RNA–Protein interactions for RNA: ENST00000469356.3

SREBF1-208, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 3

Gene SREBF1, Length 1,323 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-208ENST00000469356 TAF7Q15545 349 aaPredicted RBP30.02■■■□□ 2.4
SREBF1-208ENST00000469356 UPF1Q92900 1129 aaKnown RBP eCLIP30.02■■■□□ 2.4
SREBF1-208ENST00000469356 MRC1P22897 1456 aa30.02■■■□□ 2.4
SREBF1-208ENST00000469356 BTAF1O14981 1849 aa30.02■■■□□ 2.4
SREBF1-208ENST00000469356 HMGB2P26583 209 aaKnown RBP30■■■□□ 2.39
SREBF1-208ENST00000469356 BTBD11A6QL63 1104 aa29.98■■■□□ 2.39
SREBF1-208ENST00000469356 PLSCR1O15162 318 aa29.98■■■□□ 2.39
SREBF1-208ENST00000469356 BABAM1Q9NWV8 329 aa29.98■■■□□ 2.39
SREBF1-208ENST00000469356 SALL2Q9Y467 1007 aaPredicted RBP29.98■■■□□ 2.39
SREBF1-208ENST00000469356 WWC1Q8IX03 1113 aa29.97■■■□□ 2.39
SREBF1-208ENST00000469356 TTC5Q8N0Z6 440 aa29.97■■■□□ 2.39
SREBF1-208ENST00000469356 TNS1Q9HBL0 1735 aaKnown RBP29.97■■■□□ 2.39
SREBF1-208ENST00000469356 PTF1AQ7RTS3 328 aa29.96■■■□□ 2.39
SREBF1-208ENST00000469356 WDR63Q8IWG1 891 aa29.96■■■□□ 2.39
SREBF1-208ENST00000469356 THUMPD2Q9BTF0 503 aaKnown RBP29.96■■■□□ 2.39
SREBF1-208ENST00000469356 SIPA1L3O60292 1781 aaPredicted RBP29.95■■■□□ 2.39
SREBF1-208ENST00000469356 ATG3Q9NT62 314 aa29.94■■■□□ 2.38
SREBF1-208ENST00000469356 SENP3-EIF4A1A0A087X0R7 540 aa29.93■■■□□ 2.38
SREBF1-208ENST00000469356 GNAI1P63096 354 aa29.93■■■□□ 2.38
SREBF1-208ENST00000469356 ASAP1Q9ULH1 1129 aa29.93■■■□□ 2.38
SREBF1-208ENST00000469356 PALLDQ8WX93 1383 aa29.92■■■□□ 2.38
SREBF1-208ENST00000469356 IL16Q14005 1332 aa29.92■■■□□ 2.38
SREBF1-208ENST00000469356 HNRNPUQ00839 825 aaKnown RBP eCLIP29.92■■■□□ 2.38
SREBF1-208ENST00000469356 EP400Q96L91 3159 aa29.91■■■□□ 2.38
SREBF1-208ENST00000469356 ZNF790Q6PG37 636 aa29.91■■■□□ 2.38
SREBF1-208ENST00000469356 CFAP44Q96MT7 982 aa29.91■■■□□ 2.38
SREBF1-208ENST00000469356 IFT57Q9NWB7 429 aa29.91■■■□□ 2.38
SREBF1-208ENST00000469356 TSPYL4Q9UJ04 414 aa29.91■■■□□ 2.38
SREBF1-208ENST00000469356 LAS1LQ9Y4W2 734 aaKnown RBP29.91■■■□□ 2.38
SREBF1-208ENST00000469356 RGPD3A6NKT7 1758 aaPredicted RBP29.89■■■□□ 2.38
SREBF1-208ENST00000469356 RGPD4Q7Z3J3 1758 aa29.89■■■□□ 2.38
SREBF1-208ENST00000469356 SLC27A3Q5K4L6 730 aa29.89■■■□□ 2.38
SREBF1-208ENST00000469356 EN1Q05925 392 aaPredicted RBP29.88■■■□□ 2.37
SREBF1-208ENST00000469356 SLC39A6Q13433 755 aa29.88■■■□□ 2.37
SREBF1-208ENST00000469356 RBM42Q9BTD8 480 aaKnown RBP29.88■■■□□ 2.37
SREBF1-208ENST00000469356 SOCS7O14512 581 aa29.87■■■□□ 2.37
SREBF1-208ENST00000469356 FMNL2Q96PY5 1086 aa29.87■■■□□ 2.37
SREBF1-208ENST00000469356 CHL1O00533 1208 aa29.86■■■□□ 2.37
SREBF1-208ENST00000469356 LOC102724428A0A0B4J2F2 783 aa29.85■■■□□ 2.37
SREBF1-208ENST00000469356 PTCD1O75127 700 aaKnown RBP29.85■■■□□ 2.37
SREBF1-208ENST00000469356 SIK1P57059 783 aa29.85■■■□□ 2.37
SREBF1-208ENST00000469356 TXNRD1Q16881 649 aa29.85■■■□□ 2.37
SREBF1-208ENST00000469356 CAMKK2Q96RR4 588 aa29.85■■■□□ 2.37
SREBF1-208ENST00000469356 PAPPAQ13219 1627 aa29.85■■■□□ 2.37
SREBF1-208ENST00000469356 LY75O60449 1722 aa29.84■■■□□ 2.37
SREBF1-208ENST00000469356 DEFB132Q7Z7B7 95 aa29.84■■■□□ 2.37
SREBF1-208ENST00000469356 MIS18AQ9NYP9 233 aa29.84■■■□□ 2.37
SREBF1-208ENST00000469356 CCNL1Q9UK58 526 aaPredicted RBP29.84■■■□□ 2.37
SREBF1-208ENST00000469356 GOLGA2Q08379 1002 aa29.83■■■□□ 2.37
SREBF1-208ENST00000469356 VSIG10Q8N0Z9 540 aa29.83■■■□□ 2.37
SREBF1-208ENST00000469356 MYH16Q9H6N6 1097 aa29.83■■■□□ 2.37
SREBF1-208ENST00000469356 ZNF853P0CG23 659 aa29.82■■■□□ 2.36
SREBF1-208ENST00000469356 ATP6V1AP38606 617 aa29.82■■■□□ 2.36
SREBF1-208ENST00000469356 EZH2Q15910 746 aaKnown RBP29.82■■■□□ 2.36
SREBF1-208ENST00000469356 TEX13AQ9BXU3 409 aaPredicted RBP29.82■■■□□ 2.36
SREBF1-208ENST00000469356 KDM3BQ7LBC6 1761 aa29.81■■■□□ 2.36
SREBF1-208ENST00000469356 ZNF521Q96K83 1311 aa29.81■■■□□ 2.36
SREBF1-208ENST00000469356 UBR2Q8IWV8 1755 aa29.79■■■□□ 2.36
SREBF1-208ENST00000469356 ZNF496Q96IT1 587 aaPredicted RBP29.78■■■□□ 2.36
SREBF1-208ENST00000469356 MBIPQ9NS73 344 aa29.78■■■□□ 2.36
SREBF1-208ENST00000469356 HEG1Q9ULI3 1381 aa29.78■■■□□ 2.36
SREBF1-208ENST00000469356 ZNF831Q5JPB2 1677 aa29.77■■■□□ 2.36
SREBF1-208ENST00000469356 E9PSI1 815 aa29.77■■■□□ 2.36
SREBF1-208ENST00000469356 KCNQ3O43525 872 aa29.77■■■□□ 2.36
SREBF1-208ENST00000469356 SNRPA1P09661 255 aaKnown RBP29.77■■■□□ 2.36
SREBF1-208ENST00000469356 EIF4A1P60842 406 aaKnown RBP29.77■■■□□ 2.36
SREBF1-208ENST00000469356 ZBED9Q6R2W3 1325 aa29.77■■■□□ 2.36
SREBF1-208ENST00000469356 KCPQ6ZWJ8 1503 aa29.76■■■□□ 2.35
SREBF1-208ENST00000469356 PROM2Q8N271 834 aa29.75■■■□□ 2.35
SREBF1-208ENST00000469356 CHMP4AQ9BY43 222 aa29.75■■■□□ 2.35
SREBF1-208ENST00000469356 NBPF14Q5TI25 921 aa29.74■■■□□ 2.35
SREBF1-208ENST00000469356 STARD3NLO95772 234 aa29.73■■■□□ 2.35
SREBF1-208ENST00000469356 RREB1Q92766 1687 aa29.72■■■□□ 2.35
SREBF1-208ENST00000469356 LRRC4BQ9NT99 713 aa29.71■■■□□ 2.35
SREBF1-208ENST00000469356 SOS1Q07889 1333 aaPredicted RBP29.7■■■□□ 2.35
SREBF1-208ENST00000469356 GIGYF1O75420 1035 aaPredicted RBP29.7■■■□□ 2.34
SREBF1-208ENST00000469356 HOXB7P09629 217 aa29.7■■■□□ 2.34
SREBF1-208ENST00000469356 SLFN5Q08AF3 891 aa29.7■■■□□ 2.34
SREBF1-208ENST00000469356 DNAJC10Q8IXB1 793 aa29.7■■■□□ 2.34
SREBF1-208ENST00000469356 TSR2Q969E8 191 aaKnown RBP29.7■■■□□ 2.34
SREBF1-208ENST00000469356 SLC4A9Q96Q91 983 aa29.7■■■□□ 2.34
SREBF1-208ENST00000469356 TAF1LQ8IZX4 1826 aa29.69■■■□□ 2.34
SREBF1-208ENST00000469356 CICQ96RK0 1608 aaPredicted RBP29.69■■■□□ 2.34
SREBF1-208ENST00000469356 FANCIQ9NVI1 1328 aa29.69■■■□□ 2.34
SREBF1-208ENST00000469356 ITPK1Q13572 414 aa29.69■■■□□ 2.34
SREBF1-208ENST00000469356 C5P01031 1676 aa29.68■■■□□ 2.34
SREBF1-208ENST00000469356 KCNQ4P56696 695 aa29.68■■■□□ 2.34
SREBF1-208ENST00000469356 RC3H1Q5TC82 1133 aaKnown RBP29.68■■■□□ 2.34
SREBF1-208ENST00000469356 STK32BQ9NY57 414 aa29.68■■■□□ 2.34
SREBF1-208ENST00000469356 AK7Q96M32 723 aa29.66■■■□□ 2.34
SREBF1-208ENST00000469356 NUP188Q5SRE5 1749 aa29.65■■■□□ 2.34
SREBF1-208ENST00000469356 CNTNAP4Q9C0A0 1308 aa29.65■■■□□ 2.34
SREBF1-208ENST00000469356 DUSP27Q5VZP5 1158 aa29.65■■■□□ 2.34
SREBF1-208ENST00000469356 LINC00116Q8NCU8 138 aa29.65■■■□□ 2.34
SREBF1-208ENST00000469356 SPINK5Q9NQ38 1064 aaPredicted RBP29.65■■■□□ 2.34
SREBF1-208ENST00000469356 TJP1Q07157 1748 aa29.64■■■□□ 2.34
SREBF1-208ENST00000469356 CYP19A1P11511 503 aaPredicted RBP29.64■■■□□ 2.34
SREBF1-208ENST00000469356 YTHDC1Q96MU7 727 aaKnown RBP29.64■■■□□ 2.34
SREBF1-208ENST00000469356 NPM2Q86SE8 214 aaKnown RBP29.63■■■□□ 2.33
SREBF1-208ENST00000469356 USP16Q9Y5T5 823 aa29.63■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms