RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 XAGE2Q96GT9 111 aa9.23□□□□□ -0.93
CCDC88A-210ENST00000468534 GDF11O95390 407 aa9.22□□□□□ -0.93
CCDC88A-210ENST00000468534 SEMA3FQ13275 785 aa9.22□□□□□ -0.93
CCDC88A-210ENST00000468534 MCM6Q14566 821 aa9.22□□□□□ -0.93
CCDC88A-210ENST00000468534 TMEM151AQ8N4L1 468 aa9.22□□□□□ -0.93
CCDC88A-210ENST00000468534 FHDC1Q9C0D6 1143 aaPredicted RBP9.22□□□□□ -0.93
CCDC88A-210ENST00000468534 ETNK1Q9HBU6 452 aa9.22□□□□□ -0.93
CCDC88A-210ENST00000468534 HRH3Q9Y5N1 445 aa9.22□□□□□ -0.93
CCDC88A-210ENST00000468534 IRS1P35568 1242 aa9.21□□□□□ -0.94
CCDC88A-210ENST00000468534 TLR1Q15399 786 aa9.21□□□□□ -0.94
CCDC88A-210ENST00000468534 WASHC4Q2M389 1173 aa9.21□□□□□ -0.94
CCDC88A-210ENST00000468534 C4orf17Q53FE4 359 aa9.21□□□□□ -0.94
CCDC88A-210ENST00000468534 MX2P20592 715 aa9.2□□□□□ -0.94
CCDC88A-210ENST00000468534 RUBCNLQ9H714 662 aa9.2□□□□□ -0.94
CCDC88A-210ENST00000468534 A0A1B0GTH6 734 aa9.19□□□□□ -0.94
CCDC88A-210ENST00000468534 THBS1P07996 1170 aa9.19□□□□□ -0.94
CCDC88A-210ENST00000468534 PLPP7Q8NBV4 271 aa9.19□□□□□ -0.94
CCDC88A-210ENST00000468534 SIRT1Q96EB6 747 aa9.19□□□□□ -0.94
CCDC88A-210ENST00000468534 CSB-PGBD3P0DP91 1061 aa9.18□□□□□ -0.94
CCDC88A-210ENST00000468534 PGBD3Q8N328 593 aa9.18□□□□□ -0.94
CCDC88A-210ENST00000468534 ENAMQ9NRM1 1142 aa9.18□□□□□ -0.94
CCDC88A-210ENST00000468534 PLA2G4AP47712 749 aa9.17□□□□□ -0.94
CCDC88A-210ENST00000468534 GDF10P55107 478 aa9.17□□□□□ -0.94
CCDC88A-210ENST00000468534 RHBDD1Q8TEB9 315 aa9.17□□□□□ -0.94
CCDC88A-210ENST00000468534 ACDQ96AP0 544 aa9.17□□□□□ -0.94
CCDC88A-210ENST00000468534 SCARF2Q96GP6 870 aaPredicted RBP9.17□□□□□ -0.94
CCDC88A-210ENST00000468534 CHIC2Q9UKJ5 165 aa9.17□□□□□ -0.94
CCDC88A-210ENST00000468534 NSFL1CQ9UNZ2 370 aaKnown RBP9.17□□□□□ -0.94
CCDC88A-210ENST00000468534 COG6Q9Y2V7 657 aa9.17□□□□□ -0.94
CCDC88A-210ENST00000468534 PIK3CDO00329 1044 aa9.16□□□□□ -0.94
CCDC88A-210ENST00000468534 BCRP11274 1271 aa9.16□□□□□ -0.94
CCDC88A-210ENST00000468534 MSX1P28360 303 aa9.16□□□□□ -0.94
CCDC88A-210ENST00000468534 SCNN1DP51172 638 aa9.16□□□□□ -0.94
CCDC88A-210ENST00000468534 NEDD1Q8NHV4 660 aa9.16□□□□□ -0.94
CCDC88A-210ENST00000468534 MAP7D1Q3KQU3 841 aa9.15□□□□□ -0.94
CCDC88A-210ENST00000468534 SERTAD1Q9UHV2 236 aa9.15□□□□□ -0.94
CCDC88A-210ENST00000468534 INHAP05111 366 aa9.14□□□□□ -0.95
CCDC88A-210ENST00000468534 PPARGC1BQ86YN6 1023 aaKnown RBP9.14□□□□□ -0.95
CCDC88A-210ENST00000468534 SOX11P35716 441 aa9.13□□□□□ -0.95
CCDC88A-210ENST00000468534 EFHC2Q5JST6 749 aa9.13□□□□□ -0.95
CCDC88A-210ENST00000468534 AIDAQ96BJ3 306 aa9.13□□□□□ -0.95
CCDC88A-210ENST00000468534 POM121Q96HA1 1249 aa9.13□□□□□ -0.95
CCDC88A-210ENST00000468534 CNTNAP5Q8WYK1 1306 aa9.12□□□□□ -0.95
CCDC88A-210ENST00000468534 SKIP12755 728 aa9.12□□□□□ -0.95
CCDC88A-210ENST00000468534 TBC1D9Q6ZT07 1266 aa9.12□□□□□ -0.95
CCDC88A-210ENST00000468534 ABHD17AQ96GS6 310 aa9.12□□□□□ -0.95
CCDC88A-210ENST00000468534 CFHR5Q9BXR6 569 aa9.12□□□□□ -0.95
CCDC88A-210ENST00000468534 PHF24Q9UPV7 400 aa9.12□□□□□ -0.95
CCDC88A-210ENST00000468534 MAP2K3P46734 347 aa9.11□□□□□ -0.95
CCDC88A-210ENST00000468534 GPAT2Q6NUI2 795 aa9.11□□□□□ -0.95
CCDC88A-210ENST00000468534 KANK3Q6NY19 840 aa9.11□□□□□ -0.95
CCDC88A-210ENST00000468534 OXCT2Q9BYC2 517 aaPredicted RBP9.11□□□□□ -0.95
CCDC88A-210ENST00000468534 SMTNP53814 917 aa9.1□□□□□ -0.95
CCDC88A-210ENST00000468534 UBAP2LQ14157 1087 aaKnown RBP9.1□□□□□ -0.95
CCDC88A-210ENST00000468534 PODNQ7Z5L7 613 aa9.1□□□□□ -0.95
CCDC88A-210ENST00000468534 LBRQ14739 615 aaKnown RBP9.09□□□□□ -0.95
CCDC88A-210ENST00000468534 EML3Q32P44 896 aa9.09□□□□□ -0.95
CCDC88A-210ENST00000468534 WWC1Q8IX03 1113 aa9.09□□□□□ -0.95
CCDC88A-210ENST00000468534 KLRG1Q96E93 195 aa9.09□□□□□ -0.95
CCDC88A-210ENST00000468534 NIFKQ9BYG3 293 aaKnown RBP9.09□□□□□ -0.95
CCDC88A-210ENST00000468534 DNMT3AQ9Y6K1 912 aaPredicted RBP9.09□□□□□ -0.95
CCDC88A-210ENST00000468534 TMEM229AB2RXF0 380 aa9.08□□□□□ -0.96
CCDC88A-210ENST00000468534 OIP5O43482 229 aa9.08□□□□□ -0.96
CCDC88A-210ENST00000468534 RAD21O60216 631 aa9.08□□□□□ -0.96
CCDC88A-210ENST00000468534 BMP4P12644 408 aa9.08□□□□□ -0.96
CCDC88A-210ENST00000468534 PSME1Q06323 249 aa9.08□□□□□ -0.96
CCDC88A-210ENST00000468534 ATXN7L1Q9ULK2 861 aaPredicted RBP9.08□□□□□ -0.96
CCDC88A-210ENST00000468534 PHF20L1A8MW92 1017 aa9.07□□□□□ -0.96
CCDC88A-210ENST00000468534 BNIP3LO60238 219 aa9.07□□□□□ -0.96
CCDC88A-210ENST00000468534 ATP4AP20648 1035 aa9.07□□□□□ -0.96
CCDC88A-210ENST00000468534 FGFR3P22607 806 aa9.07□□□□□ -0.96
CCDC88A-210ENST00000468534 DEPDC4Q8N2C3 294 aa9.07□□□□□ -0.96
CCDC88A-210ENST00000468534 GALNT6Q8NCL4 622 aa9.07□□□□□ -0.96
CCDC88A-210ENST00000468534 CRISPLD1Q9H336 500 aa9.07□□□□□ -0.96
CCDC88A-210ENST00000468534 ALG2Q9H553 416 aa9.07□□□□□ -0.96
CCDC88A-210ENST00000468534 NOD1Q9Y239 953 aa9.07□□□□□ -0.96
CCDC88A-210ENST00000468534 USP3Q9Y6I4 520 aa9.07□□□□□ -0.96
CCDC88A-210ENST00000468534 UBTFP17480 764 aaKnown RBP9.06□□□□□ -0.96
CCDC88A-210ENST00000468534 GTF2IP78347 998 aa9.06□□□□□ -0.96
CCDC88A-210ENST00000468534 NCOA4Q13772 614 aa9.06□□□□□ -0.96
CCDC88A-210ENST00000468534 ARSJQ5FYB0 599 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-210ENST00000468534 C1orf229Q6ZS94 237 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-210ENST00000468534 BEND7Q8N7W2 519 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-210ENST00000468534 CABP1Q9NZU7 370 aa9.06□□□□□ -0.96
CCDC88A-210ENST00000468534 PCDHGA11Q9Y5H2 935 aa9.06□□□□□ -0.96
CCDC88A-210ENST00000468534 A6NJY4 79 aa9.05□□□□□ -0.96
CCDC88A-210ENST00000468534 SHISA8B8ZZ34 492 aa9.05□□□□□ -0.96
CCDC88A-210ENST00000468534 CTBSQ01459 385 aa9.05□□□□□ -0.96
CCDC88A-210ENST00000468534 NBPF1Q3BBV0 1214 aa9.05□□□□□ -0.96
CCDC88A-210ENST00000468534 ZCCHC2Q9C0B9 1178 aaKnown RBP9.05□□□□□ -0.96
CCDC88A-210ENST00000468534 RRAGCQ9HB90 399 aa9.05□□□□□ -0.96
CCDC88A-210ENST00000468534 PARP3Q9Y6F1 533 aa9.05□□□□□ -0.96
CCDC88A-210ENST00000468534 DCDC2BA2VCK2 349 aa9.04□□□□□ -0.96
CCDC88A-210ENST00000468534 POM121CA8CG34 1229 aa9.04□□□□□ -0.96
CCDC88A-210ENST00000468534 C2CD2LO14523 706 aa9.04□□□□□ -0.96
CCDC88A-210ENST00000468534 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.04□□□□□ -0.96
CCDC88A-210ENST00000468534 SLC4A9Q96Q91 983 aa9.04□□□□□ -0.96
CCDC88A-210ENST00000468534 NDFIP2Q9NV92 336 aa9.04□□□□□ -0.96
CCDC88A-210ENST00000468534 DNAAF2Q9NVR5 837 aaKnown RBP9.04□□□□□ -0.96
CCDC88A-210ENST00000468534 A0A1W2PNR3 127 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms