RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 MSH5O43196 834 aa30.81■■■□□ 2.52
PTPN4-208ENST00000460289 COL23A1Q86Y22 540 aaPredicted RBP30.8■■■□□ 2.52
PTPN4-208ENST00000460289 RBM42Q9BTD8 480 aaKnown RBP30.79■■■□□ 2.52
PTPN4-208ENST00000460289 TAF1LQ8IZX4 1826 aa30.78■■■□□ 2.52
PTPN4-208ENST00000460289 DDX10Q13206 875 aaKnown RBP30.78■■■□□ 2.52
PTPN4-208ENST00000460289 LINC00116Q8NCU8 138 aa30.78■■■□□ 2.52
PTPN4-208ENST00000460289 GAS2L2Q8NHY3 880 aa30.78■■■□□ 2.52
PTPN4-208ENST00000460289 LGR6Q9HBX8 967 aa30.78■■■□□ 2.52
PTPN4-208ENST00000460289 RNMTO43148 476 aaKnown RBP30.77■■■□□ 2.52
PTPN4-208ENST00000460289 POLD1P28340 1107 aa30.77■■■□□ 2.52
PTPN4-208ENST00000460289 ITPK1Q13572 414 aa30.77■■■□□ 2.52
PTPN4-208ENST00000460289 ARXQ96QS3 562 aa30.77■■■□□ 2.52
PTPN4-208ENST00000460289 SLC52A2Q9HAB3 445 aa30.77■■■□□ 2.52
PTPN4-208ENST00000460289 U2AF1L5P0DN76 240 aaPredicted RBP30.76■■■□□ 2.51
PTPN4-208ENST00000460289 U2AF1Q01081 240 aaKnown RBP eCLIP30.76■■■□□ 2.51
PTPN4-208ENST00000460289 C4BP0C0L5 1744 aa30.76■■■□□ 2.51
PTPN4-208ENST00000460289 TUBGCP6Q96RT7 1819 aa30.75■■■□□ 2.51
PTPN4-208ENST00000460289 RSPH6AQ9H0K4 717 aa30.74■■■□□ 2.51
PTPN4-208ENST00000460289 FCHSD2O94868 740 aa30.73■■■□□ 2.51
PTPN4-208ENST00000460289 PRKAR2BP31323 418 aa30.73■■■□□ 2.51
PTPN4-208ENST00000460289 SCN11AQ9UI33 1791 aa30.73■■■□□ 2.51
PTPN4-208ENST00000460289 SSFA2P28290 1259 aa30.72■■■□□ 2.51
PTPN4-208ENST00000460289 RALBP1Q15311 655 aa30.72■■■□□ 2.51
PTPN4-208ENST00000460289 SLC4A9Q96Q91 983 aa30.72■■■□□ 2.51
PTPN4-208ENST00000460289 GNAT3A8MTJ3 354 aa30.71■■■□□ 2.51
PTPN4-208ENST00000460289 PTCD1O75127 700 aaKnown RBP30.71■■■□□ 2.51
PTPN4-208ENST00000460289 FHDC1Q9C0D6 1143 aaPredicted RBP30.71■■■□□ 2.51
PTPN4-208ENST00000460289 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.7■■■□□ 2.51
PTPN4-208ENST00000460289 DCAF8L1A6NGE4 600 aa30.7■■■□□ 2.51
PTPN4-208ENST00000460289 PHF14O94880 888 aa30.69■■■□□ 2.5
PTPN4-208ENST00000460289 PHACTR3Q96KR7 559 aa30.69■■■□□ 2.5
PTPN4-208ENST00000460289 MAP3K5Q99683 1374 aa30.68■■■□□ 2.5
PTPN4-208ENST00000460289 GNPATO15228 680 aa30.68■■■□□ 2.5
PTPN4-208ENST00000460289 RC3H1Q5TC82 1133 aaKnown RBP30.68■■■□□ 2.5
PTPN4-208ENST00000460289 SYT17Q9BSW7 474 aa30.68■■■□□ 2.5
PTPN4-208ENST00000460289 ZNF831Q5JPB2 1677 aa30.68■■■□□ 2.5
PTPN4-208ENST00000460289 AMIGO3Q86WK7 504 aa30.66■■■□□ 2.5
PTPN4-208ENST00000460289 MRC1P22897 1456 aa30.65■■■□□ 2.5
PTPN4-208ENST00000460289 RTCBQ9Y3I0 505 aaKnown RBP30.65■■■□□ 2.5
PTPN4-208ENST00000460289 TEFQ10587 303 aa30.64■■■□□ 2.5
PTPN4-208ENST00000460289 IL17REQ8NFR9 667 aa30.64■■■□□ 2.5
PTPN4-208ENST00000460289 CNTNAP4Q9C0A0 1308 aa30.64■■■□□ 2.5
PTPN4-208ENST00000460289 COL24A1Q17RW2 1714 aa30.64■■■□□ 2.5
PTPN4-208ENST00000460289 ADAMTS7Q9UKP4 1686 aa30.63■■■□□ 2.49
PTPN4-208ENST00000460289 UBR3Q6ZT12 1888 aa30.63■■■□□ 2.49
PTPN4-208ENST00000460289 SLC39A6Q13433 755 aa30.62■■■□□ 2.49
PTPN4-208ENST00000460289 TRAPPC3LQ5T215 181 aa30.62■■■□□ 2.49
PTPN4-208ENST00000460289 MSL1Q68DK7 614 aa30.62■■■□□ 2.49
PTPN4-208ENST00000460289 SMIM5Q71RC9 77 aa30.62■■■□□ 2.49
PTPN4-208ENST00000460289 NEFMP07197 916 aa30.61■■■□□ 2.49
PTPN4-208ENST00000460289 RPS6KA4O75676 772 aa30.6■■■□□ 2.49
PTPN4-208ENST00000460289 ADRA2BP18089 450 aa30.6■■■□□ 2.49
PTPN4-208ENST00000460289 TTC5Q8N0Z6 440 aa30.58■■■□□ 2.49
PTPN4-208ENST00000460289 KLHL34Q8N239 644 aa30.58■■■□□ 2.49
PTPN4-208ENST00000460289 RTF1Q92541 710 aaKnown RBP30.58■■■□□ 2.49
PTPN4-208ENST00000460289 PNNQ9H307 717 aaKnown RBP30.58■■■□□ 2.49
PTPN4-208ENST00000460289 VIRMAQ69YN4 1812 aaKnown RBP30.57■■■□□ 2.48
PTPN4-208ENST00000460289 CRKLP46109 303 aaKnown RBP30.57■■■□□ 2.48
PTPN4-208ENST00000460289 VSIG10Q8N0Z9 540 aa30.57■■■□□ 2.48
PTPN4-208ENST00000460289 COL5A3P25940 1745 aaPredicted RBP30.56■■■□□ 2.48
PTPN4-208ENST00000460289 CEMIPQ8WUJ3 1361 aa30.55■■■□□ 2.48
PTPN4-208ENST00000460289 MYBBP1AQ9BQG0 1328 aaKnown RBP30.55■■■□□ 2.48
PTPN4-208ENST00000460289 HTATSF1O43719 755 aaKnown RBP30.55■■■□□ 2.48
PTPN4-208ENST00000460289 ARHGEF1Q92888 912 aaKnown RBP30.55■■■□□ 2.48
PTPN4-208ENST00000460289 RFC4P35249 363 aa30.54■■■□□ 2.48
PTPN4-208ENST00000460289 DNAJC10Q8IXB1 793 aa30.54■■■□□ 2.48
PTPN4-208ENST00000460289 ZNF790Q6PG37 636 aa30.53■■■□□ 2.48
PTPN4-208ENST00000460289 CICQ96RK0 1608 aaPredicted RBP30.51■■■□□ 2.48
PTPN4-208ENST00000460289 NLGN1Q8N2Q7 840 aa30.51■■■□□ 2.47
PTPN4-208ENST00000460289 INTS5Q6P9B9 1019 aaKnown RBP30.5■■■□□ 2.47
PTPN4-208ENST00000460289 CCDC87Q9NVE4 849 aa30.5■■■□□ 2.47
PTPN4-208ENST00000460289 KCPQ6ZWJ8 1503 aa30.5■■■□□ 2.47
PTPN4-208ENST00000460289 BTBD11A6QL63 1104 aa30.49■■■□□ 2.47
PTPN4-208ENST00000460289 CYP19A1P11511 503 aaPredicted RBP30.49■■■□□ 2.47
PTPN4-208ENST00000460289 MCM10Q7L590 875 aa30.49■■■□□ 2.47
PTPN4-208ENST00000460289 PLEKHF1Q96S99 279 aa30.49■■■□□ 2.47
PTPN4-208ENST00000460289 CD2APQ9Y5K6 639 aa30.49■■■□□ 2.47
PTPN4-208ENST00000460289 TJP1Q07157 1748 aa30.49■■■□□ 2.47
PTPN4-208ENST00000460289 TEX13AQ9BXU3 409 aaPredicted RBP30.48■■■□□ 2.47
PTPN4-208ENST00000460289 MYH14Q7Z406 1995 aaKnown RBP30.48■■■□□ 2.47
PTPN4-208ENST00000460289 ZNF496Q96IT1 587 aaPredicted RBP30.47■■■□□ 2.47
PTPN4-208ENST00000460289 MAPK8IP3Q9UPT6 1336 aa30.47■■■□□ 2.47
PTPN4-208ENST00000460289 STARD3NLO95772 234 aa30.46■■■□□ 2.47
PTPN4-208ENST00000460289 FMNL2Q96PY5 1086 aa30.46■■■□□ 2.47
PTPN4-208ENST00000460289 PRKRIP1Q9H875 184 aaPredicted RBP30.45■■■□□ 2.47
PTPN4-208ENST00000460289 GYS1P13807 737 aa30.44■■■□□ 2.46
PTPN4-208ENST00000460289 HEG1Q9ULI3 1381 aa30.43■■■□□ 2.46
PTPN4-208ENST00000460289 MMP10P09238 476 aa30.43■■■□□ 2.46
PTPN4-208ENST00000460289 DCTN1Q14203 1278 aa30.43■■■□□ 2.46
PTPN4-208ENST00000460289 NFE2L2Q16236 605 aa30.43■■■□□ 2.46
PTPN4-208ENST00000460289 NLGN2Q8NFZ4 835 aa30.43■■■□□ 2.46
PTPN4-208ENST00000460289 SIPA1L3O60292 1781 aaPredicted RBP30.43■■■□□ 2.46
PTPN4-208ENST00000460289 UBR2Q8IWV8 1755 aa30.43■■■□□ 2.46
PTPN4-208ENST00000460289 GPR162Q16538 588 aa30.41■■■□□ 2.46
PTPN4-208ENST00000460289 SOS1Q07889 1333 aaPredicted RBP30.41■■■□□ 2.46
PTPN4-208ENST00000460289 TAF7Q15545 349 aaPredicted RBP30.4■■■□□ 2.46
PTPN4-208ENST00000460289 ZBTB1Q9Y2K1 713 aa30.4■■■□□ 2.46
PTPN4-208ENST00000460289 USP42Q9H9J4 1324 aaKnown RBP30.4■■■□□ 2.46
PTPN4-208ENST00000460289 KCNQ3O43525 872 aa30.39■■■□□ 2.46
PTPN4-208ENST00000460289 ZPR1O75312 459 aa30.39■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms