RNA–Protein interactions for RNA: ENST00000472760.1

PRPF40A-208, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 243 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-208ENST00000472760 RELBQ01201 579 aa8.73□□□□□ -1.01
PRPF40A-208ENST00000472760 CAPN5O15484 640 aaPredicted RBP8.72□□□□□ -1.01
PRPF40A-208ENST00000472760 TNS4Q8IZW8 715 aa8.72□□□□□ -1.01
PRPF40A-208ENST00000472760 CNKSR1Q969H4 720 aa8.72□□□□□ -1.01
PRPF40A-208ENST00000472760 XAGE2Q96GT9 111 aa8.72□□□□□ -1.01
PRPF40A-208ENST00000472760 NLRP3Q96P20 1036 aa8.72□□□□□ -1.01
PRPF40A-208ENST00000472760 SLC4A9Q96Q91 983 aa8.72□□□□□ -1.01
PRPF40A-208ENST00000472760 FAM187AA6NFU0 413 aa8.71□□□□□ -1.02
PRPF40A-208ENST00000472760 MEN1O00255 615 aa8.71□□□□□ -1.02
PRPF40A-208ENST00000472760 IL2RAP01589 272 aa8.71□□□□□ -1.02
PRPF40A-208ENST00000472760 KDF1Q8NAX2 398 aaPredicted RBP8.71□□□□□ -1.02
PRPF40A-208ENST00000472760 ESYT1Q9BSJ8 1104 aa8.71□□□□□ -1.02
PRPF40A-208ENST00000472760 ZNF395Q9H8N7 513 aaPredicted RBP8.71□□□□□ -1.02
PRPF40A-208ENST00000472760 PODXL2Q9NZ53 605 aa8.71□□□□□ -1.02
PRPF40A-208ENST00000472760 A6NJY4 79 aa8.7□□□□□ -1.02
PRPF40A-208ENST00000472760 SMTNP53814 917 aa8.7□□□□□ -1.02
PRPF40A-208ENST00000472760 CLN3Q13286 438 aa8.7□□□□□ -1.02
PRPF40A-208ENST00000472760 PHLDB3Q6NSJ2 640 aa8.7□□□□□ -1.02
PRPF40A-208ENST00000472760 MEIOBQ8N635 442 aa8.7□□□□□ -1.02
PRPF40A-208ENST00000472760 CCER1Q8TC90 406 aaPredicted RBP8.7□□□□□ -1.02
PRPF40A-208ENST00000472760 CXXC1Q9P0U4 656 aaPredicted RBP8.7□□□□□ -1.02
PRPF40A-208ENST00000472760 UPP2O95045 317 aa8.69□□□□□ -1.02
PRPF40A-208ENST00000472760 ARID4AP29374 1257 aaPredicted RBP8.69□□□□□ -1.02
PRPF40A-208ENST00000472760 WEE1P30291 646 aa8.69□□□□□ -1.02
PRPF40A-208ENST00000472760 TLR1Q15399 786 aa8.69□□□□□ -1.02
PRPF40A-208ENST00000472760 OCLNQ16625 522 aa8.69□□□□□ -1.02
PRPF40A-208ENST00000472760 SCG3Q8WXD2 468 aaKnown RBP8.69□□□□□ -1.02
PRPF40A-208ENST00000472760 TSEN34Q9BSV6 310 aaKnown RBP8.69□□□□□ -1.02
PRPF40A-208ENST00000472760 IVNS1ABPQ9Y6Y0 642 aa8.69□□□□□ -1.02
PRPF40A-208ENST00000472760 IGFBP4P22692 258 aa8.68□□□□□ -1.02
PRPF40A-208ENST00000472760 CENPCQ03188 943 aa8.68□□□□□ -1.02
PRPF40A-208ENST00000472760 GZF1Q9H116 711 aaPredicted RBP8.68□□□□□ -1.02
PRPF40A-208ENST00000472760 TSPAN10Q9H1Z9 355 aaPredicted RBP8.68□□□□□ -1.02
PRPF40A-208ENST00000472760 MTMR7Q9Y216 660 aa8.68□□□□□ -1.02
PRPF40A-208ENST00000472760 ATAD2Q6PL18 1390 aa8.68□□□□□ -1.02
PRPF40A-208ENST00000472760 GFRA3O60609 400 aa8.67□□□□□ -1.02
PRPF40A-208ENST00000472760 EPHA4P54764 986 aa8.67□□□□□ -1.02
PRPF40A-208ENST00000472760 MTFR1Q15390 333 aa8.67□□□□□ -1.02
PRPF40A-208ENST00000472760 SLC9A9Q8IVB4 645 aa8.67□□□□□ -1.02
PRPF40A-208ENST00000472760 GAS2L2Q8NHY3 880 aa8.67□□□□□ -1.02
PRPF40A-208ENST00000472760 C1orf216Q8TAB5 229 aa8.67□□□□□ -1.02
PRPF40A-208ENST00000472760 CHMP7Q8WUX9 453 aaPredicted RBP8.67□□□□□ -1.02
PRPF40A-208ENST00000472760 SCHIP1Q9P0W5 487 aaPredicted RBP8.67□□□□□ -1.02
PRPF40A-208ENST00000472760 CDK2AP1O14519 115 aa8.66□□□□□ -1.02
PRPF40A-208ENST00000472760 PPP1R12BO60237 982 aaPredicted RBP8.66□□□□□ -1.02
PRPF40A-208ENST00000472760 GTF2E1P29083 439 aaPredicted RBP8.66□□□□□ -1.02
PRPF40A-208ENST00000472760 PKDCCQ504Y2 493 aa8.66□□□□□ -1.02
PRPF40A-208ENST00000472760 TBCELQ5QJ74 424 aa8.66□□□□□ -1.02
PRPF40A-208ENST00000472760 TAS1R3Q7RTX0 852 aa8.66□□□□□ -1.02
PRPF40A-208ENST00000472760 TXNDC2Q86VQ3 553 aa8.66□□□□□ -1.02
PRPF40A-208ENST00000472760 VTI1AQ96AJ9 217 aa8.66□□□□□ -1.02
PRPF40A-208ENST00000472760 HRH3Q9Y5N1 445 aa8.66□□□□□ -1.02
PRPF40A-208ENST00000472760 FOXO3O43524 673 aa8.65□□□□□ -1.02
PRPF40A-208ENST00000472760 SCNN1AP37088 669 aa8.65□□□□□ -1.02
PRPF40A-208ENST00000472760 FOXK2Q01167 660 aa8.65□□□□□ -1.02
PRPF40A-208ENST00000472760 LINC00528Q8N1L1 170 aa8.65□□□□□ -1.02
PRPF40A-208ENST00000472760 NBPF15Q8N660 670 aa8.65□□□□□ -1.02
PRPF40A-208ENST00000472760 ZSCAN10Q96SZ4 725 aaPredicted RBP8.65□□□□□ -1.02
PRPF40A-208ENST00000472760 MKNK1Q9BUB5 465 aa8.65□□□□□ -1.02
PRPF40A-208ENST00000472760 GNEQ9Y223 722 aaKnown RBP8.65□□□□□ -1.02
PRPF40A-208ENST00000472760 CHMP3Q9Y3E7 222 aa8.65□□□□□ -1.02
PRPF40A-208ENST00000472760 NRG2O14511 850 aaPredicted RBP8.64□□□□□ -1.03
PRPF40A-208ENST00000472760 C21orf2O43822 256 aa8.64□□□□□ -1.03
PRPF40A-208ENST00000472760 DGAT1O75907 488 aa8.64□□□□□ -1.03
PRPF40A-208ENST00000472760 AVPP01185 164 aa8.64□□□□□ -1.03
PRPF40A-208ENST00000472760 BMP2P12643 396 aa8.64□□□□□ -1.03
PRPF40A-208ENST00000472760 FKBP5Q13451 457 aaPredicted RBP8.64□□□□□ -1.03
PRPF40A-208ENST00000472760 SLC27A3Q5K4L6 730 aa8.64□□□□□ -1.03
PRPF40A-208ENST00000472760 INSM2Q96T92 566 aaPredicted RBP8.64□□□□□ -1.03
PRPF40A-208ENST00000472760 FHDC1Q9C0D6 1143 aaPredicted RBP8.64□□□□□ -1.03
PRPF40A-208ENST00000472760 POLMQ9NP87 494 aaPredicted RBP8.64□□□□□ -1.03
PRPF40A-208ENST00000472760 SPINT1O43278 529 aa8.63□□□□□ -1.03
PRPF40A-208ENST00000472760 PTCD1O75127 700 aaKnown RBP8.63□□□□□ -1.03
PRPF40A-208ENST00000472760 GPC1P35052 558 aa8.63□□□□□ -1.03
PRPF40A-208ENST00000472760 PSMA6P60900 246 aaKnown RBP8.63□□□□□ -1.03
PRPF40A-208ENST00000472760 SCARF1Q14162 830 aa8.63□□□□□ -1.03
PRPF40A-208ENST00000472760 C6orf118Q5T5N4 469 aa8.63□□□□□ -1.03
PRPF40A-208ENST00000472760 TMEM214Q6NUQ4 689 aaKnown RBP8.63□□□□□ -1.03
PRPF40A-208ENST00000472760 MRPL14Q6P1L8 145 aaKnown RBP8.63□□□□□ -1.03
PRPF40A-208ENST00000472760 PURBQ96QR8 312 aaKnown RBP8.63□□□□□ -1.03
PRPF40A-208ENST00000472760 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.63□□□□□ -1.03
PRPF40A-208ENST00000472760 CABP1Q9NZU7 370 aa8.63□□□□□ -1.03
PRPF40A-208ENST00000472760 CTC1Q2NKJ3 1217 aa8.62□□□□□ -1.03
PRPF40A-208ENST00000472760 USP3Q9Y6I4 520 aa8.62□□□□□ -1.03
PRPF40A-208ENST00000472760 SERPINB4P48594 390 aa8.61□□□□□ -1.03
PRPF40A-208ENST00000472760 RNF144AP50876 292 aaPredicted RBP8.61□□□□□ -1.03
PRPF40A-208ENST00000472760 GNASQ5JWF2 1037 aa8.61□□□□□ -1.03
PRPF40A-208ENST00000472760 PPARGC1BQ86YN6 1023 aaKnown RBP8.61□□□□□ -1.03
PRPF40A-208ENST00000472760 NIFKQ9BYG3 293 aaKnown RBP8.61□□□□□ -1.03
PRPF40A-208ENST00000472760 GRIP2Q9C0E4 1043 aa8.61□□□□□ -1.03
PRPF40A-208ENST00000472760 ZNF232Q9UNY5 417 aa8.61□□□□□ -1.03
PRPF40A-208ENST00000472760 IQSEC3Q9UPP2 1182 aaPredicted RBP8.61□□□□□ -1.03
PRPF40A-208ENST00000472760 SERTM1A2A2V5 107 aa8.6□□□□□ -1.03
PRPF40A-208ENST00000472760 AXIN1O15169 862 aa8.6□□□□□ -1.03
PRPF40A-208ENST00000472760 ABL1P00519 1130 aa8.6□□□□□ -1.03
PRPF40A-208ENST00000472760 CTSOP43234 321 aaPredicted RBP8.6□□□□□ -1.03
PRPF40A-208ENST00000472760 SMCPP49901 116 aaPredicted RBP8.6□□□□□ -1.03
PRPF40A-208ENST00000472760 NAA30Q147X3 362 aaPredicted RBP8.6□□□□□ -1.03
PRPF40A-208ENST00000472760 LAPTM4AQ15012 233 aa8.6□□□□□ -1.03
PRPF40A-208ENST00000472760 TMCO4Q5TGY1 634 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms