RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 ARID5BQ14865 1188 aa6.04□□□□□ -1.44
TMEM39A-204ENST00000468545 SLFNL1Q499Z3 407 aa6.04□□□□□ -1.44
TMEM39A-204ENST00000468545 RNF20Q5VTR2 975 aa6.04□□□□□ -1.44
TMEM39A-204ENST00000468545 ZNF787Q6DD87 383 aa6.04□□□□□ -1.44
TMEM39A-204ENST00000468545 CCDC82Q8N4S0 544 aa6.04□□□□□ -1.44
TMEM39A-204ENST00000468545 AFAP1Q8N556 730 aa6.04□□□□□ -1.44
TMEM39A-204ENST00000468545 NFATC2IPQ8NCF5 419 aa6.04□□□□□ -1.44
TMEM39A-204ENST00000468545 SNIP1Q8TAD8 396 aaKnown RBP6.04□□□□□ -1.44
TMEM39A-204ENST00000468545 KCTD15Q96SI1 283 aaPredicted RBP6.04□□□□□ -1.44
TMEM39A-204ENST00000468545 SERPINA10Q9UK55 444 aa6.04□□□□□ -1.44
TMEM39A-204ENST00000468545 MAPKBP1O60336 1514 aa6.04□□□□□ -1.44
TMEM39A-204ENST00000468545 CAMSAP2Q08AD1 1489 aa6.03□□□□□ -1.44
TMEM39A-204ENST00000468545 CDC42BPAQ5VT25 1732 aa6.03□□□□□ -1.44
TMEM39A-204ENST00000468545 GIGYF1O75420 1035 aaPredicted RBP6.03□□□□□ -1.44
TMEM39A-204ENST00000468545 CCDC125Q86Z20 511 aa6.03□□□□□ -1.44
TMEM39A-204ENST00000468545 RNF135Q8IUD6 432 aa6.03□□□□□ -1.44
TMEM39A-204ENST00000468545 CYP4X1Q8N118 509 aa6.03□□□□□ -1.44
TMEM39A-204ENST00000468545 PTPRKQ15262 1439 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 AKNAQ7Z591 1439 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 SCAPERQ9BY12 1400 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 ITSN2Q9NZM3 1697 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 RAPGEF3O95398 923 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 ALDH1A1P00352 501 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 GRM5P41594 1212 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 NR5A1Q13285 461 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 INTS6LQ5JSJ4 861 aaKnown RBP6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 PHTF2Q8N3S3 785 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 PPP1R12CQ9BZL4 782 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 TOR4AQ9NXH8 423 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 TSPOAP1O95153 1857 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 MYO5CQ9NQX4 1742 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 CDC42BPBQ9Y5S2 1711 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 FANCAO15360 1455 aa6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 TCOF1Q13428 1488 aaKnown RBP6.02□□□□□ -1.45
TMEM39A-204ENST00000468545 ABCC5O15440 1437 aa6.01□□□□□ -1.45
TMEM39A-204ENST00000468545 ABCA9Q8IUA7 1624 aa6.01□□□□□ -1.45
TMEM39A-204ENST00000468545 TTC24A2A3L6 582 aaPredicted RBP6.01□□□□□ -1.45
TMEM39A-204ENST00000468545 PIK3CDO00329 1044 aa6.01□□□□□ -1.45
TMEM39A-204ENST00000468545 ATP9BO43861 1147 aa6.01□□□□□ -1.45
TMEM39A-204ENST00000468545 DHX9Q08211 1270 aaKnown RBP6.01□□□□□ -1.45
TMEM39A-204ENST00000468545 TRIM52Q96A61 297 aa6.01□□□□□ -1.45
TMEM39A-204ENST00000468545 WASF2Q9Y6W5 498 aa6.01□□□□□ -1.45
TMEM39A-204ENST00000468545 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.01□□□□□ -1.45
TMEM39A-204ENST00000468545 SPAG9O60271 1321 aaKnown RBP6□□□□□ -1.45
TMEM39A-204ENST00000468545 DAPK1P53355 1430 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 TRAPPC8Q9Y2L5 1435 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 PREX2Q70Z35 1606 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 PALM3A6NDB9 673 aaPredicted RBP6□□□□□ -1.45
TMEM39A-204ENST00000468545 ST8SIA5O15466 376 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 SKIP12755 728 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 MAP7D1Q3KQU3 841 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 TBC1D9Q6ZT07 1266 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 CCDC116Q8IYX3 515 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 PLPP7Q8NBV4 271 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 DOLKQ9UPQ8 538 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 MAFBQ9Y5Q3 323 aaPredicted RBP6□□□□□ -1.45
TMEM39A-204ENST00000468545 ADGRL1O94910 1474 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 GLI2P10070 1586 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 SAMD9LQ8IVG5 1584 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 DIP2BQ9P265 1576 aa6□□□□□ -1.45
TMEM39A-204ENST00000468545 ARHGEF12Q9NZN5 1544 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 PLEKHH2Q8IVE3 1493 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 USP17L5A8MUK1 530 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 J3QL48 77 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 NR3C2P08235 984 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 RAB15P59190 212 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 NNTQ13423 1086 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 CFAP70Q5T0N1 1121 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 PLEKHM2Q8IWE5 1019 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 CCER1Q8TC90 406 aaPredicted RBP5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 CCDC85AQ96PX6 553 aaPredicted RBP5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 TFIP11Q9UBB9 837 aaKnown RBP5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 PCDHB11Q9Y5F2 797 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 SYCP2Q9BX26 1530 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 SETD5Q9C0A6 1442 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 KIAA1107Q9UPP5 1409 aa5.99□□□□□ -1.45
TMEM39A-204ENST00000468545 MBD5Q9P267 1494 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 ANKRD30AQ9BXX3 1397 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 USP17L3A6NCW0 530 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 USP17L4A6NCW7 530 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 POTECB2RU33 542 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 ERVH48-1M5A8F1 160 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 LZTS3O60299 673 aaPredicted RBP5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 SMPD1P17405 629 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 USP17L2Q6R6M4 530 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 USP17L1Q7RTZ2 530 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 ARID3AQ99856 593 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 AAASQ9NRG9 546 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 EMILIN1Q9Y6C2 1016 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 C9orf84Q5VXU9 1444 aa5.98□□□□□ -1.45
TMEM39A-204ENST00000468545 DENND4BO75064 1496 aaPredicted RBP5.97□□□□□ -1.45
TMEM39A-204ENST00000468545 CCDC141Q6ZP82 1450 aa5.97□□□□□ -1.45
TMEM39A-204ENST00000468545 TEX14Q8IWB6 1497 aa5.97□□□□□ -1.45
TMEM39A-204ENST00000468545 RAB3GAP2Q9H2M9 1393 aa5.97□□□□□ -1.45
TMEM39A-204ENST00000468545 MAP3K4Q9Y6R4 1608 aa5.97□□□□□ -1.45
TMEM39A-204ENST00000468545 PPP1R26Q5T8A7 1209 aaPredicted RBP5.97□□□□□ -1.45
TMEM39A-204ENST00000468545 PGPEP1Q9NXJ5 209 aa5.97□□□□□ -1.45
TMEM39A-204ENST00000468545 KIF13AQ9H1H9 1805 aa5.97□□□□□ -1.45
TMEM39A-204ENST00000468545 NEO1Q92859 1461 aa5.96□□□□□ -1.45
TMEM39A-204ENST00000468545 DNMT1P26358 1616 aaKnown RBP5.96□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms