RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 ZNF777Q9ULD5 760 aaPredicted RBP8.18□□□□□ -1.1
ATPAF1-204ENST00000474020 TSPY4P0CV99 314 aa8.17□□□□□ -1.1
ATPAF1-204ENST00000474020 TSPY10P0CW01 314 aa8.17□□□□□ -1.1
ATPAF1-204ENST00000474020 BANK1Q8NDB2 785 aa8.17□□□□□ -1.1
ATPAF1-204ENST00000474020 EMILIN1Q9Y6C2 1016 aa8.17□□□□□ -1.1
ATPAF1-204ENST00000474020 SHANK2Q9UPX8 1470 aa8.17□□□□□ -1.1
ATPAF1-204ENST00000474020 GPATCH8Q9UKJ3 1502 aaKnown RBP8.17□□□□□ -1.1
ATPAF1-204ENST00000474020 CCER2I3L3R5 266 aa8.16□□□□□ -1.1
ATPAF1-204ENST00000474020 ADGRL2O95490 1459 aa8.16□□□□□ -1.1
ATPAF1-204ENST00000474020 DDX10Q13206 875 aaKnown RBP8.16□□□□□ -1.1
ATPAF1-204ENST00000474020 GJD4Q96KN9 370 aaPredicted RBP8.16□□□□□ -1.1
ATPAF1-204ENST00000474020 KCTD15Q96SI1 283 aaPredicted RBP8.16□□□□□ -1.1
ATPAF1-204ENST00000474020 SOCS7O14512 581 aa8.15□□□□□ -1.1
ATPAF1-204ENST00000474020 WFS1O76024 890 aa8.15□□□□□ -1.1
ATPAF1-204ENST00000474020 EIF4G2P78344 907 aaKnown RBP eCLIP8.15□□□□□ -1.1
ATPAF1-204ENST00000474020 LCE2AQ5TA79 106 aaPredicted RBP8.15□□□□□ -1.1
ATPAF1-204ENST00000474020 MEIOBQ8N635 442 aa8.15□□□□□ -1.1
ATPAF1-204ENST00000474020 PURBQ96QR8 312 aaKnown RBP8.15□□□□□ -1.1
ATPAF1-204ENST00000474020 NFX1Q12986 1120 aaKnown RBP8.14□□□□□ -1.11
ATPAF1-204ENST00000474020 STK17AQ9UEE5 414 aa8.14□□□□□ -1.11
ATPAF1-204ENST00000474020 CROCC2H7BZ55 1655 aa8.14□□□□□ -1.11
ATPAF1-204ENST00000474020 ATP10BO94823 1461 aa8.13□□□□□ -1.11
ATPAF1-204ENST00000474020 NCOA1Q15788 1441 aa8.13□□□□□ -1.11
ATPAF1-204ENST00000474020 ZNF644Q9H582 1327 aaPredicted RBP8.13□□□□□ -1.11
ATPAF1-204ENST00000474020 UPP2O95045 317 aa8.13□□□□□ -1.11
ATPAF1-204ENST00000474020 PRKCSHP14314 528 aaPredicted RBP8.13□□□□□ -1.11
ATPAF1-204ENST00000474020 DHX9Q08211 1270 aaKnown RBP8.13□□□□□ -1.11
ATPAF1-204ENST00000474020 NBPF20Q3BBV1 942 aa8.13□□□□□ -1.11
ATPAF1-204ENST00000474020 INTS6LQ5JSJ4 861 aaKnown RBP8.13□□□□□ -1.11
ATPAF1-204ENST00000474020 PPP1R26Q5T8A7 1209 aaPredicted RBP8.13□□□□□ -1.11
ATPAF1-204ENST00000474020 PGPEP1Q9NXJ5 209 aa8.13□□□□□ -1.11
ATPAF1-204ENST00000474020 RPRD2Q5VT52 1461 aaKnown RBP8.13□□□□□ -1.11
ATPAF1-204ENST00000474020 PLEKHH2Q8IVE3 1493 aa8.13□□□□□ -1.11
ATPAF1-204ENST00000474020 C9orf84Q5VXU9 1444 aa8.12□□□□□ -1.11
ATPAF1-204ENST00000474020 ANKRD50Q9ULJ7 1429 aa8.12□□□□□ -1.11
ATPAF1-204ENST00000474020 TERTO14746 1132 aaKnown RBP8.12□□□□□ -1.11
ATPAF1-204ENST00000474020 DZIP3Q86Y13 1208 aaKnown RBP8.12□□□□□ -1.11
ATPAF1-204ENST00000474020 LINC00528Q8N1L1 170 aa8.12□□□□□ -1.11
ATPAF1-204ENST00000474020 ABCC10Q5T3U5 1492 aa8.12□□□□□ -1.11
ATPAF1-204ENST00000474020 KIAA1107Q9UPP5 1409 aa8.12□□□□□ -1.11
ATPAF1-204ENST00000474020 ANKRD30BQ9BXX2 1392 aa8.11□□□□□ -1.11
ATPAF1-204ENST00000474020 ARHGEF5Q12774 1597 aa8.11□□□□□ -1.11
ATPAF1-204ENST00000474020 ZBBXA8MT70 800 aa8.11□□□□□ -1.11
ATPAF1-204ENST00000474020 NPAS3Q8IXF0 933 aa8.11□□□□□ -1.11
ATPAF1-204ENST00000474020 MTMR14Q8NCE2 650 aa8.11□□□□□ -1.11
ATPAF1-204ENST00000474020 CHD1O14646 1710 aa8.1□□□□□ -1.11
ATPAF1-204ENST00000474020 C6orf118Q5T5N4 469 aa8.1□□□□□ -1.11
ATPAF1-204ENST00000474020 Q6ZVU0 165 aa8.1□□□□□ -1.11
ATPAF1-204ENST00000474020 SLC16A10Q8TF71 515 aa8.1□□□□□ -1.11
ATPAF1-204ENST00000474020 TSEN34Q9BSV6 310 aaKnown RBP8.1□□□□□ -1.11
ATPAF1-204ENST00000474020 NXF1Q9UBU9 619 aaKnown RBP8.1□□□□□ -1.11
ATPAF1-204ENST00000474020 CCDC141Q6ZP82 1450 aa8.1□□□□□ -1.11
ATPAF1-204ENST00000474020 KDM6BO15054 1643 aa8.1□□□□□ -1.11
ATPAF1-204ENST00000474020 ESPNB1AK53 854 aa8.09□□□□□ -1.11
ATPAF1-204ENST00000474020 APBB1O00213 710 aa8.09□□□□□ -1.11
ATPAF1-204ENST00000474020 NEFLP07196 543 aa8.09□□□□□ -1.11
ATPAF1-204ENST00000474020 FBXO45P0C2W1 286 aa8.09□□□□□ -1.11
ATPAF1-204ENST00000474020 HSPA5P11021 654 aaKnown RBP8.09□□□□□ -1.11
ATPAF1-204ENST00000474020 BMP2P12643 396 aa8.09□□□□□ -1.11
ATPAF1-204ENST00000474020 CYB5RLQ6IPT4 315 aa8.09□□□□□ -1.11
ATPAF1-204ENST00000474020 L3MBTL2Q969R5 705 aa8.09□□□□□ -1.11
ATPAF1-204ENST00000474020 SHROOM2Q13796 1616 aa8.09□□□□□ -1.11
ATPAF1-204ENST00000474020 CDC42BPAQ5VT25 1732 aa8.09□□□□□ -1.11
ATPAF1-204ENST00000474020 ARHGAP5Q13017 1502 aa8.08□□□□□ -1.12
ATPAF1-204ENST00000474020 ABCC2Q92887 1545 aa8.08□□□□□ -1.12
ATPAF1-204ENST00000474020 PREX2Q70Z35 1606 aa8.08□□□□□ -1.12
ATPAF1-204ENST00000474020 SNRKQ9NRH2 765 aa8.08□□□□□ -1.12
ATPAF1-204ENST00000474020 NDUFB9Q9Y6M9 179 aa8.08□□□□□ -1.12
ATPAF1-204ENST00000474020 NUP155O75694 1391 aa8.08□□□□□ -1.12
ATPAF1-204ENST00000474020 KIF15Q9NS87 1388 aa8.08□□□□□ -1.12
ATPAF1-204ENST00000474020 PZPP20742 1482 aa8.07□□□□□ -1.12
ATPAF1-204ENST00000474020 GPR37L1O60883 481 aa8.07□□□□□ -1.12
ATPAF1-204ENST00000474020 CBLBQ13191 982 aa8.07□□□□□ -1.12
ATPAF1-204ENST00000474020 SEPT12Q8IYM1 358 aa8.07□□□□□ -1.12
ATPAF1-204ENST00000474020 HIRIP3Q9BW71 556 aaPredicted RBP8.07□□□□□ -1.12
ATPAF1-204ENST00000474020 KDM5DQ9BY66 1539 aa8.07□□□□□ -1.12
ATPAF1-204ENST00000474020 KDM5BQ9UGL1 1544 aa8.07□□□□□ -1.12
ATPAF1-204ENST00000474020 DENND4BO75064 1496 aaPredicted RBP8.06□□□□□ -1.12
ATPAF1-204ENST00000474020 TEX14Q8IWB6 1497 aa8.06□□□□□ -1.12
ATPAF1-204ENST00000474020 SOS2Q07890 1332 aaPredicted RBP8.06□□□□□ -1.12
ATPAF1-204ENST00000474020 SOBPA7XYQ1 873 aa8.06□□□□□ -1.12
ATPAF1-204ENST00000474020 WIPF1O43516 503 aa8.06□□□□□ -1.12
ATPAF1-204ENST00000474020 MAN1A2O60476 641 aa8.06□□□□□ -1.12
ATPAF1-204ENST00000474020 NR1H3Q13133 447 aa8.06□□□□□ -1.12
ATPAF1-204ENST00000474020 PCDHB9Q9Y5E1 797 aa8.06□□□□□ -1.12
ATPAF1-204ENST00000474020 CNTLNQ9NXG0 1405 aa8.05□□□□□ -1.12
ATPAF1-204ENST00000474020 ARHGEF12Q9NZN5 1544 aa8.05□□□□□ -1.12
ATPAF1-204ENST00000474020 ERVH48-1M5A8F1 160 aa8.05□□□□□ -1.12
ATPAF1-204ENST00000474020 RAB15P59190 212 aa8.05□□□□□ -1.12
ATPAF1-204ENST00000474020 MCCD1P59942 119 aaPredicted RBP8.05□□□□□ -1.12
ATPAF1-204ENST00000474020 LCE2CQ5TA81 110 aa8.05□□□□□ -1.12
ATPAF1-204ENST00000474020 TMPRSS4Q9NRS4 437 aa8.05□□□□□ -1.12
ATPAF1-204ENST00000474020 UHRF1BP1LA0JNW5 1464 aa8.05□□□□□ -1.12
ATPAF1-204ENST00000474020 ARID4BQ4LE39 1312 aaPredicted RBP8.04□□□□□ -1.12
ATPAF1-204ENST00000474020 SPINT1O43278 529 aa8.04□□□□□ -1.12
ATPAF1-204ENST00000474020 HNRNPMP52272 730 aaKnown RBP eCLIP8.04□□□□□ -1.12
ATPAF1-204ENST00000474020 EFCAB2Q5VUJ9 269 aa8.04□□□□□ -1.12
ATPAF1-204ENST00000474020 ZNF784Q8NCA9 323 aaPredicted RBP8.04□□□□□ -1.12
ATPAF1-204ENST00000474020 ZNF592Q92610 1267 aa8.04□□□□□ -1.12
ATPAF1-204ENST00000474020 IRF7Q92985 503 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms