RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 TNS1Q9HBL0 1735 aaKnown RBP13.84□□□□□ -0.19
SMC1A-206ENST00000470241 SF3B2Q13435 895 aaKnown RBP13.84□□□□□ -0.19
SMC1A-206ENST00000470241 TAF7Q15545 349 aaPredicted RBP13.84□□□□□ -0.19
SMC1A-206ENST00000470241 NGEFQ8N5V2 710 aa13.84□□□□□ -0.19
SMC1A-206ENST00000470241 DLG5Q8TDM6 1919 aa13.84□□□□□ -0.19
SMC1A-206ENST00000470241 EP400Q96L91 3159 aa13.83□□□□□ -0.19
SMC1A-206ENST00000470241 BTBD11A6QL63 1104 aa13.83□□□□□ -0.2
SMC1A-206ENST00000470241 PLSCR1O15162 318 aa13.83□□□□□ -0.2
SMC1A-206ENST00000470241 SLC39A6Q13433 755 aa13.83□□□□□ -0.2
SMC1A-206ENST00000470241 DEFB132Q7Z7B7 95 aa13.83□□□□□ -0.2
SMC1A-206ENST00000470241 MIS18AQ9NYP9 233 aa13.83□□□□□ -0.2
SMC1A-206ENST00000470241 PALLDQ8WX93 1383 aa13.83□□□□□ -0.2
SMC1A-206ENST00000470241 KCNQ3O43525 872 aa13.82□□□□□ -0.2
SMC1A-206ENST00000470241 BAG6P46379 1132 aa13.82□□□□□ -0.2
SMC1A-206ENST00000470241 EN1Q05925 392 aaPredicted RBP13.82□□□□□ -0.2
SMC1A-206ENST00000470241 SMARCC1Q92922 1105 aaPredicted RBP13.82□□□□□ -0.2
SMC1A-206ENST00000470241 CAMKK2Q96RR4 588 aa13.82□□□□□ -0.2
SMC1A-206ENST00000470241 BTAF1O14981 1849 aa13.82□□□□□ -0.2
SMC1A-206ENST00000470241 ITGB4P16144 1822 aa13.82□□□□□ -0.2
SMC1A-206ENST00000470241 ZNF521Q96K83 1311 aa13.82□□□□□ -0.2
SMC1A-206ENST00000470241 ZNF790Q6PG37 636 aa13.81□□□□□ -0.2
SMC1A-206ENST00000470241 PROM2Q8N271 834 aa13.81□□□□□ -0.2
SMC1A-206ENST00000470241 CHL1O00533 1208 aa13.8□□□□□ -0.2
SMC1A-206ENST00000470241 SOCS7O14512 581 aa13.8□□□□□ -0.2
SMC1A-206ENST00000470241 ZNF853P0CG23 659 aa13.8□□□□□ -0.2
SMC1A-206ENST00000470241 HNRNPUQ00839 825 aaKnown RBP eCLIP13.8□□□□□ -0.2
SMC1A-206ENST00000470241 CALD1Q05682 793 aaKnown RBP13.8□□□□□ -0.2
SMC1A-206ENST00000470241 EZH2Q15910 746 aaKnown RBP13.8□□□□□ -0.2
SMC1A-206ENST00000470241 TXNRD1Q16881 649 aa13.8□□□□□ -0.2
SMC1A-206ENST00000470241 WDR63Q8IWG1 891 aa13.8□□□□□ -0.2
SMC1A-206ENST00000470241 CFAP44Q96MT7 982 aa13.8□□□□□ -0.2
SMC1A-206ENST00000470241 SLC4A9Q96Q91 983 aa13.8□□□□□ -0.2
SMC1A-206ENST00000470241 BABAM1Q9NWV8 329 aa13.8□□□□□ -0.2
SMC1A-206ENST00000470241 SIPA1L3O60292 1781 aaPredicted RBP13.8□□□□□ -0.2
SMC1A-206ENST00000470241 TTC5Q8N0Z6 440 aa13.79□□□□□ -0.2
SMC1A-206ENST00000470241 IFT57Q9NWB7 429 aa13.79□□□□□ -0.2
SMC1A-206ENST00000470241 TSPYL4Q9UJ04 414 aa13.79□□□□□ -0.2
SMC1A-206ENST00000470241 LAS1LQ9Y4W2 734 aaKnown RBP13.79□□□□□ -0.2
SMC1A-206ENST00000470241 IL16Q14005 1332 aa13.79□□□□□ -0.2
SMC1A-206ENST00000470241 KCPQ6ZWJ8 1503 aa13.79□□□□□ -0.2
SMC1A-206ENST00000470241 PAPPAQ13219 1627 aa13.79□□□□□ -0.2
SMC1A-206ENST00000470241 LOC102724428A0A0B4J2F2 783 aa13.78□□□□□ -0.2
SMC1A-206ENST00000470241 PTCD1O75127 700 aaKnown RBP13.78□□□□□ -0.2
SMC1A-206ENST00000470241 SIK1P57059 783 aa13.78□□□□□ -0.2
SMC1A-206ENST00000470241 ZNF496Q96IT1 587 aaPredicted RBP13.78□□□□□ -0.2
SMC1A-206ENST00000470241 RBM42Q9BTD8 480 aaKnown RBP13.78□□□□□ -0.2
SMC1A-206ENST00000470241 SPINK5Q9NQ38 1064 aaPredicted RBP13.78□□□□□ -0.2
SMC1A-206ENST00000470241 LRRC4BQ9NT99 713 aa13.78□□□□□ -0.2
SMC1A-206ENST00000470241 VIRMAQ69YN4 1812 aaKnown RBP13.78□□□□□ -0.2
SMC1A-206ENST00000470241 KCNQ4P56696 695 aa13.77□□□□□ -0.21
SMC1A-206ENST00000470241 EIF4A1P60842 406 aaKnown RBP13.77□□□□□ -0.21
SMC1A-206ENST00000470241 GNAI1P63096 354 aa13.77□□□□□ -0.21
SMC1A-206ENST00000470241 SLC27A3Q5K4L6 730 aa13.77□□□□□ -0.21
SMC1A-206ENST00000470241 MBIPQ9NS73 344 aa13.77□□□□□ -0.21
SMC1A-206ENST00000470241 CCNL1Q9UK58 526 aaPredicted RBP13.77□□□□□ -0.21
SMC1A-206ENST00000470241 ITPK1Q13572 414 aa13.76□□□□□ -0.21
SMC1A-206ENST00000470241 FMNL2Q96PY5 1086 aa13.76□□□□□ -0.21
SMC1A-206ENST00000470241 KAT6BQ8WYB5 2073 aa13.75□□□□□ -0.21
SMC1A-206ENST00000470241 HEG1Q9ULI3 1381 aa13.75□□□□□ -0.21
SMC1A-206ENST00000470241 ATP6V1AP38606 617 aa13.75□□□□□ -0.21
SMC1A-206ENST00000470241 VSIG10Q8N0Z9 540 aa13.75□□□□□ -0.21
SMC1A-206ENST00000470241 TSR2Q969E8 191 aaKnown RBP13.75□□□□□ -0.21
SMC1A-206ENST00000470241 RGPD3A6NKT7 1758 aaPredicted RBP13.75□□□□□ -0.21
SMC1A-206ENST00000470241 RGPD4Q7Z3J3 1758 aa13.75□□□□□ -0.21
SMC1A-206ENST00000470241 LY75O60449 1722 aa13.75□□□□□ -0.21
SMC1A-206ENST00000470241 KDM3BQ7LBC6 1761 aa13.74□□□□□ -0.21
SMC1A-206ENST00000470241 GOLGA2Q08379 1002 aa13.74□□□□□ -0.21
SMC1A-206ENST00000470241 DNAJC10Q8IXB1 793 aa13.74□□□□□ -0.21
SMC1A-206ENST00000470241 LINC00116Q8NCU8 138 aa13.74□□□□□ -0.21
SMC1A-206ENST00000470241 CDCA7LQ96GN5 454 aa13.74□□□□□ -0.21
SMC1A-206ENST00000470241 UBR2Q8IWV8 1755 aa13.73□□□□□ -0.21
SMC1A-206ENST00000470241 ZBED9Q6R2W3 1325 aa13.73□□□□□ -0.21
SMC1A-206ENST00000470241 FANCIQ9NVI1 1328 aa13.73□□□□□ -0.21
SMC1A-206ENST00000470241 PRAMEF22A3QJZ6 481 aa13.73□□□□□ -0.21
SMC1A-206ENST00000470241 SLFN5Q08AF3 891 aa13.73□□□□□ -0.21
SMC1A-206ENST00000470241 KRT24Q2M2I5 525 aa13.73□□□□□ -0.21
SMC1A-206ENST00000470241 E9PSI1 815 aa13.72□□□□□ -0.21
SMC1A-206ENST00000470241 GIGYF1O75420 1035 aaPredicted RBP13.72□□□□□ -0.21
SMC1A-206ENST00000470241 SNRPA1P09661 255 aaKnown RBP13.72□□□□□ -0.21
SMC1A-206ENST00000470241 CYP19A1P11511 503 aaPredicted RBP13.71□□□□□ -0.21
SMC1A-206ENST00000470241 TRMT2AQ8IZ69 625 aaKnown RBP13.71□□□□□ -0.21
SMC1A-206ENST00000470241 MYH16Q9H6N6 1097 aa13.71□□□□□ -0.21
SMC1A-206ENST00000470241 USP16Q9Y5T5 823 aa13.71□□□□□ -0.21
SMC1A-206ENST00000470241 RREB1Q92766 1687 aa13.71□□□□□ -0.21
SMC1A-206ENST00000470241 ZNF831Q5JPB2 1677 aa13.7□□□□□ -0.22
SMC1A-206ENST00000470241 ZNF827Q17R98 1081 aa13.7□□□□□ -0.22
SMC1A-206ENST00000470241 C8orf58Q8NAV2 365 aa13.7□□□□□ -0.22
SMC1A-206ENST00000470241 AKT1S1Q96B36 256 aa13.7□□□□□ -0.22
SMC1A-206ENST00000470241 TEX13AQ9BXU3 409 aaPredicted RBP13.7□□□□□ -0.22
SMC1A-206ENST00000470241 ANO8Q9HCE9 1232 aaPredicted RBP13.7□□□□□ -0.22
SMC1A-206ENST00000470241 CICQ96RK0 1608 aaPredicted RBP13.7□□□□□ -0.22
SMC1A-206ENST00000470241 TJP1Q07157 1748 aa13.7□□□□□ -0.22
SMC1A-206ENST00000470241 DUSP27Q5VZP5 1158 aa13.69□□□□□ -0.22
SMC1A-206ENST00000470241 TSPYL6Q8N831 410 aa13.69□□□□□ -0.22
SMC1A-206ENST00000470241 YTHDC1Q96MU7 727 aaKnown RBP13.69□□□□□ -0.22
SMC1A-206ENST00000470241 NUP188Q5SRE5 1749 aa13.69□□□□□ -0.22
SMC1A-206ENST00000470241 CNTNAP4Q9C0A0 1308 aa13.68□□□□□ -0.22
SMC1A-206ENST00000470241 ELL2O00472 640 aaPredicted RBP13.68□□□□□ -0.22
SMC1A-206ENST00000470241 STARD3NLO95772 234 aa13.68□□□□□ -0.22
SMC1A-206ENST00000470241 HOXB7P09629 217 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms