNF790Q6PG37 636 aa13.14□□□□□ -0.31
PRPF38A-202ENST00000474048 FTSJ3Q8IY81 847 aaKnown RBP13.14□□□□□ -0.31
PRPF38A-202ENST00000474048 FMNL2Q96PY5 1086 aa13.14□□□□□ -0.31
PRPF38A-202ENST00000474048 BCL2L13Q9BXK5 485 aa13.14□□□□□ -0.31
PRPF38A-202ENST00000474048 TOGARAM1Q9Y4F4 1720 aa13.13□□□□□ -0.31
PRPF38A-202ENST00000474048 ITGB4P16144 1822 aa13.13□□□□□ -0.31
PRPF38A-202ENST00000474048 FKBP8Q14318 412 aa13.13□□□□□ -0.31
PRPF38A-202ENST00000474048 HDGFL1Q5TGJ6 251 aa13.13□□□□□ -0.31
PRPF38A-202ENST00000474048 SEPT12Q8IYM1 358 aa13.13□□□□□ -0.31
PRPF38A-202ENST00000474048 C8orf58Q8NAV2 365 aa13.13□□□□□ -0.31
PRPF38A-202ENST00000474048 GTF3C3Q9Y5Q9 886 aa13.13□□□□□ -0.31
PRPF38A-202ENST00000474048 VAMP4O75379 141 aa13.12□□□□□ -0.31
PRPF38A-202ENST00000474048 EIF4A1P60842 406 aaKnown RBP13.12□□□□□ -0.31
PRPF38A-202ENST00000474048 ZKSCAN2Q63HK3 967 aa13.12□□□□□ -0.31
PRPF38A-202ENST00000474048 BCAR3O75815 825 aa13.11□□□□□ -0.31
PRPF38A-202ENST00000474048 EIF2S2P20042 333 aaKnown RBP13.11□□□□□ -0.31
PRPF38A-202ENST00000474048 RXRBP28702 533 aa13.11□□□□□ -0.31
PRPF38A-202ENST00000474048 SLC39A6Q13433 755 aa13.11□□□□□ -0.31
PRPF38A-202ENST00000474048 TSPYL6Q8N831 410 aa13.11□□□□□ -0.31
PRPF38A-202ENST00000474048 MARCH10Q8NA82 808 aaPredicted RBP13.11□□□□□ -0.31
PRPF38A-202ENST00000474048 ACSBG1Q96GR2 724 aa13.11□□□□□ -0.31
PRPF38A-202ENST00000474048 PAPPAQ13219 1627 aa13.1□□□□□ -0.31
PRPF38A-202ENST00000474048 LAMB4A4D0S4 1761 aa13.1□□□□□ -0.31
PRPF38A-202ENST00000474048 SNRPA1P09661 255 aaKnown RBP13.1□□□□□ -0.31
PRPF38A-202ENST00000474048 PRIM1P49642 420 aaKnown RBP13.1□□□□□ -0.31
PRPF38A-202ENST00000474048 IRX6P78412 446 aaPredicted RBP13.1□□□□□ -0.31
PRPF38A-202ENST00000474048 KRT24Q2M2I5 525 aa13.1□□□□□ -0.31
PRPF38A-202ENST00000474048 SSH1Q8WYL5 1049 aa13.1□□□□□ -0.31
PRPF38A-202ENST00000474048 CACNA1FO60840 1977 aa13.1□□□□□ -0.31
PRPF38A-202ENST00000474048 PPP4R3CPQ6ZMV5 832 aa13.09□□□□□ -0.31
PRPF38A-202ENST00000474048 NPM2Q86SE8 214 aaKnown RBP13.09□□□□□ -0.31
PRPF38A-202ENST00000474048 NECTIN2Q92692 538 aa13.09□□□□□ -0.31
PRPF38A-202ENST00000474048 SMARCC1Q92922 1105 aaPredicted RBP13.09□□□□□ -0.31
PRPF38A-202ENST00000474048 RBM42Q9BTD8 480 aaKnown RBP13.09□□□□□ -0.31
PRPF38A-202ENST00000474048 BCL9O00512 1426 aa13.08□□□□□ -0.32
PRPF38A-202ENST00000474048 UBR2Q8IWV8 1755 aa13.08□□□□□ -0.32
PRPF38A-202ENST00000474048 TCERG1O14776 1098 aaKnown RBP13.08□□□□□ -0.32
PRPF38A-202ENST00000474048 PLIN1O60240 522 aa13.08□□□□□ -0.32
PRPF38A-202ENST00000474048 PTCD1O75127 700 aaKnown RBP13.08□□□□□ -0.32
PRPF38A-202ENST00000474048 ERICH6BQ5W0A0 696 aa13.08□□□□□ -0.32
PRPF38A-202ENST00000474048 KRT27Q7Z3Y8 459 aa13.08□□□□□ -0.32
PRPF38A-202ENST00000474048 PIGBQ92521 554 aa13.08□□□□□ -0.32
PRPF38A-202ENST00000474048 TEX13AQ9BXU3 409 aaPredicted RBP13.08□□□□□ -0.32
PRPF38A-202ENST00000474048 API5Q9BZZ5 524 aaKnown RBP13.08□□□□□ -0.32
PRPF38A-202ENST00000474048 RNF123Q5XPI4 1314 aa13.08□□□□□ -0.32
PRPF38A-202ENST00000474048 HEG1Q9ULI3 1381 aa13.07□□□□□ -0.32
PRPF38A-202ENST00000474048 KCNQ3O43525 872 aa13.07□□□□□ -0.32
PRPF38A-202ENST00000474048 ONECUT3O60422 494 aaPredicted RBP13.07□□□□□ -0.32
PRPF38A-202ENST00000474048 GIGYF1O75420 1035 aaPredicted RBP13.07□□□□□ -0.32
PRPF38A-202ENST00000474048 SLC4A2P04920 1241 aa13.07□□□□□ -0.32
PRPF38A-202ENST00000474048 ZNF496Q96IT1 587 aaPredicted RBP13.07□□□□□ -0.32
PRPF38A-202ENST00000474048 CHMP4BQ9H444 224 aaKnown RBP13.07□□□□□ -0.32
PRPF38A-202ENST00000474048 DBF4Q9UBU7 674 aaPredicted RBP13.07□□□□□ -0.32
PRPF38A-202ENST00000474048 NOB1Q9ULX3 412 aaKnown RBP13.07□□□□□ -0.32
PRPF38A-202ENST00000474048 NHSQ6T4R5 1651 aa13.07□□□□□ -0.32
PRPF38A-202ENST00000474048 PTPRCP08575 1304 aa13.07□□□□□ -0.32
PRPF38A-202ENST00000474048 C5P01031 1676 aa13.06□□□□□ -0.32
PRPF38A-202ENST00000474048 PDE3AQ14432 1141 aa13.06□□□□□ -0.32
PRPF38A-202ENST00000474048 ATF7IPQ6VMQ6 1270 aa13.06□□□□□ -0.32
PRPF38A-202ENST00000474048 FAM196AQ6ZSG2 479 aa13.06□□□□□ -0.32
PRPF38A-202ENST00000474048 DZIP1LQ8IYY4 767 aaKnown RBP13.06□□□□□ -0.32
PRPF38A-202ENST00000474048 MRPL50Q8N5N7 158 aaKnown RBP13.06□□□□□ -0.32
PRPF38A-202ENST00000474048 BRWD3Q6RI45 1802 aa13.05□□□□□ -0.32
PRPF38A-202ENST00000474048 STARD3NLO95772 234 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms