RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 MED1Q15648 1581 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 FHOD3Q2V2M9 1422 aa6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 PPP1R3GB7ZBB8 358 aa6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 RECKO95980 971 aa6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 DPYDQ12882 1025 aa6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 NME8Q8N427 588 aa6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 CLP1Q92989 425 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 CARD10Q9BWT7 1032 aa6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 DENND4BO75064 1496 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 IQSEC2Q5JU85 1478 aa6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 CENPJQ9HC77 1338 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 ZBBXA8MT70 800 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 CCDC96Q2M329 555 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 TSNAXIP1Q2TAA8 658 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 TSGA10IPQ3SY00 556 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 C9orf131Q5VYM1 1079 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 LARP1Q6PKG0 1096 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 CEP120Q8N960 986 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 SREK1Q8WXA9 508 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 BCL2L12Q9HB09 334 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 SUPT16HQ9Y5B9 1047 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 SETD1BQ9UPS6 1966 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 LTBP4Q8N2S1 1624 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 C3P01024 1663 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 H3BRB1 525 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 C7P10643 843 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 PTPREP23469 700 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 CLDN10P78369 228 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 MTMR3Q13615 1198 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 MLECQ14165 292 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 ANKMY2Q8IV38 441 aa6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 TUT1Q9H6E5 874 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 SEPT9Q9UHD8 586 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-209ENST00000456975 HECW1Q76N89 1606 aa6.16□□□□□ -1.42
CCDC88A-209ENST00000456975 UHRF1BP1Q6BDS2 1440 aa6.16□□□□□ -1.42
CCDC88A-209ENST00000456975 ARHGEF12Q9NZN5 1544 aa6.16□□□□□ -1.42
CCDC88A-209ENST00000456975 PUS10Q3MIT2 529 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-209ENST00000456975 PLEKHM2Q8IWE5 1019 aa6.16□□□□□ -1.42
CCDC88A-209ENST00000456975 TRIM44Q96DX7 344 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-209ENST00000456975 PRIMPOLQ96LW4 560 aa6.16□□□□□ -1.42
CCDC88A-209ENST00000456975 MYH16Q9H6N6 1097 aa6.16□□□□□ -1.42
CCDC88A-209ENST00000456975 TERF2IPQ9NYB0 399 aa6.16□□□□□ -1.42
CCDC88A-209ENST00000456975 ATP10BO94823 1461 aa6.16□□□□□ -1.42
CCDC88A-209ENST00000456975 CASC1Q6TDU7 716 aa6.15□□□□□ -1.42
CCDC88A-209ENST00000456975 APBB1IPQ7Z5R6 666 aaPredicted RBP6.15□□□□□ -1.42
CCDC88A-209ENST00000456975 OGFOD1Q8N543 542 aa6.15□□□□□ -1.42
CCDC88A-209ENST00000456975 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.15□□□□□ -1.42
CCDC88A-209ENST00000456975 KIAA1468Q9P260 1216 aa6.15□□□□□ -1.42
CCDC88A-209ENST00000456975 MYBPC2Q14324 1141 aa6.15□□□□□ -1.43
CCDC88A-209ENST00000456975 NAALADL2Q58DX5 795 aa6.15□□□□□ -1.43
CCDC88A-209ENST00000456975 FBXO33Q7Z6M2 555 aa6.15□□□□□ -1.43
CCDC88A-209ENST00000456975 NFATC2IPQ8NCF5 419 aa6.15□□□□□ -1.43
CCDC88A-209ENST00000456975 MAP10Q9P2G4 905 aa6.15□□□□□ -1.43
CCDC88A-209ENST00000456975 METRNQ9UJH8 293 aa6.15□□□□□ -1.43
CCDC88A-209ENST00000456975 MAPK1P28482 360 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 PPP4R3BQ5MIZ7 849 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 CC2D1BQ5T0F9 858 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 GPR153Q6NV75 609 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 CAPN12Q6ZSI9 719 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 GAS2L2Q8NHY3 880 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 PTPRTO14522 1441 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 CLIP1P30622 1438 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 MARCH6O60337 910 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 RNF40O75150 1001 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 CFHP08603 1231 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 ZC3H6P61129 1189 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 FMN1Q68DA7 1419 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 CDCA7Q9BWT1 371 aaPredicted RBP6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 FKBPLQ9UIM3 349 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 KIAA1024Q9UPX6 916 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 PPME1Q9Y570 386 aa6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 NUP153P49790 1475 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-209ENST00000456975 TPD52L2O43399 206 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 SLFNL1Q499Z3 407 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 PLPP7Q8NBV4 271 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 MKNK1Q9BUB5 465 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 CEP126Q9P2H0 1117 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 MYO5CQ9NQX4 1742 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 CEP162Q5TB80 1403 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 VGLL3A8MV65 326 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 HOXB3P14651 431 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 RNF135Q8IUD6 432 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 ANKRD13AQ8IZ07 590 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 SLC39A7Q92504 469 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 C8orf37Q96NL8 207 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 KCNK17Q96T54 332 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 BACH2Q9BYV9 841 aa6.13□□□□□ -1.43
CCDC88A-209ENST00000456975 MAGI2Q86UL8 1455 aa6.12□□□□□ -1.43
CCDC88A-209ENST00000456975 C9orf84Q5VXU9 1444 aa6.12□□□□□ -1.43
CCDC88A-209ENST00000456975 ATP5J2-PTCD1G3V325 749 aa6.12□□□□□ -1.43
CCDC88A-209ENST00000456975 ATP6V1AP38606 617 aa6.12□□□□□ -1.43
CCDC88A-209ENST00000456975 RETREG3Q86VR2 466 aa6.12□□□□□ -1.43
CCDC88A-209ENST00000456975 OTUD6BQ8N6M0 293 aa6.12□□□□□ -1.43
CCDC88A-209ENST00000456975 SPATA32Q96LK8 384 aa6.12□□□□□ -1.43
CCDC88A-209ENST00000456975 DCBLD2Q96PD2 775 aa6.12□□□□□ -1.43
CCDC88A-209ENST00000456975 SEPT3Q9UH03 358 aa6.12□□□□□ -1.43
CCDC88A-209ENST00000456975 SLC27A5Q9Y2P5 690 aa6.12□□□□□ -1.43
CCDC88A-209ENST00000456975 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.12□□□□□ -1.43
CCDC88A-209ENST00000456975 CEBPAP49715 358 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 ECM1Q16610 540 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms